Search Toolkit Book for CEMBL_block
#include <objects/seqblock/EMBL_block.hpp>
Inheritance diagram for CEMBL_block:
Collaboration diagram for CEMBL_block:
Public Member Functions | |
| CEMBL_block (void) | |
| ~CEMBL_block (void) | |
| Public Member Functions inherited from CEMBL_block_Base | |
| CEMBL_block_Base (void) | |
| virtual | ~CEMBL_block_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetClass (void) const |
| Check if a value has been assigned to Class data member. More... | |
| bool | CanGetClass (void) const |
| Check if it is safe to call GetClass method. More... | |
| void | ResetClass (void) |
| Reset Class data member. More... | |
| void | SetDefaultClass (void) |
| Assign default value to Class data member. More... | |
| TClass | GetClass (void) const |
| Get the Class member data. More... | |
| void | SetClass (TClass value) |
| Assign a value to Class data member. More... | |
| TClass & | SetClass (void) |
| Assign a value to Class data member. More... | |
| bool | IsSetDiv (void) const |
| Check if a value has been assigned to Div data member. More... | |
| bool | CanGetDiv (void) const |
| Check if it is safe to call GetDiv method. More... | |
| void | ResetDiv (void) |
| Reset Div data member. More... | |
| TDiv | GetDiv (void) const |
| Get the Div member data. More... | |
| void | SetDiv (TDiv value) |
| Assign a value to Div data member. More... | |
| TDiv & | SetDiv (void) |
| Assign a value to Div data member. More... | |
| bool | IsSetCreation_date (void) const |
| Check if a value has been assigned to Creation_date data member. More... | |
| bool | CanGetCreation_date (void) const |
| Check if it is safe to call GetCreation_date method. More... | |
| void | ResetCreation_date (void) |
| Reset Creation_date data member. More... | |
| const TCreation_date & | GetCreation_date (void) const |
| Get the Creation_date member data. More... | |
| void | SetCreation_date (TCreation_date &value) |
| Assign a value to Creation_date data member. More... | |
| TCreation_date & | SetCreation_date (void) |
| Assign a value to Creation_date data member. More... | |
| bool | IsSetUpdate_date (void) const |
| Check if a value has been assigned to Update_date data member. More... | |
| bool | CanGetUpdate_date (void) const |
| Check if it is safe to call GetUpdate_date method. More... | |
| void | ResetUpdate_date (void) |
| Reset Update_date data member. More... | |
| const TUpdate_date & | GetUpdate_date (void) const |
| Get the Update_date member data. More... | |
| void | SetUpdate_date (TUpdate_date &value) |
| Assign a value to Update_date data member. More... | |
| TUpdate_date & | SetUpdate_date (void) |
| Assign a value to Update_date data member. More... | |
| bool | IsSetExtra_acc (void) const |
| Check if a value has been assigned to Extra_acc data member. More... | |
| bool | CanGetExtra_acc (void) const |
| Check if it is safe to call GetExtra_acc method. More... | |
| void | ResetExtra_acc (void) |
| Reset Extra_acc data member. More... | |
| const TExtra_acc & | GetExtra_acc (void) const |
| Get the Extra_acc member data. More... | |
| TExtra_acc & | SetExtra_acc (void) |
| Assign a value to Extra_acc data member. More... | |
| bool | IsSetKeywords (void) const |
| Check if a value has been assigned to Keywords data member. More... | |
| bool | CanGetKeywords (void) const |
| Check if it is safe to call GetKeywords method. More... | |
| void | ResetKeywords (void) |
| Reset Keywords data member. More... | |
| const TKeywords & | GetKeywords (void) const |
| Get the Keywords member data. More... | |
| TKeywords & | SetKeywords (void) |
| Assign a value to Keywords data member. More... | |
| bool | IsSetXref (void) const |
| Check if a value has been assigned to Xref data member. More... | |
| bool | CanGetXref (void) const |
| Check if it is safe to call GetXref method. More... | |
| void | ResetXref (void) |
| Reset Xref data member. More... | |
| const TXref & | GetXref (void) const |
| Get the Xref member data. More... | |
| TXref & | SetXref (void) |
| Assign a value to Xref data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CEMBL_block_Base | Tparent |
Private Member Functions | |
| CEMBL_block (const CEMBL_block &value) | |
| CEMBL_block & | operator= (const CEMBL_block &value) |
Additional Inherited Members | |
| Public Types inherited from CEMBL_block_Base | |
| enum | EClass { eClass_not_set = 0 , eClass_standard = 1 , eClass_unannotated = 2 , eClass_other = 255 } |
| enum | EDiv { eDiv_fun = 0 , eDiv_inv = 1 , eDiv_mam = 2 , eDiv_org = 3 , eDiv_phg = 4 , eDiv_pln = 5 , eDiv_pri = 6 , eDiv_pro = 7 , eDiv_rod = 8 , eDiv_syn = 9 , eDiv_una = 10 , eDiv_vrl = 11 , eDiv_vrt = 12 , eDiv_pat = 13 , eDiv_est = 14 , eDiv_sts = 15 , eDiv_other = 255 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_class , e_div , e_creation_date , e_update_date , e_extra_acc , e_keywords , e_xref } |
| typedef EClass | TClass |
| typedef EDiv | TDiv |
| typedef CDate | TCreation_date |
| typedef CDate | TUpdate_date |
| typedef list< string > | TExtra_acc |
| typedef list< string > | TKeywords |
| typedef list< CRef< CEMBL_xref > > | TXref |
| typedef Tparent::CMemberIndex< E_memberIndex, 8 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CEMBL_block_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EClass (void) |
| Access to EClass's attributes (values, names) as defined in spec. More... | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EDiv (void) |
| Access to EDiv's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CEMBL_block –.
Definition at line 65 of file EMBL_block.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqblock/EMBL_block.hpp
- src/objects/seqblock/EMBL_block.cpp
