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<H1>[C++ Toolkit ANNOUNCE] New taxonomy lookup is coming</H1>
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<B>Soussov, Vladimir (NIH/NLM/NCBI) [E]</B>
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<A HREF="mailto:cpp-announce%40ncbi.nlm.nih.gov?Subject=Re%3A%20%5BC%2B%2B%20Toolkit%20ANNOUNCE%5D%20New%20taxonomy%20lookup%20is%20coming&In-Reply-To=%3CE61F2527F3CC2D41AB3B6F3926AB4DE667C12829%40msgb02.nih.gov%3E"
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TITLE="[C++ Toolkit ANNOUNCE] New taxonomy lookup is coming">soussov at ncbi.nlm.nih.gov
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<I>Tue Jun 6 15:14:05 EDT 2017</I>
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<LI>Previous message: <A HREF="000142.html">[C++ Toolkit ANNOUNCE] Four C Toolkit Tools to be retired June 1, 2017
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New "subspecies-aware" taxonomy lookup is about to be unveiled per TM-504. It will affect results from objects::CTaxon1 and
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objects::CTaxon3 classes. It's main difference from old version is promotion of orgname modifiers' values (org-ref.orgname.mod) of type sub-species, variety, and forma to taxonomic name and try to get database match for it. It also populates org-ref.orgname.attrib with value "specified" for well-specified name (usually in binomial form 'Genus species' or trinomial form 'Genus species subspecies').
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This new lookup algorithm makes obsolete old C Toolkit library ncbitxc2 which will be removed from C Toolkit libraries at $NCBI/ncbi/lib/ shortly per CCC-4. Instead, C developers can use C++ wrapper library ncbitxc2cxx available at $NCBI/c++/{Debug|Release}/lib/
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