53 lines
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2.3 KiB
HTML
53 lines
No EOL
2.3 KiB
HTML
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<h3>Seq-inst</h3><pre>Defined in file <a href="seq.asn.html">seq.asn</a>
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C++ class: <a href="../doxyhtml/classCSeq__inst.html">CSeq_inst</a>
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Seq-inst ::= SEQUENCE { -- the sequence data itself
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repr ENUMERATED { -- representation class
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not-set (0) , -- empty
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virtual (1) , -- no seq data
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raw (2) , -- continuous sequence
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seg (3) , -- segmented sequence
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const (4) , -- constructed sequence
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ref (5) , -- reference to another sequence
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consen (6) , -- consensus sequence or pattern
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map (7) , -- ordered map of any kind
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delta (8) , -- sequence made by changes (delta) to others
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other (255) } ,
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mol ENUMERATED { -- molecule class in living organism
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not-set (0) , -- > cdna = rna
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dna (1) ,
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rna (2) ,
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aa (3) ,
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na (4) , -- just a nucleic acid
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other (255) } ,
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length INTEGER OPTIONAL , -- length of sequence in residues
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fuzz <a href="Int-fuzz.html">Int-fuzz</a> OPTIONAL , -- length uncertainty
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topology ENUMERATED { -- topology of molecule
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not-set (0) ,
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linear (1) ,
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circular (2) ,
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tandem (3) , -- some part of tandem repeat
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other (255) } DEFAULT linear ,
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strand ENUMERATED { -- strandedness in living organism
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not-set (0) ,
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ss (1) , -- single strand
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ds (2) , -- double strand
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mixed (3) ,
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other (255) } OPTIONAL , -- default ds for DNA, ss for RNA, pept
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seq-data <a href="Seq-data.html">Seq-data</a> OPTIONAL , -- the sequence
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ext <a href="Seq-ext.html">Seq-ext</a> OPTIONAL , -- extensions for special types
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hist <a href="Seq-hist.html">Seq-hist</a> OPTIONAL } -- sequence history</pre>
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