CPIR_block Class Reference

Search Toolkit Book for CPIR_block

CPIR_block –. More...

#include <objects/seqblock/PIR_block.hpp>

Inheritance diagram for CPIR_block:

Collaboration diagram for CPIR_block:

Public Member Functions
	CPIR_block (void)
	~CPIR_block (void)
Public Member Functions inherited from CPIR_block_Base
	CPIR_block_Base (void)
virtual	~CPIR_block_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetHad_punct (void) const
	had punctuation in sequence ? Check if a value has been assigned to Had_punct data member. More...
bool	CanGetHad_punct (void) const
	Check if it is safe to call GetHad_punct method. More...
void	ResetHad_punct (void)
	Reset Had_punct data member. More...
THad_punct	GetHad_punct (void) const
	Get the Had_punct member data. More...
void	SetHad_punct (THad_punct value)
	Assign a value to Had_punct data member. More...
THad_punct &	SetHad_punct (void)
	Assign a value to Had_punct data member. More...
bool	IsSetHost (void) const
	Check if a value has been assigned to Host data member. More...
bool	CanGetHost (void) const
	Check if it is safe to call GetHost method. More...
void	ResetHost (void)
	Reset Host data member. More...
const THost &	GetHost (void) const
	Get the Host member data. More...
void	SetHost (const THost &value)
	Assign a value to Host data member. More...
void	SetHost (THost &&value)
THost &	SetHost (void)
	Assign a value to Host data member. More...
bool	IsSetSource (void) const
	source line Check if a value has been assigned to Source data member. More...
bool	CanGetSource (void) const
	Check if it is safe to call GetSource method. More...
void	ResetSource (void)
	Reset Source data member. More...
const TSource &	GetSource (void) const
	Get the Source member data. More...
void	SetSource (const TSource &value)
	Assign a value to Source data member. More...
void	SetSource (TSource &&value)
TSource &	SetSource (void)
	Assign a value to Source data member. More...
bool	IsSetSummary (void) const
	Check if a value has been assigned to Summary data member. More...
bool	CanGetSummary (void) const
	Check if it is safe to call GetSummary method. More...
void	ResetSummary (void)
	Reset Summary data member. More...
const TSummary &	GetSummary (void) const
	Get the Summary member data. More...
void	SetSummary (const TSummary &value)
	Assign a value to Summary data member. More...
void	SetSummary (TSummary &&value)
TSummary &	SetSummary (void)
	Assign a value to Summary data member. More...
bool	IsSetGenetic (void) const
	Check if a value has been assigned to Genetic data member. More...
bool	CanGetGenetic (void) const
	Check if it is safe to call GetGenetic method. More...
void	ResetGenetic (void)
	Reset Genetic data member. More...
const TGenetic &	GetGenetic (void) const
	Get the Genetic member data. More...
void	SetGenetic (const TGenetic &value)
	Assign a value to Genetic data member. More...
void	SetGenetic (TGenetic &&value)
TGenetic &	SetGenetic (void)
	Assign a value to Genetic data member. More...
bool	IsSetIncludes (void) const
	Check if a value has been assigned to Includes data member. More...
bool	CanGetIncludes (void) const
	Check if it is safe to call GetIncludes method. More...
void	ResetIncludes (void)
	Reset Includes data member. More...
const TIncludes &	GetIncludes (void) const
	Get the Includes member data. More...
void	SetIncludes (const TIncludes &value)
	Assign a value to Includes data member. More...
void	SetIncludes (TIncludes &&value)
TIncludes &	SetIncludes (void)
	Assign a value to Includes data member. More...
bool	IsSetPlacement (void) const
	Check if a value has been assigned to Placement data member. More...
bool	CanGetPlacement (void) const
	Check if it is safe to call GetPlacement method. More...
void	ResetPlacement (void)
	Reset Placement data member. More...
const TPlacement &	GetPlacement (void) const
	Get the Placement member data. More...
void	SetPlacement (const TPlacement &value)
	Assign a value to Placement data member. More...
void	SetPlacement (TPlacement &&value)
TPlacement &	SetPlacement (void)
	Assign a value to Placement data member. More...
bool	IsSetSuperfamily (void) const
	Check if a value has been assigned to Superfamily data member. More...
bool	CanGetSuperfamily (void) const
	Check if it is safe to call GetSuperfamily method. More...
void	ResetSuperfamily (void)
	Reset Superfamily data member. More...
const TSuperfamily &	GetSuperfamily (void) const
	Get the Superfamily member data. More...
void	SetSuperfamily (const TSuperfamily &value)
	Assign a value to Superfamily data member. More...
void	SetSuperfamily (TSuperfamily &&value)
TSuperfamily &	SetSuperfamily (void)
	Assign a value to Superfamily data member. More...
bool	IsSetKeywords (void) const
	Check if a value has been assigned to Keywords data member. More...
bool	CanGetKeywords (void) const
	Check if it is safe to call GetKeywords method. More...
void	ResetKeywords (void)
	Reset Keywords data member. More...
const TKeywords &	GetKeywords (void) const
	Get the Keywords member data. More...
TKeywords &	SetKeywords (void)
	Assign a value to Keywords data member. More...
bool	IsSetCross_reference (void) const
	Check if a value has been assigned to Cross_reference data member. More...
bool	CanGetCross_reference (void) const
	Check if it is safe to call GetCross_reference method. More...
void	ResetCross_reference (void)
	Reset Cross_reference data member. More...
const TCross_reference &	GetCross_reference (void) const
	Get the Cross_reference member data. More...
void	SetCross_reference (const TCross_reference &value)
	Assign a value to Cross_reference data member. More...
void	SetCross_reference (TCross_reference &&value)
TCross_reference &	SetCross_reference (void)
	Assign a value to Cross_reference data member. More...
bool	IsSetDate (void) const
	Check if a value has been assigned to Date data member. More...
bool	CanGetDate (void) const
	Check if it is safe to call GetDate method. More...
void	ResetDate (void)
	Reset Date data member. More...
const TDate &	GetDate (void) const
	Get the Date member data. More...
void	SetDate (const TDate &value)
	Assign a value to Date data member. More...
void	SetDate (TDate &&value)
TDate &	SetDate (void)
	Assign a value to Date data member. More...
bool	IsSetSeq_raw (void) const
	seq with punctuation Check if a value has been assigned to Seq_raw data member. More...
bool	CanGetSeq_raw (void) const
	Check if it is safe to call GetSeq_raw method. More...
void	ResetSeq_raw (void)
	Reset Seq_raw data member. More...
const TSeq_raw &	GetSeq_raw (void) const
	Get the Seq_raw member data. More...
void	SetSeq_raw (const TSeq_raw &value)
	Assign a value to Seq_raw data member. More...
void	SetSeq_raw (TSeq_raw &&value)
TSeq_raw &	SetSeq_raw (void)
	Assign a value to Seq_raw data member. More...
bool	IsSetSeqref (void) const
	xref to other sequences Check if a value has been assigned to Seqref data member. More...
bool	CanGetSeqref (void) const
	Check if it is safe to call GetSeqref method. More...
void	ResetSeqref (void)
	Reset Seqref data member. More...
const TSeqref &	GetSeqref (void) const
	Get the Seqref member data. More...
TSeqref &	SetSeqref (void)
	Assign a value to Seqref data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Private Types
typedef CPIR_block_Base	Tparent

Private Member Functions
	CPIR_block (const CPIR_block &value)
CPIR_block &	operator= (const CPIR_block &value)

Additional Inherited Members
Public Types inherited from CPIR_block_Base
enum class	E_memberIndex {   e__allMandatory = 0 , e_had_punct , e_host , e_source ,   e_summary , e_genetic , e_includes , e_placement ,   e_superfamily , e_keywords , e_cross_reference , e_date ,   e_seq_raw , e_seqref }
typedef bool	THad_punct
typedef string	THost
typedef string	TSource
typedef string	TSummary
typedef string	TGenetic
typedef string	TIncludes
typedef string	TPlacement
typedef string	TSuperfamily
typedef list< string >	TKeywords
typedef string	TCross_reference
typedef string	TDate
typedef string	TSeq_raw
typedef list< CRef< CSeq_id > >	TSeqref
typedef Tparent::CMemberIndex< E_memberIndex, 14 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CPIR_block –.

Definition at line 65 of file PIR_block.hpp.

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The documentation for this class was generated from the following files:

• include/objects/seqblock/PIR_block.hpp
• src/objects/seqblock/PIR_block.cpp