Seq-inst

Defined in file seq.asn
C++ class: CSeq_inst


Seq-inst ::= SEQUENCE {            -- the sequence data itself
    repr ENUMERATED {              -- representation class
        not-set (0) ,              -- empty
        virtual (1) ,              -- no seq data
        raw (2) ,                  -- continuous sequence
        seg (3) ,                  -- segmented sequence
        const (4) ,                -- constructed sequence
        ref (5) ,                  -- reference to another sequence
        consen (6) ,               -- consensus sequence or pattern
        map (7) ,                  -- ordered map of any kind
        delta (8) ,              -- sequence made by changes (delta) to others
        other (255) } ,
    mol ENUMERATED {               -- molecule class in living organism
        not-set (0) ,              --   > cdna = rna
        dna (1) ,
        rna (2) ,
        aa (3) ,
        na (4) ,                   -- just a nucleic acid
        other (255) } ,
    length INTEGER OPTIONAL ,      -- length of sequence in residues
    fuzz Int-fuzz OPTIONAL ,       -- length uncertainty
    topology ENUMERATED {          -- topology of molecule
        not-set (0) ,
        linear (1) ,
        circular (2) ,
        tandem (3) ,               -- some part of tandem repeat
        other (255) } DEFAULT linear ,
    strand ENUMERATED {            -- strandedness in living organism
        not-set (0) ,
        ss (1) ,                   -- single strand
        ds (2) ,                   -- double strand
        mixed (3) ,
        other (255) } OPTIONAL ,   -- default ds for DNA, ss for RNA, pept
    seq-data Seq-data OPTIONAL ,   -- the sequence
    ext Seq-ext OPTIONAL ,         -- extensions for special types
    hist Seq-hist OPTIONAL }       -- sequence history