Search Toolkit Book for CPC_Group
#include <objects/pcsubstance/PC_Group.hpp>
Inheritance diagram for CPC_Group:
Collaboration diagram for CPC_Group:
Public Member Functions | |
| CPC_Group (void) | |
| ~CPC_Group (void) | |
| Public Member Functions inherited from CPC_Group_Base | |
| CPC_Group_Base (void) | |
| virtual | ~CPC_Group_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetAtoms (void) const |
| Atoms in this group (list of aid from PC-Atoms, e.g. More... | |
| bool | CanGetAtoms (void) const |
| Check if it is safe to call GetAtoms method. More... | |
| void | ResetAtoms (void) |
| Reset Atoms data member. More... | |
| const TAtoms & | GetAtoms (void) const |
| Get the Atoms member data. More... | |
| TAtoms & | SetAtoms (void) |
| Assign a value to Atoms data member. More... | |
| bool | IsSetType (void) const |
| Check if a value has been assigned to Type data member. More... | |
| bool | CanGetType (void) const |
| Check if it is safe to call GetType method. More... | |
| void | ResetType (void) |
| Reset Type data member. More... | |
| TType | GetType (void) const |
| Get the Type member data. More... | |
| void | SetType (TType value) |
| Assign a value to Type data member. More... | |
| TType & | SetType (void) |
| Assign a value to Type data member. More... | |
| bool | IsSetSubtype (void) const |
| Check if a value has been assigned to Subtype data member. More... | |
| bool | CanGetSubtype (void) const |
| Check if it is safe to call GetSubtype method. More... | |
| void | ResetSubtype (void) |
| Reset Subtype data member. More... | |
| TSubtype | GetSubtype (void) const |
| Get the Subtype member data. More... | |
| void | SetSubtype (TSubtype value) |
| Assign a value to Subtype data member. More... | |
| TSubtype & | SetSubtype (void) |
| Assign a value to Subtype data member. More... | |
| bool | IsSetConnectivity (void) const |
| Check if a value has been assigned to Connectivity data member. More... | |
| bool | CanGetConnectivity (void) const |
| Check if it is safe to call GetConnectivity method. More... | |
| void | ResetConnectivity (void) |
| Reset Connectivity data member. More... | |
| TConnectivity | GetConnectivity (void) const |
| Get the Connectivity member data. More... | |
| void | SetConnectivity (TConnectivity value) |
| Assign a value to Connectivity data member. More... | |
| TConnectivity & | SetConnectivity (void) |
| Assign a value to Connectivity data member. More... | |
| bool | IsSetLabel (void) const |
| Label (e.g. More... | |
| bool | CanGetLabel (void) const |
| Check if it is safe to call GetLabel method. More... | |
| void | ResetLabel (void) |
| Reset Label data member. More... | |
| TLabel | GetLabel (void) const |
| Get the Label member data. More... | |
| void | SetLabel (TLabel value) |
| Assign a value to Label data member. More... | |
| TLabel & | SetLabel (void) |
| Assign a value to Label data member. More... | |
| bool | IsSetSubscript (void) const |
| Subscript (e.g. More... | |
| bool | CanGetSubscript (void) const |
| Check if it is safe to call GetSubscript method. More... | |
| void | ResetSubscript (void) |
| Reset Subscript data member. More... | |
| const TSubscript & | GetSubscript (void) const |
| Get the Subscript member data. More... | |
| void | SetSubscript (const TSubscript &value) |
| Assign a value to Subscript data member. More... | |
| void | SetSubscript (TSubscript &&value) |
| TSubscript & | SetSubscript (void) |
| Assign a value to Subscript data member. More... | |
| bool | IsSetRepeat_count (void) const |
| Check if a value has been assigned to Repeat_count data member. More... | |
| bool | CanGetRepeat_count (void) const |
| Check if it is safe to call GetRepeat_count method. More... | |
| void | ResetRepeat_count (void) |
| Reset Repeat_count data member. More... | |
| const TRepeat_count & | GetRepeat_count (void) const |
| Get the Repeat_count member data. More... | |
| void | SetRepeat_count (TRepeat_count &value) |
| Assign a value to Repeat_count data member. More... | |
| TRepeat_count & | SetRepeat_count (void) |
| Assign a value to Repeat_count data member. More... | |
| bool | IsSetBonds (void) const |
| Check if a value has been assigned to Bonds data member. More... | |
| bool | CanGetBonds (void) const |
| Check if it is safe to call GetBonds method. More... | |
| void | ResetBonds (void) |
| Reset Bonds data member. More... | |
| const TBonds & | GetBonds (void) const |
| Get the Bonds member data. More... | |
| void | SetBonds (TBonds &value) |
| Assign a value to Bonds data member. More... | |
| TBonds & | SetBonds (void) |
| Assign a value to Bonds data member. More... | |
| bool | IsSetBrackets (void) const |
| Check if a value has been assigned to Brackets data member. More... | |
| bool | CanGetBrackets (void) const |
| Check if it is safe to call GetBrackets method. More... | |
| void | ResetBrackets (void) |
| Reset Brackets data member. More... | |
| const TBrackets & | GetBrackets (void) const |
| Get the Brackets member data. More... | |
| void | SetBrackets (TBrackets &value) |
| Assign a value to Brackets data member. More... | |
| TBrackets & | SetBrackets (void) |
| Assign a value to Brackets data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CPC_Group_Base | Tparent |
Private Member Functions | |
| CPC_Group (const CPC_Group &value) | |
| CPC_Group & | operator= (const CPC_Group &value) |
Additional Inherited Members | |
| Public Types inherited from CPC_Group_Base | |
| enum | EType { eType_sup = 1 , eType_mul = 2 , eType_sru = 3 , eType_mon = 4 , eType_mer = 5 , eType_cop = 6 , eType_cro = 7 , eType_mod = 8 , eType_gra = 9 , eType_com = 10 , eType_mix = 11 , eType_for = 12 , eType_dat = 13 , eType_any = 14 , eType_gen = 15 , eType_unknown = 255 } |
| These enumerated values are adapted from the ctfile format specification Type of group (e.g. More... | |
| enum | ESubtype { eSubtype_alt = 1 , eSubtype_ran = 2 , eSubtype_blo = 3 , eSubtype_unknown = 255 } |
| Subtype (e.g. from MOL field SST) More... | |
| enum | EConnectivity { eConnectivity_hh = 1 , eConnectivity_ht = 2 , eConnectivity_eu = 3 , eConnectivity_unknown = 255 } |
| Connectivity (e.g. from MOL field SCN) More... | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_atoms , e_type , e_subtype , e_connectivity , e_label , e_subscript , e_repeat_count , e_bonds , e_brackets } |
| typedef vector< int > | TAtoms |
| typedef int | TType |
| typedef int | TSubtype |
| typedef int | TConnectivity |
| typedef int | TLabel |
| typedef string | TSubscript |
| typedef C_Repeat_count | TRepeat_count |
| typedef C_Bonds | TBonds |
| typedef C_Brackets | TBrackets |
| typedef Tparent::CMemberIndex< E_memberIndex, 10 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CPC_Group_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EType (void) |
| Access to EType's attributes (values, names) as defined in spec. More... | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ESubtype (void) |
| Access to ESubtype's attributes (values, names) as defined in spec. More... | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EConnectivity (void) |
| Access to EConnectivity's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CPC_Group –.
Definition at line 65 of file PC_Group.hpp.
The documentation for this class was generated from the following files:
- include/objects/pcsubstance/PC_Group.hpp
- src/objects/pcsubstance/PC_Group.cpp
