* removed inplace argument to prevent copies of dataframe to be set and chained assignment to propogate and raise exception
* removed inplace argument to prevent copies of dataframe to be set and chained assignment to propogate and raise exception
* remove superfluous pandas options that affects flake results
* remove (again) the same chained assignment from previous merge
Co-authored-by: Saran Ahluwalia <sarahluw@cisco.com>
* WIP
* Create ScoreCalculator
This calculates all the factors for score L for now (with placeholder
formulae because this is a WIP). I think ideallly we'll want to
refactor all the score code to be extracted into this or similar
classes.
* Add factor logic for score L
Updated factor logic to match score L factors methodology.
Still need to get the Score L field itself working.
Cleanup needed: Pull field names into constants file, extract all score
calculation into score calculator
* Update thresholds and get score L calc working
* Update header name for consistency and update comparison tool
* Initial move of score to score calculator
* WIP big refactor
* Continued WIP on score refactor
* WIP score refactor
* Get to a working score-run
* Refactor to pass df to score init
This makes it easier to pass df around within a class with multiple
methods that require df.
* Updates from Black
* Updates from linting
* Use named imports instead of wildcard; log more
* Additional refactors
* move more field names to field_names constants file
* import constants without a relative path (would break docker)
* run linting
* raise error if add_columns is not implemented in a child class
* Refactor dict to namedtuple in score c
* Update L to use all percentile field
* change high school ed field in L back
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
* Create ScoreCalculator
This calculates all the factors for score L for now (with placeholder
formulae because this is a WIP). I think ideallly we'll want to
refactor all the score code to be extracted into this or similar
classes.
* Add factor logic for score L
Updated factor logic to match score L factors methodology.
Still need to get the Score L field itself working.
Cleanup needed: Pull field names into constants file, extract all score
calculation into score calculator
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
Co-authored-by: lucasmbrown-usds <lucas.m.brown@omb.eop.gov>
* Adds dev dependencies to requirements.txt and re-runs black on codebase
* Adds test and code for national risk index etl, still in progress
* Removes test_data from .gitignore
* Adds test data to nation_risk_index tests
* Creates tests and ETL class for NRI data
* Adds tests for load() and transform() methods of NationalRiskIndexETL
* Updates README.md with info about the NRI dataset
* Adds to dos
* Moves tests and test data into a tests/ dir in national_risk_index
* Moves tmp_dir for tests into data/tmp/tests/
* Promotes fixtures to conftest and relocates national_risk_index tests:
The relocation of national_risk_index tests is necessary because tests
can only use fixtures specified in conftests within the same package
* Fixes issue with df.equals() in test_transform()
* Files reformatted by black
* Commit changes to other files after re-running black
* Fixes unused import that caused lint checks to fail
* Moves tests/ directory to app root for data_pipeline
* Adds new methods to ExtractTransformLoad base class:
- __init__() Initializes class attributes
- _get_census_fips_codes() Loads a dataframe with the fips codes for
census block group and tract
- validate_init() Checks that the class was initialized correctly
- validate_output() Checks that the output was loaded correctly
* Adds test for ExtractTransformLoad.__init__() and base.py
* Fixes failing flake8 test
* Changes geo_col to geoid_col and changes is_dataset to is_census in yaml
* Adds test for validate_output()
* Adds remaining tests
* Removes is_dataset from init method
* Makes CENSUS_CSV a class attribute instead of a class global:
This ensures that CENSUS_CSV is only set when the ETL class is for a
non-census dataset and removes the need to overwrite the value in
mock_etl fixture
* Re-formats files with black and fixes broken tox tests
* Change downloadable file names
* Remove constants because we're dynamically creating these
* Update to "communities" for the descriptor word based on team convo
* Add timestamp in 2020-09-20-0930 format because I personally think
this is the best ^.^
* Add a CLI command to run ETL Score Post so that we don't have to
run the score generation just to get new downloadable files.
* Also make sure the old downloadable files are cleaned up on the
run of this command.
* Remove unused library, thanks pylint!
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
* Add pytest to tox run in CI/CD
* Try fixing tox dependencies for pytest
* update poetry to get ci/cd passing
* Run poetry export with --dev flag to include dev dependencies such as pytest
* WIP updating test fixtures to include PDF
* Remove dev dependencies from reqs and add pytest to envlist to make build faster
* passing score_post tests
* Add pytest tox (#729)
* Fix failing pytest
* Fixes failing tox tests and updates requirements.txt to include dev deps
* pickle protocol 4
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
Co-authored-by: Jorge Escobar <jorge.e.escobar@omb.eop.gov>
Co-authored-by: Billy Daly <williamdaly422@gmail.com>
Co-authored-by: Jorge Escobar <83969469+esfoobar-usds@users.noreply.github.com>
* Update downloadable zip file
* Don't use spaces in the name, as per #620
* Add the score D columns, as per #596
* fix paths and directories in etl_score_post
while the tests seemed to be passing, I encountered an error when
running poetry run score, which was caused by us creating a directory
called <name>.csv, instead of creating the parent directory.
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
* Fixes#341 -
As a J40 developer, I want to write Unit Tests for the ETL files,
so that tests are run on each commit
* Location bug
* Adding Load tests
* Fixing XLSX filename
* Adding downloadable zip test
* updating pickle
* Fixing pylint warnings
* Updte readme to correct some typos and reorganize test content structure
* Removing unused schemas file, adding details to readme around pickles, per PR feedback
* Update test to pass with Score D added to score file; update path in readme
* fix requirements.txt after merge
* fix poetry.lock after merge
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
* WIP refactor
* Exract score calculations into their own methods
* do all initial df prep in single method
* Fix error in docs for running etl for single dataset
* WIP understanding HUD and linguistic iso data
* Add comments from initial group review on PR
Co-authored-by: Shelby Switzer <shelby.switzer@cms.hhs.gov>
* Adds dev dependencies to requirements.txt and re-runs black on codebase
* Adds test and code for national risk index etl, still in progress
* Removes test_data from .gitignore
* Adds test data to nation_risk_index tests
* Creates tests and ETL class for NRI data
* Adds tests for load() and transform() methods of NationalRiskIndexETL
* Updates README.md with info about the NRI dataset
* Adds to dos
* Moves tests and test data into a tests/ dir in national_risk_index
* Moves tmp_dir for tests into data/tmp/tests/
* Promotes fixtures to conftest and relocates national_risk_index tests:
The relocation of national_risk_index tests is necessary because tests
can only use fixtures specified in conftests within the same package
* Fixes issue with df.equals() in test_transform()
* Files reformatted by black
* Commit changes to other files after re-running black
* Fixes unused import that caused lint checks to fail
* Moves tests/ directory to app root for data_pipeline
* Revert "dockerize front end (#558)"
This reverts commit 89c23faf7a.
* dockerize frontend
- adds score server and website docker compose
- creates docker ignore
- adds .env.* for dev, prod and local
- adds dockerfile for website
- adds env to gatsby-config
- adds hostaddress to develop / start script
- adds istructions in README for running docker
- replaces fixed URLS with ones based on env vars
- creates a score server dockerfile
* updates README to change map tiles source
* adds env DATA_SOURCE:development to deploy GHA
* capitalize readme
* initial docker
* adds concurrency to be able to run yarn install
* adds 0.0.0.0 to allow docker access
* adds web service
* adds env variables
* updates root path
* adds volumes
* adds docker to readme
* adds score server client docker
* docker updates after convo
* speeds up build and removes env vars
* adds client as volume
* updates to docker setup
* checkpoint
* updates the docker file
* adds .env.* files
* replaces serve with http-server for cors
Co-authored-by: Jorge Escobar <jorge.e.escobar@omb.eop.gov>
