Search Toolkit Book for CSeqTable_multi_data

#include <objects/seqtable/SeqTable_multi_data.hpp>

Inheritance diagram for CSeqTable_multi_data:

Collaboration diagram for CSeqTable_multi_data:

Classes
class	CReserveHook

Public Types
typedef vector< char >	TBytesValue

Public Types inherited from CSeqTable_multi_data_Base
enum	E_Choice { e_not_set = 0 , e_Int , e_Real , e_String , e_Bytes , e_Common_string , e_Common_bytes , e_Bit , e_Loc , e_Id , e_Interval , e_Int_delta , e_Int_scaled , e_Real_scaled , e_Bit_bvector , e_Int1 , e_Int2 , e_Int8 }
	Choice variants. More...

enum	E_ChoiceStopper { e_MaxChoice = 18 }
	Maximum+1 value of the choice variant enumerator. More...

typedef vector< int >	TInt

typedef vector< double >	TReal

typedef vector< CStringUTF8 >	TString

typedef vector< vector< char > * >	TBytes

typedef CCommonString_table	TCommon_string

typedef CCommonBytes_table	TCommon_bytes

typedef vector< char >	TBit

typedef vector< CRef< CSeq_loc > >	TLoc

typedef vector< CRef< CSeq_id > >	TId

typedef vector< CRef< CSeq_interval > >	TInterval

typedef CSeqTable_multi_data	TInt_delta

typedef CScaled_int_multi_data	TInt_scaled

typedef CScaled_real_multi_data	TReal_scaled

typedef CBVector_data	TBit_bvector

typedef vector< char >	TInt1

typedef vector< Int2 >	TInt2

typedef vector< Int8 >	TInt8

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CSeqTable_multi_data (void)

	~CSeqTable_multi_data (void)

size_t	GetSize (void) const

bool	IsSet (size_t row_index) const

E_Choice	GetValueType (void) const

bool	CanGetInt (void) const

bool	CanGetReal (void) const

size_t	GetIntSize (void) const

bool	TryGetBool (size_t row, bool &v) const

bool	TryGetReal (size_t row, double &v) const

bool	TryGetInt1 (size_t row, Int1 &v) const

bool	TryGetInt1WithRounding (size_t row, Int1 &v) const

bool	TryGetInt2 (size_t row, Int2 &v) const

bool	TryGetInt2WithRounding (size_t row, Int2 &v) const

bool	TryGetInt4 (size_t row, Int4 &v) const

bool	TryGetInt4WithRounding (size_t row, Int4 &v) const

bool	TryGetInt8 (size_t row, Int8 &v) const

bool	TryGetInt8WithRounding (size_t row, Int8 &v) const

bool	TryGetInt (size_t row, int &v) const

bool	TryGetIntWithRounding (size_t row, int &v) const

const string *	GetStringPtr (size_t row) const

const TBytesValue *	GetBytesPtr (size_t row) const

bool	TryGetValue (size_t row, Int1 &v) const

bool	TryGetValue (size_t row, Int2 &v) const

bool	TryGetValue (size_t row, Int4 &v) const

bool	TryGetValue (size_t row, Int8 &v) const

bool	TryGetValue (size_t row, bool &v) const

bool	TryGetValue (size_t row, double &v) const

bool	TryGetValue (size_t row, string &v) const

bool	TryGetValue (size_t row, TBytesValue &v) const

void	ChangeTo (E_Choice type)

void	ChangeToBit (void)

void	ChangeToBit_bvector (void)

void	ChangeToInt1 (void)

void	ChangeToInt2 (void)

void	ChangeToInt4 (void)

void	ChangeToInt8 (void)

void	ChangeToInt (void)

void	ChangeToInt_delta (void)

void	ChangeToInt_scaled (int mul, int add)

void	ChangeToReal (void)

void	ChangeToReal_scaled (double mul, double add)

void	ChangeToString (const string *omitted_value=0)

void	ChangeToCommon_string (const string *omit_value=0)

void	ChangeToBytes (const TBytesValue *omitted_value=0)

void	ChangeToCommon_bytes (const TBytesValue *omit_value=0)

void	ResetSelection (void)
	Reset the selection (set it to e_not_set). More...

void	PostRead (void)

Public Member Functions inherited from CSeqTable_multi_data_Base
	CSeqTable_multi_data_Base (void)

virtual	~CSeqTable_multi_data_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

virtual void	Reset (void)
	Reset the whole object. More...

E_Choice	Which (void) const
	Which variant is currently selected. More...

void	CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...

void	ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...

void	Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...

void	Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...

bool	IsInt (void) const
	Check if variant Int is selected. More...

const TInt &	GetInt (void) const
	Get the variant data. More...

TInt &	SetInt (void)
	Select the variant. More...

bool	IsReal (void) const
	Check if variant Real is selected. More...

const TReal &	GetReal (void) const
	Get the variant data. More...

TReal &	SetReal (void)
	Select the variant. More...

bool	IsString (void) const
	Check if variant String is selected. More...

const TString &	GetString (void) const
	Get the variant data. More...

TString &	SetString (void)
	Select the variant. More...

bool	IsBytes (void) const
	Check if variant Bytes is selected. More...

const TBytes &	GetBytes (void) const
	Get the variant data. More...

TBytes &	SetBytes (void)
	Select the variant. More...

bool	IsCommon_string (void) const
	Check if variant Common_string is selected. More...

const TCommon_string &	GetCommon_string (void) const
	Get the variant data. More...

TCommon_string &	SetCommon_string (void)
	Select the variant. More...

void	SetCommon_string (TCommon_string &value)
	Select the variant and set its data. More...

bool	IsCommon_bytes (void) const
	Check if variant Common_bytes is selected. More...

const TCommon_bytes &	GetCommon_bytes (void) const
	Get the variant data. More...

TCommon_bytes &	SetCommon_bytes (void)
	Select the variant. More...

void	SetCommon_bytes (TCommon_bytes &value)
	Select the variant and set its data. More...

bool	IsBit (void) const
	Check if variant Bit is selected. More...

const TBit &	GetBit (void) const
	Get the variant data. More...

TBit &	SetBit (void)
	Select the variant. More...

bool	IsLoc (void) const
	Check if variant Loc is selected. More...

const TLoc &	GetLoc (void) const
	Get the variant data. More...

TLoc &	SetLoc (void)
	Select the variant. More...

bool	IsId (void) const
	Check if variant Id is selected. More...

const TId &	GetId (void) const
	Get the variant data. More...

TId &	SetId (void)
	Select the variant. More...

bool	IsInterval (void) const
	Check if variant Interval is selected. More...

const TInterval &	GetInterval (void) const
	Get the variant data. More...

TInterval &	SetInterval (void)
	Select the variant. More...

bool	IsInt_delta (void) const
	Check if variant Int_delta is selected. More...

const TInt_delta &	GetInt_delta (void) const
	Get the variant data. More...

TInt_delta &	SetInt_delta (void)
	Select the variant. More...

void	SetInt_delta (TInt_delta &value)
	Select the variant and set its data. More...

bool	IsInt_scaled (void) const
	Check if variant Int_scaled is selected. More...

const TInt_scaled &	GetInt_scaled (void) const
	Get the variant data. More...

TInt_scaled &	SetInt_scaled (void)
	Select the variant. More...

void	SetInt_scaled (TInt_scaled &value)
	Select the variant and set its data. More...

bool	IsReal_scaled (void) const
	Check if variant Real_scaled is selected. More...

const TReal_scaled &	GetReal_scaled (void) const
	Get the variant data. More...

TReal_scaled &	SetReal_scaled (void)
	Select the variant. More...

void	SetReal_scaled (TReal_scaled &value)
	Select the variant and set its data. More...

bool	IsBit_bvector (void) const
	Check if variant Bit_bvector is selected. More...

const TBit_bvector &	GetBit_bvector (void) const
	Get the variant data. More...

TBit_bvector &	SetBit_bvector (void)
	Select the variant. More...

void	SetBit_bvector (TBit_bvector &value)
	Select the variant and set its data. More...

bool	IsInt1 (void) const
	Check if variant Int1 is selected. More...

const TInt1 &	GetInt1 (void) const
	Get the variant data. More...

TInt1 &	SetInt1 (void)
	Select the variant. More...

bool	IsInt2 (void) const
	Check if variant Int2 is selected. More...

const TInt2 &	GetInt2 (void) const
	Get the variant data. More...

TInt2 &	SetInt2 (void)
	Select the variant. More...

bool	IsInt8 (void) const
	Check if variant Int8 is selected. More...

const TInt8 &	GetInt8 (void) const
	Get the variant data. More...

TInt8 &	SetInt8 (void)
	Select the variant. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Protected Member Functions
bool	x_TryGetInt8 (size_t row, Int8 &v, const char *type_name) const

void	x_ResetCache (void)

CIntDeltaSumCache &	x_GetIntDeltaCache (void) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Attributes
CRef< CIntDeltaSumCache >	m_Cache

Private Types
typedef CSeqTable_multi_data_Base	Tparent

Private Member Functions
	CSeqTable_multi_data (const CSeqTable_multi_data &value)

CSeqTable_multi_data &	operator= (const CSeqTable_multi_data &value)

Additional Inherited Members
Static Public Member Functions inherited from CSeqTable_multi_data_Base
static string	SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Detailed Description

Definition at line 59 of file SeqTable_multi_data.hpp.

Member Typedef Documentation

◆ TBytesValue

typedef vector<char> CSeqTable_multi_data::TBytesValue

Definition at line 135 of file SeqTable_multi_data.hpp.

◆ Tparent

typedef CSeqTable_multi_data_Base CSeqTable_multi_data::Tparent

private

Definition at line 61 of file SeqTable_multi_data.hpp.

Constructor & Destructor Documentation

◆ CSeqTable_multi_data() [1/2]

CSeqTable_multi_data::CSeqTable_multi_data ( void )

Definition at line 61 of file SeqTable_multi_data.cpp.

◆ ~CSeqTable_multi_data()

CSeqTable_multi_data::~CSeqTable_multi_data ( void )

Definition at line 67 of file SeqTable_multi_data.cpp.

◆ CSeqTable_multi_data() [2/2]

CSeqTable_multi_data::CSeqTable_multi_data ( const CSeqTable_multi_data & value )

private

Member Function Documentation

◆ CanGetInt()

bool CSeqTable_multi_data::CanGetInt ( void ) const

Definition at line 340 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Bit, CSeqTable_multi_data_Base::e_Int, CSeqTable_multi_data_Base::e_Int8, and GetValueType().

Referenced by ChangeToBit(), and ChangeToBit_bvector().

◆ CanGetReal()

bool CSeqTable_multi_data::CanGetReal ( void ) const

Definition at line 353 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Bit, CSeqTable_multi_data_Base::e_Int, CSeqTable_multi_data_Base::e_Int8, CSeqTable_multi_data_Base::e_Real, and GetValueType().

◆ ChangeTo()

void CSeqTable_multi_data::ChangeTo ( E_Choice type )

Definition at line 768 of file SeqTable_multi_data.cpp.

◆ ChangeToBit()

void CSeqTable_multi_data::ChangeToBit ( void )

◆ ChangeToBit_bvector()

void CSeqTable_multi_data::ChangeToBit_bvector ( void )

Definition at line 1310 of file SeqTable_multi_data.cpp.

References b, CanGetInt(), CSeqTable_multi_data_Base::GetBit(), GetSize(), i, CSeqTable_multi_data_Base::IsBit(), CSeqTable_multi_data_Base::IsBit_bvector(), NCBI_THROW, AutoPtr< X, Del >::release(), CSeqTable_multi_data_Base::SetBit_bvector(), CBVector_data::SetBitVector(), ncbi::grid::netcache::search::fields::size, and TryGetInt().

Referenced by ChangeTo().

◆ ChangeToBytes()

void CSeqTable_multi_data::ChangeToBytes ( const TBytesValue * omitted_value = 0 )

Definition at line 896 of file SeqTable_multi_data.cpp.

References arr, CCommonBytes_table_Base::GetBytes(), CSeqTable_multi_data_Base::GetCommon_bytes(), CCommonBytes_table_Base::GetIndexes(), CSeqTable_multi_data_Base::IsBytes(), CSeqTable_multi_data_Base::IsCommon_bytes(), ITERATE, NCBI_THROW, CSeqTable_multi_data_Base::SetBytes(), ncbi::grid::netcache::search::fields::size, swap(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToCommon_bytes()

void CSeqTable_multi_data::ChangeToCommon_bytes ( const TBytesValue * omit_value = 0 )

Definition at line 933 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::GetBytes(), CSeqTable_multi_data_Base::IsBytes(), CSeqTable_multi_data_Base::IsCommon_bytes(), ITERATE, ncbi::grid::netcache::search::fields::key, NCBI_THROW, and CSeqTable_multi_data_Base::SetCommon_bytes().

Referenced by ChangeTo().

◆ ChangeToCommon_string()

void CSeqTable_multi_data::ChangeToCommon_string ( const string * omit_value = 0 )

Definition at line 861 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::GetString(), CSeqTable_multi_data_Base::IsCommon_string(), CSeqTable_multi_data_Base::IsString(), ITERATE, ncbi::grid::netcache::search::fields::key, NCBI_THROW, and CSeqTable_multi_data_Base::SetCommon_string().

Referenced by ChangeTo().

◆ ChangeToInt()

void CSeqTable_multi_data::ChangeToInt ( void )

inline

Definition at line 187 of file SeqTable_multi_data.hpp.

References ChangeToInt4().

Referenced by ChangeTo().

◆ ChangeToInt1()

void CSeqTable_multi_data::ChangeToInt1 ( void )

Definition at line 1177 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsInt1(), CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetInt1(), swap(), TryGetInt1WithRounding(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToInt2()

void CSeqTable_multi_data::ChangeToInt2 ( void )

Definition at line 1195 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsInt2(), CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetInt2(), swap(), TryGetInt2WithRounding(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToInt4()

void CSeqTable_multi_data::ChangeToInt4 ( void )

Definition at line 1145 of file SeqTable_multi_data.cpp.

References arr, GetSize(), CSeqTable_multi_data_Base::IsInt(), CSeqTable_multi_data_Base::IsInt_delta(), CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetInt(), ncbi::grid::netcache::search::fields::size, swap(), TryGetInt(), TryGetIntWithRounding(), and rapidjson::value.

Referenced by ChangeToInt().

◆ ChangeToInt8()

void CSeqTable_multi_data::ChangeToInt8 ( void )

Definition at line 1213 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsInt8(), CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetInt8(), swap(), TryGetInt8WithRounding(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToInt_delta()

void CSeqTable_multi_data::ChangeToInt_delta ( void )

Definition at line 1113 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsInt(), CSeqTable_multi_data_Base::IsInt_delta(), NON_CONST_ITERATE, CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetInt(), CSeqTable_multi_data_Base::SetInt_delta(), swap(), TryGetInt(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToInt_scaled()

void CSeqTable_multi_data::ChangeToInt_scaled	(	int	mul,
		int	add
	)

◆ ChangeToReal()

void CSeqTable_multi_data::ChangeToReal ( void )

Definition at line 1231 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsReal(), CSeqTable_multi_data_Base::Reset(), row, CSeqTable_multi_data_Base::SetReal(), swap(), TryGetReal(), and rapidjson::value.

Referenced by ChangeTo().

◆ ChangeToReal_scaled()

void CSeqTable_multi_data::ChangeToReal_scaled	(	double	mul,
		double	add
	)

Definition at line 969 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::IsReal(), CSeqTable_multi_data_Base::IsReal_scaled(), NON_CONST_ITERATE, row, CSeqTable_multi_data_Base::SetReal(), CSeqTable_multi_data_Base::SetReal_scaled(), swap(), TryGetReal(), and rapidjson::value.

◆ ChangeToString()

void CSeqTable_multi_data::ChangeToString ( const string * omitted_value = 0 )

Definition at line 826 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::GetCommon_string(), CCommonString_table_Base::GetIndexes(), CCommonString_table_Base::GetStrings(), CSeqTable_multi_data_Base::IsCommon_string(), CSeqTable_multi_data_Base::IsString(), ITERATE, NCBI_THROW, CSeqTable_multi_data_Base::SetString(), ncbi::grid::netcache::search::fields::size, and swap().

Referenced by ChangeTo().

◆ GetBytesPtr()

const vector< char > * CSeqTable_multi_data::GetBytesPtr ( size_t row ) const

Definition at line 671 of file SeqTable_multi_data.cpp.

References arr, CCommonBytes_table_Base::GetBytes(), CSeqTable_multi_data_Base::GetBytes(), CSeqTable_multi_data_Base::GetCommon_bytes(), CCommonBytes_table_Base::GetIndexes(), CSeqTable_multi_data_Base::IsBytes(), CSeqTable_multi_data_Base::IsCommon_bytes(), NCBI_THROW, and row.

Referenced by TryGetValue().

◆ GetIntSize()

size_t CSeqTable_multi_data::GetIntSize ( void ) const

Definition at line 367 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Bit, CSeqTable_multi_data_Base::e_Bit_bvector, CSeqTable_multi_data_Base::e_Int, CSeqTable_multi_data_Base::e_Int1, CSeqTable_multi_data_Base::e_Int2, CSeqTable_multi_data_Base::e_Int8, CSeqTable_multi_data_Base::e_Int_delta, CSeqTable_multi_data_Base::e_Int_scaled, CSeqTable_multi_data_Base::GetInt_delta(), CSeqTable_multi_data_Base::GetInt_scaled(), CScaled_int_multi_data::GetIntSize(), GetIntSize(), and CSeqTable_multi_data_Base::Which().

Referenced by ChangeToInt_scaled(), GetIntSize(), and x_GetIntDeltaCache().

◆ GetSize()

size_t CSeqTable_multi_data::GetSize ( void ) const

Definition at line 391 of file SeqTable_multi_data.cpp.

Referenced by AddAssemblyUserFieldsFromSeqTable(), ChangeToBit(), ChangeToBit_bvector(), ChangeToInt4(), CSourceRequirements::CheckSourceQuals(), CInt4DeltaSumCache::GetDeltaSum4(), CInt8DeltaSumCache::GetDeltaSum8(), GetSize(), IsSet(), SaveTableRowAsListFile(), SeqTableFromAssemblyFields(), CInt4DeltaSumCache::x_GetDeltaSum2(), CInt8DeltaSumCache::x_GetDeltaSum2(), x_GetIntDeltaCache(), and x_TryGetInt8().

◆ GetStringPtr()

const string * CSeqTable_multi_data::GetStringPtr ( size_t row ) const

Definition at line 591 of file SeqTable_multi_data.cpp.

References arr, CSeqTable_multi_data_Base::GetCommon_string(), CCommonString_table_Base::GetIndexes(), CSeqTable_multi_data_Base::GetString(), CCommonString_table_Base::GetStrings(), CSeqTable_multi_data_Base::IsCommon_string(), CSeqTable_multi_data_Base::IsString(), NCBI_THROW, and row.

Referenced by TryGetValue().

◆ GetValueType()

CSeqTable_multi_data::E_Choice CSeqTable_multi_data::GetValueType ( void ) const

Definition at line 318 of file SeqTable_multi_data.cpp.

Referenced by CanGetInt(), CanGetReal(), GetValueType(), TryGetInt1WithRounding(), TryGetInt2WithRounding(), TryGetInt4WithRounding(), and TryGetInt8WithRounding().

◆ IsSet()

bool CSeqTable_multi_data::IsSet ( size_t row_index ) const

inline

Definition at line 71 of file SeqTable_multi_data.hpp.

References GetSize().

◆ operator=()

CSeqTable_multi_data& CSeqTable_multi_data::operator= ( const CSeqTable_multi_data & value )

private

◆ PostRead()

void CSeqTable_multi_data::PostRead ( void )

inline

Definition at line 205 of file SeqTable_multi_data.hpp.

References x_ResetCache().

◆ ResetSelection()

void CSeqTable_multi_data::ResetSelection ( void )

inlinevirtual

Reset the selection (set it to e_not_set).

Reimplemented from CSeqTable_multi_data_Base.

Definition at line 200 of file SeqTable_multi_data.hpp.

References CSeqTable_multi_data_Base::ResetSelection(), and x_ResetCache().

◆ TryGetBool()

bool CSeqTable_multi_data::TryGetBool	(	size_t	row,
		bool &	v
	)		const

Definition at line 488 of file SeqTable_multi_data.cpp.

References row, sx_DownCastInt8(), rapidjson::value, and x_TryGetInt8().

Referenced by TryGetValue().

◆ TryGetInt()

bool CSeqTable_multi_data::TryGetInt	(	size_t	row,
		int &	v
	)		const

inline

Definition at line 125 of file SeqTable_multi_data.hpp.

References row, and TryGetInt4().

Referenced by ChangeToBit(), ChangeToBit_bvector(), ChangeToInt4(), ChangeToInt_delta(), and ChangeToInt_scaled().

◆ TryGetInt1()

bool CSeqTable_multi_data::TryGetInt1	(	size_t	row,
		Int1 &	v
	)		const

Definition at line 496 of file SeqTable_multi_data.cpp.

References row, sx_DownCastInt8(), rapidjson::value, and x_TryGetInt8().

Referenced by TryGetInt1WithRounding(), and TryGetValue().

◆ TryGetInt1WithRounding()

bool CSeqTable_multi_data::TryGetInt1WithRounding	(	size_t	row,
		Int1 &	v
	)		const

Definition at line 619 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Real, GetValueType(), row, sx_Round(), TryGetInt1(), TryGetReal(), and rapidjson::value.

Referenced by ChangeToInt1().

◆ TryGetInt2()

bool CSeqTable_multi_data::TryGetInt2	(	size_t	row,
		Int2 &	v
	)		const

Definition at line 504 of file SeqTable_multi_data.cpp.

References row, sx_DownCastInt8(), rapidjson::value, and x_TryGetInt8().

Referenced by TryGetInt2WithRounding(), and TryGetValue().

◆ TryGetInt2WithRounding()

bool CSeqTable_multi_data::TryGetInt2WithRounding	(	size_t	row,
		Int2 &	v
	)		const

Definition at line 632 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Real, GetValueType(), row, sx_Round(), TryGetInt2(), TryGetReal(), and rapidjson::value.

Referenced by ChangeToInt2().

◆ TryGetInt4()

bool CSeqTable_multi_data::TryGetInt4	(	size_t	row,
		Int4 &	v
	)		const

Definition at line 512 of file SeqTable_multi_data.cpp.

References row, sx_DownCastInt8(), rapidjson::value, and x_TryGetInt8().

Referenced by TryGetInt(), TryGetInt4WithRounding(), and TryGetValue().

◆ TryGetInt4WithRounding()

bool CSeqTable_multi_data::TryGetInt4WithRounding	(	size_t	row,
		Int4 &	v
	)		const

Definition at line 645 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Real, GetValueType(), row, sx_Round(), TryGetInt4(), TryGetReal(), and rapidjson::value.

Referenced by TryGetIntWithRounding().

◆ TryGetInt8()

bool CSeqTable_multi_data::TryGetInt8	(	size_t	row,
		Int8 &	v
	)		const

Definition at line 567 of file SeqTable_multi_data.cpp.

References row, and x_TryGetInt8().

Referenced by ChangeToInt_scaled(), TryGetInt8WithRounding(), and TryGetValue().

◆ TryGetInt8WithRounding()

bool CSeqTable_multi_data::TryGetInt8WithRounding	(	size_t	row,
		Int8 &	v
	)		const

Definition at line 658 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Real, GetValueType(), row, sx_Round(), TryGetInt8(), TryGetReal(), and rapidjson::value.

Referenced by ChangeToInt8().

◆ TryGetIntWithRounding()

bool CSeqTable_multi_data::TryGetIntWithRounding	(	size_t	row,
		int &	v
	)		const

inline

Definition at line 128 of file SeqTable_multi_data.hpp.

References row, and TryGetInt4WithRounding().

Referenced by ChangeToInt4().

◆ TryGetReal()

bool CSeqTable_multi_data::TryGetReal	(	size_t	row,
		double &	v
	)		const

Definition at line 573 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::e_Real, CSeqTable_multi_data_Base::e_Real_scaled, CSeqTable_multi_data_Base::GetReal(), CSeqTable_multi_data_Base::GetReal_scaled(), row, sx_TryGet(), CScaled_real_multi_data::TryGetReal(), CSeqTable_multi_data_Base::Which(), and x_TryGetInt8().

Referenced by ChangeToReal(), ChangeToReal_scaled(), TryGetInt1WithRounding(), TryGetInt2WithRounding(), TryGetInt4WithRounding(), TryGetInt8WithRounding(), and TryGetValue().

◆ TryGetValue() [1/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		bool &	v
	)		const

inline

Definition at line 151 of file SeqTable_multi_data.hpp.

References row, and TryGetBool().

◆ TryGetValue() [2/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		double &	v
	)		const

inline

Definition at line 154 of file SeqTable_multi_data.hpp.

References row, and TryGetReal().

◆ TryGetValue() [3/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		Int1 &	v
	)		const

inline

Definition at line 139 of file SeqTable_multi_data.hpp.

References row, and TryGetInt1().

Referenced by CInt4DeltaSumCache::x_GetDeltaSum2(), and CInt8DeltaSumCache::x_GetDeltaSum2().

◆ TryGetValue() [4/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		Int2 &	v
	)		const

inline

Definition at line 142 of file SeqTable_multi_data.hpp.

References row, and TryGetInt2().

◆ TryGetValue() [5/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		Int4 &	v
	)		const

inline

Definition at line 145 of file SeqTable_multi_data.hpp.

References row, and TryGetInt4().

◆ TryGetValue() [6/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		Int8 &	v
	)		const

inline

Definition at line 148 of file SeqTable_multi_data.hpp.

References row, and TryGetInt8().

◆ TryGetValue() [7/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		string &	v
	)		const

inline

Definition at line 157 of file SeqTable_multi_data.hpp.

References GetStringPtr(), and row.

◆ TryGetValue() [8/8]

bool CSeqTable_multi_data::TryGetValue	(	size_t	row,
		TBytesValue &	v
	)		const

inline

Definition at line 164 of file SeqTable_multi_data.hpp.

References GetBytesPtr(), and row.

◆ x_GetIntDeltaCache()

CIntDeltaSumCache & CSeqTable_multi_data::x_GetIntDeltaCache ( void ) const

protected

Definition at line 81 of file SeqTable_multi_data.cpp.

References CSeqTable_multi_data_Base::GetInt_delta(), GetIntSize(), CRef< C, Locker >::GetNCPointerOrNull(), GetSize(), info, and m_Cache.

Referenced by x_TryGetInt8().

◆ x_ResetCache()

void CSeqTable_multi_data::x_ResetCache ( void )

protected

Definition at line 75 of file SeqTable_multi_data.cpp.

References m_Cache, and CRef< C, Locker >::Reset().

Referenced by PostRead(), and ResetSelection().

◆ x_TryGetInt8()

bool CSeqTable_multi_data::x_TryGetInt8	(	size_t	row,
		Int8 &	v,
		const char *	type_name
	)		const

protected

Definition at line 520 of file SeqTable_multi_data.cpp.

Referenced by TryGetBool(), TryGetInt1(), TryGetInt2(), TryGetInt4(), TryGetInt8(), and TryGetReal().

Member Data Documentation

◆ m_Cache

CRef<CIntDeltaSumCache> CSeqTable_multi_data::m_Cache

mutableprotected

Definition at line 217 of file SeqTable_multi_data.hpp.

Referenced by x_GetIntDeltaCache(), and x_ResetCache().

The documentation for this class was generated from the following files:

include/objects/seqtable/SeqTable_multi_data.hpp
src/objects/seqtable/SeqTable_multi_data.cpp

Classes

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TBytesValue

◆ Tparent

Constructor & Destructor Documentation

◆ CSeqTable_multi_data() [1/2]

◆ ~CSeqTable_multi_data()

◆ CSeqTable_multi_data() [2/2]

Member Function Documentation

◆ CanGetInt()

◆ CanGetReal()

◆ ChangeTo()

◆ ChangeToBit()

◆ ChangeToBit_bvector()

◆ ChangeToBytes()

◆ ChangeToCommon_bytes()

◆ ChangeToCommon_string()

◆ ChangeToInt()

◆ ChangeToInt1()

◆ ChangeToInt2()

◆ ChangeToInt4()

◆ ChangeToInt8()

◆ ChangeToInt_delta()

◆ ChangeToInt_scaled()

◆ ChangeToReal()

◆ ChangeToReal_scaled()

◆ ChangeToString()

◆ GetBytesPtr()

◆ GetIntSize()

◆ GetSize()

◆ GetStringPtr()

◆ GetValueType()

◆ IsSet()

◆ operator=()

◆ PostRead()

◆ ResetSelection()

◆ TryGetBool()

◆ TryGetInt()

◆ TryGetInt1()

◆ TryGetInt1WithRounding()

◆ TryGetInt2()

◆ TryGetInt2WithRounding()

◆ TryGetInt4()

◆ TryGetInt4WithRounding()

◆ TryGetInt8()

◆ TryGetInt8WithRounding()

◆ TryGetIntWithRounding()

◆ TryGetReal()

◆ TryGetValue() [1/8]

◆ TryGetValue() [2/8]

◆ TryGetValue() [3/8]

◆ TryGetValue() [4/8]

◆ TryGetValue() [5/8]

◆ TryGetValue() [6/8]

◆ TryGetValue() [7/8]

◆ TryGetValue() [8/8]

◆ x_GetIntDeltaCache()

◆ x_ResetCache()

◆ x_TryGetInt8()

Member Data Documentation

◆ m_Cache