Search Toolkit Book for CPC_Compound
#include <objects/pcsubstance/PC_Compound.hpp>
Inheritance diagram for CPC_Compound:
Collaboration diagram for CPC_Compound:
Public Member Functions | |
| CPC_Compound (void) | |
| ~CPC_Compound (void) | |
| Public Member Functions inherited from CPC_Compound_Base | |
| CPC_Compound_Base (void) | |
| virtual | ~CPC_Compound_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetId (void) const |
| Tracking Information Compound Qualifier (Type/ID) Check if a value has been assigned to Id data member. More... | |
| bool | CanGetId (void) const |
| Check if it is safe to call GetId method. More... | |
| void | ResetId (void) |
| Reset Id data member. More... | |
| const TId & | GetId (void) const |
| Get the Id member data. More... | |
| void | SetId (TId &value) |
| Assign a value to Id data member. More... | |
| TId & | SetId (void) |
| Assign a value to Id data member. More... | |
| bool | IsSetAtoms (void) const |
| AtomID/Type Information Check if a value has been assigned to Atoms data member. More... | |
| bool | CanGetAtoms (void) const |
| Check if it is safe to call GetAtoms method. More... | |
| void | ResetAtoms (void) |
| Reset Atoms data member. More... | |
| const TAtoms & | GetAtoms (void) const |
| Get the Atoms member data. More... | |
| void | SetAtoms (TAtoms &value) |
| Assign a value to Atoms data member. More... | |
| TAtoms & | SetAtoms (void) |
| Assign a value to Atoms data member. More... | |
| bool | IsSetBonds (void) const |
| BondID/Type/Atom Information Check if a value has been assigned to Bonds data member. More... | |
| bool | CanGetBonds (void) const |
| Check if it is safe to call GetBonds method. More... | |
| void | ResetBonds (void) |
| Reset Bonds data member. More... | |
| const TBonds & | GetBonds (void) const |
| Get the Bonds member data. More... | |
| void | SetBonds (TBonds &value) |
| Assign a value to Bonds data member. More... | |
| TBonds & | SetBonds (void) |
| Assign a value to Bonds data member. More... | |
| bool | IsSetStereo (void) const |
| StereoCenter Descriptions Check if a value has been assigned to Stereo data member. More... | |
| bool | CanGetStereo (void) const |
| Check if it is safe to call GetStereo method. More... | |
| void | ResetStereo (void) |
| Reset Stereo data member. More... | |
| const TStereo & | GetStereo (void) const |
| Get the Stereo member data. More... | |
| TStereo & | SetStereo (void) |
| Assign a value to Stereo data member. More... | |
| bool | IsSetCoords (void) const |
| 2D/3D Coordinate Sets of Compound Check if a value has been assigned to Coords data member. More... | |
| bool | CanGetCoords (void) const |
| Check if it is safe to call GetCoords method. More... | |
| void | ResetCoords (void) |
| Reset Coords data member. More... | |
| const TCoords & | GetCoords (void) const |
| Get the Coords member data. More... | |
| TCoords & | SetCoords (void) |
| Assign a value to Coords data member. More... | |
| bool | IsSetCharge (void) const |
| Provided Total Formal Charge (Signed Integer) Check if a value has been assigned to Charge data member. More... | |
| bool | CanGetCharge (void) const |
| Check if it is safe to call GetCharge method. More... | |
| void | ResetCharge (void) |
| Reset Charge data member. More... | |
| TCharge | GetCharge (void) const |
| Get the Charge member data. More... | |
| void | SetCharge (TCharge value) |
| Assign a value to Charge data member. More... | |
| TCharge & | SetCharge (void) |
| Assign a value to Charge data member. More... | |
| bool | IsSetProps (void) const |
| Derived (computed) Properties Check if a value has been assigned to Props data member. More... | |
| bool | CanGetProps (void) const |
| Check if it is safe to call GetProps method. More... | |
| void | ResetProps (void) |
| Reset Props data member. More... | |
| const TProps & | GetProps (void) const |
| Get the Props member data. More... | |
| TProps & | SetProps (void) |
| Assign a value to Props data member. More... | |
| bool | IsSetStereogroups (void) const |
| Relative stereochemistry groups Check if a value has been assigned to Stereogroups data member. More... | |
| bool | CanGetStereogroups (void) const |
| Check if it is safe to call GetStereogroups method. More... | |
| void | ResetStereogroups (void) |
| Reset Stereogroups data member. More... | |
| const TStereogroups & | GetStereogroups (void) const |
| Get the Stereogroups member data. More... | |
| TStereogroups & | SetStereogroups (void) |
| Assign a value to Stereogroups data member. More... | |
| bool | IsSetCount (void) const |
| Counts of various properties Check if a value has been assigned to Count data member. More... | |
| bool | CanGetCount (void) const |
| Check if it is safe to call GetCount method. More... | |
| void | ResetCount (void) |
| Reset Count data member. More... | |
| const TCount & | GetCount (void) const |
| Get the Count member data. More... | |
| void | SetCount (TCount &value) |
| Assign a value to Count data member. More... | |
| TCount & | SetCount (void) |
| Assign a value to Count data member. More... | |
| bool | IsSetVbalt (void) const |
| Alternate Valence-Bond Forms Check if a value has been assigned to Vbalt data member. More... | |
| bool | CanGetVbalt (void) const |
| Check if it is safe to call GetVbalt method. More... | |
| void | ResetVbalt (void) |
| Reset Vbalt data member. More... | |
| const TVbalt & | GetVbalt (void) const |
| Get the Vbalt member data. More... | |
| void | SetVbalt (TVbalt &value) |
| Assign a value to Vbalt data member. More... | |
| TVbalt & | SetVbalt (void) |
| Assign a value to Vbalt data member. More... | |
| bool | IsSetGroups (void) const |
| Superatom groups Check if a value has been assigned to Groups data member. More... | |
| bool | CanGetGroups (void) const |
| Check if it is safe to call GetGroups method. More... | |
| void | ResetGroups (void) |
| Reset Groups data member. More... | |
| const TGroups & | GetGroups (void) const |
| Get the Groups member data. More... | |
| TGroups & | SetGroups (void) |
| Assign a value to Groups data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CPC_Compound_Base | Tparent |
Private Member Functions | |
| CPC_Compound (const CPC_Compound &value) | |
| CPC_Compound & | operator= (const CPC_Compound &value) |
Additional Inherited Members | |
| Public Types inherited from CPC_Compound_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_id , e_atoms , e_bonds , e_stereo , e_coords , e_charge , e_props , e_stereogroups , e_count , e_vbalt , e_groups } |
| typedef CPC_CompoundType | TId |
| typedef CPC_Atoms | TAtoms |
| typedef CPC_Bonds | TBonds |
| typedef list< CRef< CPC_StereoCenter > > | TStereo |
| typedef list< CRef< CPC_Coordinates > > | TCoords |
| typedef int | TCharge |
| typedef list< CRef< CPC_InfoData > > | TProps |
| typedef list< CRef< CPC_StereoGroup > > | TStereogroups |
| typedef CPC_Count | TCount |
| typedef CPC_Compounds | TVbalt |
| typedef list< CRef< CPC_Group > > | TGroups |
| typedef Tparent::CMemberIndex< E_memberIndex, 12 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CPC_Compound –.
Definition at line 65 of file PC_Compound.hpp.
The documentation for this class was generated from the following files:
- include/objects/pcsubstance/PC_Compound.hpp
- src/objects/pcsubstance/PC_Compound.cpp
