Search Toolkit Book for CSP_block
#include <objects/seqblock/SP_block.hpp>
Inheritance diagram for CSP_block:
Collaboration diagram for CSP_block:
Public Member Functions | |
| CSP_block (void) | |
| ~CSP_block (void) | |
| Public Member Functions inherited from CSP_block_Base | |
| CSP_block_Base (void) | |
| virtual | ~CSP_block_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetClass (void) const |
| Check if a value has been assigned to Class data member. More... | |
| bool | CanGetClass (void) const |
| Check if it is safe to call GetClass method. More... | |
| void | ResetClass (void) |
| Reset Class data member. More... | |
| TClass | GetClass (void) const |
| Get the Class member data. More... | |
| void | SetClass (TClass value) |
| Assign a value to Class data member. More... | |
| TClass & | SetClass (void) |
| Assign a value to Class data member. More... | |
| bool | IsSetExtra_acc (void) const |
| old SWISSPROT ids Check if a value has been assigned to Extra_acc data member. More... | |
| bool | CanGetExtra_acc (void) const |
| Check if it is safe to call GetExtra_acc method. More... | |
| void | ResetExtra_acc (void) |
| Reset Extra_acc data member. More... | |
| const TExtra_acc & | GetExtra_acc (void) const |
| Get the Extra_acc member data. More... | |
| TExtra_acc & | SetExtra_acc (void) |
| Assign a value to Extra_acc data member. More... | |
| bool | IsSetImeth (void) const |
| seq known to start with Met Check if a value has been assigned to Imeth data member. More... | |
| bool | CanGetImeth (void) const |
| Check if it is safe to call GetImeth method. More... | |
| void | ResetImeth (void) |
| Reset Imeth data member. More... | |
| void | SetDefaultImeth (void) |
| Assign default value to Imeth data member. More... | |
| TImeth | GetImeth (void) const |
| Get the Imeth member data. More... | |
| void | SetImeth (TImeth value) |
| Assign a value to Imeth data member. More... | |
| TImeth & | SetImeth (void) |
| Assign a value to Imeth data member. More... | |
| bool | IsSetPlasnm (void) const |
| plasmid names carrying gene Check if a value has been assigned to Plasnm data member. More... | |
| bool | CanGetPlasnm (void) const |
| Check if it is safe to call GetPlasnm method. More... | |
| void | ResetPlasnm (void) |
| Reset Plasnm data member. More... | |
| const TPlasnm & | GetPlasnm (void) const |
| Get the Plasnm member data. More... | |
| TPlasnm & | SetPlasnm (void) |
| Assign a value to Plasnm data member. More... | |
| bool | IsSetSeqref (void) const |
| xref to other sequences Check if a value has been assigned to Seqref data member. More... | |
| bool | CanGetSeqref (void) const |
| Check if it is safe to call GetSeqref method. More... | |
| void | ResetSeqref (void) |
| Reset Seqref data member. More... | |
| const TSeqref & | GetSeqref (void) const |
| Get the Seqref member data. More... | |
| TSeqref & | SetSeqref (void) |
| Assign a value to Seqref data member. More... | |
| bool | IsSetDbref (void) const |
| xref to non-sequence dbases Check if a value has been assigned to Dbref data member. More... | |
| bool | CanGetDbref (void) const |
| Check if it is safe to call GetDbref method. More... | |
| void | ResetDbref (void) |
| Reset Dbref data member. More... | |
| const TDbref & | GetDbref (void) const |
| Get the Dbref member data. More... | |
| TDbref & | SetDbref (void) |
| Assign a value to Dbref data member. More... | |
| bool | IsSetKeywords (void) const |
| keywords Check if a value has been assigned to Keywords data member. More... | |
| bool | CanGetKeywords (void) const |
| Check if it is safe to call GetKeywords method. More... | |
| void | ResetKeywords (void) |
| Reset Keywords data member. More... | |
| const TKeywords & | GetKeywords (void) const |
| Get the Keywords member data. More... | |
| TKeywords & | SetKeywords (void) |
| Assign a value to Keywords data member. More... | |
| bool | IsSetCreated (void) const |
| creation date Check if a value has been assigned to Created data member. More... | |
| bool | CanGetCreated (void) const |
| Check if it is safe to call GetCreated method. More... | |
| void | ResetCreated (void) |
| Reset Created data member. More... | |
| const TCreated & | GetCreated (void) const |
| Get the Created member data. More... | |
| void | SetCreated (TCreated &value) |
| Assign a value to Created data member. More... | |
| TCreated & | SetCreated (void) |
| Assign a value to Created data member. More... | |
| bool | IsSetSequpd (void) const |
| sequence update Check if a value has been assigned to Sequpd data member. More... | |
| bool | CanGetSequpd (void) const |
| Check if it is safe to call GetSequpd method. More... | |
| void | ResetSequpd (void) |
| Reset Sequpd data member. More... | |
| const TSequpd & | GetSequpd (void) const |
| Get the Sequpd member data. More... | |
| void | SetSequpd (TSequpd &value) |
| Assign a value to Sequpd data member. More... | |
| TSequpd & | SetSequpd (void) |
| Assign a value to Sequpd data member. More... | |
| bool | IsSetAnnotupd (void) const |
| annotation update Check if a value has been assigned to Annotupd data member. More... | |
| bool | CanGetAnnotupd (void) const |
| Check if it is safe to call GetAnnotupd method. More... | |
| void | ResetAnnotupd (void) |
| Reset Annotupd data member. More... | |
| const TAnnotupd & | GetAnnotupd (void) const |
| Get the Annotupd member data. More... | |
| void | SetAnnotupd (TAnnotupd &value) |
| Assign a value to Annotupd data member. More... | |
| TAnnotupd & | SetAnnotupd (void) |
| Assign a value to Annotupd data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CSP_block_Base | Tparent |
Private Member Functions | |
| CSP_block (const CSP_block &value) | |
| CSP_block & | operator= (const CSP_block &value) |
Additional Inherited Members | |
| Public Types inherited from CSP_block_Base | |
| enum | EClass { eClass_not_set = 0 , eClass_standard = 1 , eClass_prelim = 2 , eClass_other = 255 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_class , e_extra_acc , e_imeth , e_plasnm , e_seqref , e_dbref , e_keywords , e_created , e_sequpd , e_annotupd } |
| typedef EClass | TClass |
| typedef list< string > | TExtra_acc |
| typedef bool | TImeth |
| typedef list< string > | TPlasnm |
| typedef list< CRef< CSeq_id > > | TSeqref |
| typedef list< CRef< CDbtag > > | TDbref |
| typedef list< string > | TKeywords |
| typedef CDate | TCreated |
| typedef CDate | TSequpd |
| typedef CDate | TAnnotupd |
| typedef Tparent::CMemberIndex< E_memberIndex, 11 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSP_block_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EClass (void) |
| Access to EClass's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CSP_block –.
Definition at line 65 of file SP_block.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqblock/SP_block.hpp
- src/objects/seqblock/SP_block.cpp
