#include <objects/seq/Seqdesc.hpp>

Inheritance diagram for CSeqdesc:

Collaboration diagram for CSeqdesc:

Public Types
enum	ELabelType { eType , eContent , eBoth }

Public Types inherited from CSeqdesc_Base
enum	E_Choice { e_not_set = 0 , e_Mol_type , e_Modif , e_Method , e_Name , e_Title , e_Org , e_Comment , e_Num , e_Maploc , e_Pir , e_Genbank , e_Pub , e_Region , e_User , e_Sp , e_Dbxref , e_Embl , e_Create_date , e_Update_date , e_Prf , e_Pdb , e_Het , e_Source , e_Molinfo , e_Modelev }
	Choice variants. More...

enum	E_ChoiceStopper { e_MaxChoice = 26 }
	Maximum+1 value of the choice variant enumerator. More...

typedef EGIBB_mol	TMol_type

typedef list< EGIBB_mod >	TModif

typedef EGIBB_method	TMethod

typedef string	TName

typedef string	TTitle

typedef COrg_ref	TOrg

typedef string	TComment

typedef CNumbering	TNum

typedef CDbtag	TMaploc

typedef CPIR_block	TPir

typedef CGB_block	TGenbank

typedef CPubdesc	TPub

typedef string	TRegion

typedef CUser_object	TUser

typedef CSP_block	TSp

typedef CDbtag	TDbxref

typedef CEMBL_block	TEmbl

typedef CDate	TCreate_date

typedef CDate	TUpdate_date

typedef CPRF_block	TPrf

typedef CPDB_block	TPdb

typedef CHeterogen	THet

typedef CBioSource	TSource

typedef CMolInfo	TMolinfo

typedef CModelEvidenceSupport	TModelev

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CSeqdesc (void)

	~CSeqdesc (void)

void	GetLabel (string *const label, ELabelType label_type) const

Public Member Functions inherited from CSeqdesc_Base
	CSeqdesc_Base (void)

virtual	~CSeqdesc_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

virtual void	Reset (void)
	Reset the whole object. More...

virtual void	ResetSelection (void)
	Reset the selection (set it to e_not_set). More...

E_Choice	Which (void) const
	Which variant is currently selected. More...

void	CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...

void	ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...

void	Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...

void	Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...

bool	IsMol_type (void) const
	Check if variant Mol_type is selected. More...

TMol_type	GetMol_type (void) const
	Get the variant data. More...

TMol_type &	SetMol_type (void)
	Select the variant. More...

void	SetMol_type (TMol_type value)
	Select the variant and set its data. More...

bool	IsModif (void) const
	Check if variant Modif is selected. More...

const TModif &	GetModif (void) const
	Get the variant data. More...

TModif &	SetModif (void)
	Select the variant. More...

bool	IsMethod (void) const
	Check if variant Method is selected. More...

TMethod	GetMethod (void) const
	Get the variant data. More...

TMethod &	SetMethod (void)
	Select the variant. More...

void	SetMethod (TMethod value)
	Select the variant and set its data. More...

bool	IsName (void) const
	Check if variant Name is selected. More...

const TName &	GetName (void) const
	Get the variant data. More...

TName &	SetName (void)
	Select the variant. More...

void	SetName (const TName &value)
	Select the variant and set its data. More...

bool	IsTitle (void) const
	Check if variant Title is selected. More...

const TTitle &	GetTitle (void) const
	Get the variant data. More...

TTitle &	SetTitle (void)
	Select the variant. More...

void	SetTitle (const TTitle &value)
	Select the variant and set its data. More...

bool	IsOrg (void) const
	Check if variant Org is selected. More...

const TOrg &	GetOrg (void) const
	Get the variant data. More...

TOrg &	SetOrg (void)
	Select the variant. More...

void	SetOrg (TOrg &value)
	Select the variant and set its data. More...

bool	IsComment (void) const
	Check if variant Comment is selected. More...

const TComment &	GetComment (void) const
	Get the variant data. More...

TComment &	SetComment (void)
	Select the variant. More...

void	SetComment (const TComment &value)
	Select the variant and set its data. More...

bool	IsNum (void) const
	Check if variant Num is selected. More...

const TNum &	GetNum (void) const
	Get the variant data. More...

TNum &	SetNum (void)
	Select the variant. More...

void	SetNum (TNum &value)
	Select the variant and set its data. More...

bool	IsMaploc (void) const
	Check if variant Maploc is selected. More...

const TMaploc &	GetMaploc (void) const
	Get the variant data. More...

TMaploc &	SetMaploc (void)
	Select the variant. More...

void	SetMaploc (TMaploc &value)
	Select the variant and set its data. More...

bool	IsPir (void) const
	Check if variant Pir is selected. More...

const TPir &	GetPir (void) const
	Get the variant data. More...

TPir &	SetPir (void)
	Select the variant. More...

void	SetPir (TPir &value)
	Select the variant and set its data. More...

bool	IsGenbank (void) const
	Check if variant Genbank is selected. More...

const TGenbank &	GetGenbank (void) const
	Get the variant data. More...

TGenbank &	SetGenbank (void)
	Select the variant. More...

void	SetGenbank (TGenbank &value)
	Select the variant and set its data. More...

bool	IsPub (void) const
	Check if variant Pub is selected. More...

const TPub &	GetPub (void) const
	Get the variant data. More...

TPub &	SetPub (void)
	Select the variant. More...

void	SetPub (TPub &value)
	Select the variant and set its data. More...

bool	IsRegion (void) const
	Check if variant Region is selected. More...

const TRegion &	GetRegion (void) const
	Get the variant data. More...

TRegion &	SetRegion (void)
	Select the variant. More...

void	SetRegion (const TRegion &value)
	Select the variant and set its data. More...

bool	IsUser (void) const
	Check if variant User is selected. More...

const TUser &	GetUser (void) const
	Get the variant data. More...

TUser &	SetUser (void)
	Select the variant. More...

void	SetUser (TUser &value)
	Select the variant and set its data. More...

bool	IsSp (void) const
	Check if variant Sp is selected. More...

const TSp &	GetSp (void) const
	Get the variant data. More...

TSp &	SetSp (void)
	Select the variant. More...

void	SetSp (TSp &value)
	Select the variant and set its data. More...

bool	IsDbxref (void) const
	Check if variant Dbxref is selected. More...

const TDbxref &	GetDbxref (void) const
	Get the variant data. More...

TDbxref &	SetDbxref (void)
	Select the variant. More...

void	SetDbxref (TDbxref &value)
	Select the variant and set its data. More...

bool	IsEmbl (void) const
	Check if variant Embl is selected. More...

const TEmbl &	GetEmbl (void) const
	Get the variant data. More...

TEmbl &	SetEmbl (void)
	Select the variant. More...

void	SetEmbl (TEmbl &value)
	Select the variant and set its data. More...

bool	IsCreate_date (void) const
	Check if variant Create_date is selected. More...

const TCreate_date &	GetCreate_date (void) const
	Get the variant data. More...

TCreate_date &	SetCreate_date (void)
	Select the variant. More...

void	SetCreate_date (TCreate_date &value)
	Select the variant and set its data. More...

bool	IsUpdate_date (void) const
	Check if variant Update_date is selected. More...

const TUpdate_date &	GetUpdate_date (void) const
	Get the variant data. More...

TUpdate_date &	SetUpdate_date (void)
	Select the variant. More...

void	SetUpdate_date (TUpdate_date &value)
	Select the variant and set its data. More...

bool	IsPrf (void) const
	Check if variant Prf is selected. More...

const TPrf &	GetPrf (void) const
	Get the variant data. More...

TPrf &	SetPrf (void)
	Select the variant. More...

void	SetPrf (TPrf &value)
	Select the variant and set its data. More...

bool	IsPdb (void) const
	Check if variant Pdb is selected. More...

const TPdb &	GetPdb (void) const
	Get the variant data. More...

TPdb &	SetPdb (void)
	Select the variant. More...

void	SetPdb (TPdb &value)
	Select the variant and set its data. More...

bool	IsHet (void) const
	Check if variant Het is selected. More...

const THet &	GetHet (void) const
	Get the variant data. More...

THet &	SetHet (void)
	Select the variant. More...

void	SetHet (const THet &value)
	Select the variant and set its data. More...

bool	IsSource (void) const
	Check if variant Source is selected. More...

const TSource &	GetSource (void) const
	Get the variant data. More...

TSource &	SetSource (void)
	Select the variant. More...

void	SetSource (TSource &value)
	Select the variant and set its data. More...

bool	IsMolinfo (void) const
	Check if variant Molinfo is selected. More...

const TMolinfo &	GetMolinfo (void) const
	Get the variant data. More...

TMolinfo &	SetMolinfo (void)
	Select the variant. More...

void	SetMolinfo (TMolinfo &value)
	Select the variant and set its data. More...

bool	IsModelev (void) const
	Check if variant Modelev is selected. More...

const TModelev &	GetModelev (void) const
	Get the variant data. More...

TModelev &	SetModelev (void)
	Select the variant. More...

void	SetModelev (TModelev &value)
	Select the variant and set its data. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Private Types
typedef CSeqdesc_Base	Tparent

Private Member Functions
	CSeqdesc (const CSeqdesc &value)

CSeqdesc &	operator= (const CSeqdesc &value)

Additional Inherited Members
Static Public Member Functions inherited from CSeqdesc_Base
static string	SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 50 of file Seqdesc.hpp.

Member Typedef Documentation

◆ Tparent

typedef CSeqdesc_Base CSeqdesc::Tparent

private

Definition at line 52 of file Seqdesc.hpp.

Member Enumeration Documentation

◆ ELabelType

enum CSeqdesc::ELabelType

Enumerator
eType
eContent
eBoth

Definition at line 59 of file Seqdesc.hpp.

Constructor & Destructor Documentation

◆ CSeqdesc() [1/2]

CSeqdesc::CSeqdesc ( void )

inline

Definition at line 82 of file Seqdesc.hpp.

◆ ~CSeqdesc()

CSeqdesc::~CSeqdesc ( void )

Definition at line 59 of file Seqdesc.cpp.

◆ CSeqdesc() [2/2]

CSeqdesc::CSeqdesc ( const CSeqdesc & value )

private

Member Function Documentation

◆ GetLabel()

void CSeqdesc::GetLabel	(	string *const	label,
		ELabelType	label_type
	)		const

Definition at line 134 of file Seqdesc.cpp.

References eBoth, eContent, eType, label, s_GetContentLabel(), CSeqdesc_Base::SelectionName(), and CSeqdesc_Base::Which().

Referenced by CCitationsPanel::CreateControls(), CEditObjectSeq_desc::CreateWindow(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::LocationChange(), and CDescTypeSubpanel::SetClusters().

◆ operator=()

CSeqdesc& CSeqdesc::operator= ( const CSeqdesc & value )

private

The documentation for this class was generated from the following files:

include/objects/seq/Seqdesc.hpp
src/objects/seq/Seqdesc.cpp

Public Types

Public Member Functions

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Tparent

Member Enumeration Documentation

◆ ELabelType

Constructor & Destructor Documentation

◆ CSeqdesc() [1/2]

◆ ~CSeqdesc()

◆ CSeqdesc() [2/2]

Member Function Documentation

◆ GetLabel()

◆ operator=()