Commit graph

651 commits

Author SHA1 Message Date
Emma Nechamkin
cb4866b93f
Adding eamlis and fuds data to legacy pollution in score (#1832)
Update to add EAMLIS and FUDS data to score
2022-08-18 13:32:29 -04:00
Matt Bowen
6e41e0d9f0
Add donut hole calculation to score (#1828)
Adds adjacency index to the pipeline. Requires thorough QA
2022-08-18 12:04:46 -04:00
Emma Nechamkin
88dc2e5a8e updating to avoid conflicts 2022-08-17 14:28:02 -04:00
Emma Nechamkin
7d89d41e49
Adding NLCD data (#1826)
Adding NLCD's natural space indicator end to end to the score.
2022-08-17 14:21:28 -04:00
Emma Nechamkin
2e05b1d60c Merge branch 'emma-nechamkin/release/score-narwhal' of github.com:usds/justice40-tool into emma-nechamkin/release/score-narwhal 2022-08-17 11:34:37 -04:00
Matt Bowen
49623e4da0
Add abandoned mine lands data (#1824)
* Add notebook to generate test data (#1780)

* Add Abandoned Mine Land data (#1780)

Using a similar structure but simpler apporach compared to FUDs, add an
indicator for whether a tract has an abandonded mine.

* Adding some detail to dataset readmes

Just a thought!

* Apply feedback from revieiw (#1780)

* Fixup bad string that broke test (#1780)

* Update a string that I should have renamed (#1780)

* Reduce number of threads to reduce memory pressure (#1780)

* Try not running geo data (#1780)

* Run the high-memory sets separately (#1780)

* Actually deduplicate (#1780)

* Add flag for memory intensive ETLs (#1780)

* Document new flag for datasets (#1780)

* Add flag for new datasets fro rebase (#1780)

Co-authored-by: Emma Nechamkin <97977170+emma-nechamkin@users.noreply.github.com>
2022-08-17 11:33:59 -04:00
Emma Nechamkin
981a36cfa3 first run -- adding NCLD data to the ETL, but not yet to the score 2022-08-17 11:11:11 -04:00
Emma Nechamkin
5e378aea81
Adding first street foundation data (#1823)
Adding FSF flood and wildfire risk datasets to the score.
2022-08-17 10:14:23 -04:00
Emma Nechamkin
ebac552d75
Adding DOT composite to travel score (#1820)
This adds the DOT dataset to the ETL and to the score. Note that currently we take a percentile of an average of percentiles.
2022-08-16 14:44:39 -04:00
Vim USDS
932179841f Merge branch 'emma-nechamkin/release/score-narwhal' of https://github.com/usds/justice40-tool into emma-nechamkin/release/score-narwhal 2022-08-16 10:36:04 -07:00
Vim USDS
d6c04b1308 Disable markdown check for link 2022-08-16 10:35:57 -07:00
Matt Bowen
d5fbb802e8
Add FUDS ETL (#1817)
* Add spatial join method (#1871)

Since we'll need to figure out the tracts for a large number of points
in future tickets, add a utility to handle grabbing the tract geometries
and adding tract data to a point dataset.

* Add FUDS, also jupyter lab (#1871)

* Add YAML configs for FUDS (#1871)

* Allow input geoid to be optional (#1871)

* Add FUDS ETL, tests, test-datae noteobook (#1871)

This adds the ETL class for Formerly Used Defense Sites (FUDS). This is
different from most other ETLs since these FUDS are not provided by
tract, but instead by geographic point, so we need to assign FUDS to
tracts and then do calculations from there.

* Floats -> Ints, as I intended (#1871)

* Floats -> Ints, as I intended (#1871)

* Formatting fixes (#1871)

* Add test false positive GEOIDs (#1871)

* Add gdal binaries (#1871)

* Refactor pandas code to be more idiomatic (#1871)

Per Emma, the more pandas-y way of doing my counts is using np.where to
add the values i need, then groupby and size. It is definitely more
compact, and also I think more correct!

* Update configs per Emma suggestions (#1871)

* Type fixed! (#1871)

* Remove spurious import from vscode (#1871)

* Snapshot update after changing col name (#1871)

* Move up GDAL (#1871)

* Adjust geojson strategy (#1871)

* Try running census separately first (#1871)

* Fix import order (#1871)

* Cleanup cache strategy (#1871)

* Download census data from S3 instead of re-calculating (#1871)

* Clarify pandas code per Emma (#1871)
2022-08-16 13:28:39 -04:00
Vim USDS
13e79087d1 Adding back MapComparison video 2022-08-16 10:14:32 -07:00
Emma Nechamkin
481a2a05f7
updated to fix linting errors (#1818)
Cleans and updates base branch
2022-08-11 16:34:56 -04:00
Emma Nechamkin
dcda155c95 fixing rebase 2022-08-11 12:39:54 -04:00
Emma Nechamkin
94cdc47cce Update etl_score_geo.py
Yikes! Fixing merge messup!
2022-08-11 12:38:32 -04:00
Matt Bowen
97e17546cc Refactor DOE Energy Burden and COI to use YAML (#1796)
* added tribalId for Supplemental dataset (#1804)

* Setting zoom levels for tribal map (#1810)

* NRI dataset and initial score YAML configuration (#1534)

* update be staging gha

* NRI dataset and initial score YAML configuration

* checkpoint

* adding data checks for release branch

* passing tests

* adding INPUT_EXTRACTED_FILE_NAME to base class

* lint

* columns to keep and tests

* update be staging gha

* checkpoint

* update be staging gha

* NRI dataset and initial score YAML configuration

* checkpoint

* adding data checks for release branch

* passing tests

* adding INPUT_EXTRACTED_FILE_NAME to base class

* lint

* columns to keep and tests

* checkpoint

* PR Review

* renoving source url

* tests

* stop execution of ETL if there's a YAML schema issue

* update be staging gha

* adding source url as class var again

* clean up

* force cache bust

* gha cache bust

* dynamically set score vars from YAML

* docsctrings

* removing last updated year - optional reverse percentile

* passing tests

* sort order

* column ordening

* PR review

* class level vars

* Updating DatasetsConfig

* fix pylint errors

* moving metadata hint back to code

Co-authored-by: lucasmbrown-usds <lucas.m.brown@omb.eop.gov>

* Correct copy typo (#1809)

* Add basic test suite for COI (#1518)

* Update COI to use new yaml (#1518)

* Add tests for DOE energy budren (1518

* Add dataset config for energy budren (1518)

* Refactor ETL to use datasets.yml (#1518)

* Add fake GEOIDs to COI tests (#1518)

* Refactor _setup_etl_instance_and_run_extract to base (#1518)

For the three classes we've done so far, a generic
_setup_etl_instance_and_run_extract will work fine, for the moment we
can reuse the same setup method until we decide future classes need more
flexibility --- but they can also always subclass so...

* Add output-path tests (#1518)

* Update YAML to match constant (#1518)

* Don't blindly set float format (#1518)

* Add defaults for extract (#1518)

* Run YAML load on all subclasses (#1518)

* Update description fields (#1518)

* Update YAML per final format (#1518)

* Update fixture tract IDs (#1518)

* Update base class refactor (#1518)

Now that NRI is final I needed to make a small number of updates to my
refactored code.

* Remove old comment (#1518)

* Fix type signature and return (#1518)

* Update per code review (#1518)

Co-authored-by: Jorge Escobar <83969469+esfoobar-usds@users.noreply.github.com>
Co-authored-by: lucasmbrown-usds <lucas.m.brown@omb.eop.gov>
Co-authored-by: Vim <86254807+vim-usds@users.noreply.github.com>
2022-08-11 12:38:28 -04:00
Emma Nechamkin
baa591a6c6 first run through 2022-08-11 12:33:46 -04:00
Emma Nechamkin
4f6a1b5286 added indoor plumbing to score housing burden 2022-08-11 12:33:46 -04:00
Emma Nechamkin
15450cf91f added indoor plumbing to score housing burden 2022-08-11 12:33:46 -04:00
Emma Nechamkin
8c7519063a added indoor plumbing to chas 2022-08-11 12:33:46 -04:00
Emma Nechamkin
0d90ae563a Changing LHE in tiles to a boolean (#1767)
also includes merging / clean up of the release
2022-08-11 12:33:46 -04:00
Emma Nechamkin
b0a728437c adds UST indicator (#1786)
adds leaky underground storage tanks
2022-08-11 12:33:46 -04:00
Emma Nechamkin
f6efdd4e14 Rescaling linguistic isolation (#1750)
Rescales linguistic isolation to drop puerto rico
2022-08-11 12:33:46 -04:00
Emma Nechamkin
2ab24c60fa updating ejscreen data, try two (#1747) 2022-08-11 12:33:46 -04:00
Emma Nechamkin
7559cf46f6 Emma nechamkin/holc patch (#1742)
Removing HOLC calculation from score narwhal.
2022-08-11 12:33:46 -04:00
Shelby Switzer
3071815158 Do not drop Guam and USVI from ETL (#1681)
* Remove code that drops Guam and USVI from ETL

* Add back code for dropping rows by FIPS code

We may want this functionality, so let's keep it and just make the constant currently be an empty array.

Co-authored-by: Shelby Switzer <shelbyswitzer@gmail.com>
2022-08-11 12:33:46 -04:00
Emma Nechamkin
b41a2870f3 updating 2022-08-11 12:33:46 -04:00
Shelby Switzer
05748c9fa2 Update backend for Puerto Rico (#1686)
* Update PR threshold count to 10

We now show 10 indicators for PR. See the discussion on the github issue for more info: https://github.com/usds/justice40-tool/issues/1621

* Do not use linguistic iso for Puerto Rico

Closes 1350.

Co-authored-by: Shelby Switzer <shelbyswitzer@gmail.com>
2022-08-11 12:33:46 -04:00
Emma Nechamkin
1782d022a9 Adding HOLC indicator (#1579)
Added HOLC indicator (Historic Redlining Score) from NCRC work; included 3.25 cutoff and low income as part of the housing burden category.
2022-08-11 12:33:46 -04:00
Emma Nechamkin
f047ca9d83 Imputing income using geographic neighbors (#1559)
Imputes income field with a light refactor. Needs more refactor and more tests (I spotchecked). Next ticket will check and address but a lot of "narwhal" architecture is here.
2022-08-11 12:33:45 -04:00
Emma Nechamkin
485a9a8316 Create deploy_be_staging.yml (#1575) 2022-08-11 12:33:45 -04:00
Emma Nechamkin
d55b7c016a
Update etl_score_geo.py
Yikes! Fixing merge messup!
2022-08-11 09:50:44 -04:00
Matt Bowen
9635ef5ee2
Refactor DOE Energy Burden and COI to use YAML (#1796)
* added tribalId for Supplemental dataset (#1804)

* Setting zoom levels for tribal map (#1810)

* NRI dataset and initial score YAML configuration (#1534)

* update be staging gha

* NRI dataset and initial score YAML configuration

* checkpoint

* adding data checks for release branch

* passing tests

* adding INPUT_EXTRACTED_FILE_NAME to base class

* lint

* columns to keep and tests

* update be staging gha

* checkpoint

* update be staging gha

* NRI dataset and initial score YAML configuration

* checkpoint

* adding data checks for release branch

* passing tests

* adding INPUT_EXTRACTED_FILE_NAME to base class

* lint

* columns to keep and tests

* checkpoint

* PR Review

* renoving source url

* tests

* stop execution of ETL if there's a YAML schema issue

* update be staging gha

* adding source url as class var again

* clean up

* force cache bust

* gha cache bust

* dynamically set score vars from YAML

* docsctrings

* removing last updated year - optional reverse percentile

* passing tests

* sort order

* column ordening

* PR review

* class level vars

* Updating DatasetsConfig

* fix pylint errors

* moving metadata hint back to code

Co-authored-by: lucasmbrown-usds <lucas.m.brown@omb.eop.gov>

* Correct copy typo (#1809)

* Add basic test suite for COI (#1518)

* Update COI to use new yaml (#1518)

* Add tests for DOE energy budren (1518

* Add dataset config for energy budren (1518)

* Refactor ETL to use datasets.yml (#1518)

* Add fake GEOIDs to COI tests (#1518)

* Refactor _setup_etl_instance_and_run_extract to base (#1518)

For the three classes we've done so far, a generic
_setup_etl_instance_and_run_extract will work fine, for the moment we
can reuse the same setup method until we decide future classes need more
flexibility --- but they can also always subclass so...

* Add output-path tests (#1518)

* Update YAML to match constant (#1518)

* Don't blindly set float format (#1518)

* Add defaults for extract (#1518)

* Run YAML load on all subclasses (#1518)

* Update description fields (#1518)

* Update YAML per final format (#1518)

* Update fixture tract IDs (#1518)

* Update base class refactor (#1518)

Now that NRI is final I needed to make a small number of updates to my
refactored code.

* Remove old comment (#1518)

* Fix type signature and return (#1518)

* Update per code review (#1518)

Co-authored-by: Jorge Escobar <83969469+esfoobar-usds@users.noreply.github.com>
Co-authored-by: lucasmbrown-usds <lucas.m.brown@omb.eop.gov>
Co-authored-by: Vim <86254807+vim-usds@users.noreply.github.com>
2022-08-10 16:02:59 -04:00
Emma Nechamkin
ed9b7172f7 first run through 2022-08-10 12:18:30 -04:00
Emma Nechamkin
3aa03f1669 added indoor plumbing to score housing burden 2022-08-10 12:18:30 -04:00
Emma Nechamkin
19d3bdee5a added indoor plumbing to score housing burden 2022-08-10 12:18:27 -04:00
Emma Nechamkin
cac1e0406f added indoor plumbing to chas 2022-08-10 12:18:01 -04:00
Emma Nechamkin
bbb5bbc60a Changing LHE in tiles to a boolean (#1767)
also includes merging / clean up of the release
2022-08-10 12:17:58 -04:00
Emma Nechamkin
daf188c1f3 adds UST indicator (#1786)
adds leaky underground storage tanks
2022-08-10 12:15:13 -04:00
Emma Nechamkin
29419dd2fd Rescaling linguistic isolation (#1750)
Rescales linguistic isolation to drop puerto rico
2022-08-10 12:13:51 -04:00
Emma Nechamkin
e98282dcef updating ejscreen data, try two (#1747) 2022-08-10 12:13:48 -04:00
Emma Nechamkin
002cddf68e Emma nechamkin/holc patch (#1742)
Removing HOLC calculation from score narwhal.
2022-08-10 12:13:16 -04:00
Vim
150b793fee
Correct copy typo (#1809) 2022-08-10 09:13:06 -07:00
Shelby Switzer
f8a6567cde Do not drop Guam and USVI from ETL (#1681)
* Remove code that drops Guam and USVI from ETL

* Add back code for dropping rows by FIPS code

We may want this functionality, so let's keep it and just make the constant currently be an empty array.

Co-authored-by: Shelby Switzer <shelbyswitzer@gmail.com>
2022-08-10 12:12:12 -04:00
Emma Nechamkin
92d68ba8be updating 2022-08-10 12:12:12 -04:00
Shelby Switzer
2e38aaa369 Update backend for Puerto Rico (#1686)
* Update PR threshold count to 10

We now show 10 indicators for PR. See the discussion on the github issue for more info: https://github.com/usds/justice40-tool/issues/1621

* Do not use linguistic iso for Puerto Rico

Closes 1350.

Co-authored-by: Shelby Switzer <shelbyswitzer@gmail.com>
2022-08-10 12:12:12 -04:00
Emma Nechamkin
3a960018f9 Adding HOLC indicator (#1579)
Added HOLC indicator (Historic Redlining Score) from NCRC work; included 3.25 cutoff and low income as part of the housing burden category.
2022-08-10 12:11:17 -04:00
Emma Nechamkin
f680d867c7 Imputing income using geographic neighbors (#1559)
Imputes income field with a light refactor. Needs more refactor and more tests (I spotchecked). Next ticket will check and address but a lot of "narwhal" architecture is here.
2022-08-10 12:09:30 -04:00
Emma Nechamkin
218fa48b85 Create deploy_be_staging.yml (#1575) 2022-08-10 12:07:13 -04:00