82 lines
No EOL
3.7 KiB
HTML
82 lines
No EOL
3.7 KiB
HTML
<!DOCTYPE HTML>
|
|
<html>
|
|
<head>
|
|
<title>MolInfo</title>
|
|
<script type="text/javascript" src="/core/jquery/jquery-3.6.0.min.js">
|
|
</script>
|
|
<script type="text/javascript">
|
|
jQuery.getScript("/core/alerts/alerts.js", function () { galert(['pre']) });
|
|
</script>
|
|
</head>
|
|
<body>
|
|
<h3>MolInfo</h3><pre>Defined in file <a href="seq.asn.html">seq.asn</a>
|
|
C++ class: <a href="../doxyhtml/classCMolInfo.html">CMolInfo</a>
|
|
|
|
|
|
MolInfo ::= SEQUENCE {
|
|
biomol INTEGER {
|
|
unknown (0) ,
|
|
genomic (1) ,
|
|
pre-RNA (2) , -- precursor RNA of any sort really
|
|
mRNA (3) ,
|
|
rRNA (4) ,
|
|
tRNA (5) ,
|
|
snRNA (6) ,
|
|
scRNA (7) ,
|
|
peptide (8) ,
|
|
other-genetic (9) , -- other genetic material
|
|
genomic-mRNA (10) , -- reported a mix of genomic and cdna sequence
|
|
cRNA (11) , -- viral RNA genome copy intermediate
|
|
snoRNA (12) , -- small nucleolar RNA
|
|
transcribed-RNA (13) , -- transcribed RNA other than existing classes
|
|
ncRNA (14) ,
|
|
tmRNA (15) ,
|
|
other (255) } DEFAULT unknown ,
|
|
tech INTEGER {
|
|
unknown (0) ,
|
|
standard (1) , -- standard sequencing
|
|
est (2) , -- Expressed Sequence Tag
|
|
sts (3) , -- Sequence Tagged Site
|
|
survey (4) , -- one-pass genomic sequence
|
|
genemap (5) , -- from genetic mapping techniques
|
|
physmap (6) , -- from physical mapping techniques
|
|
derived (7) , -- derived from other data, not a primary entity
|
|
concept-trans (8) , -- conceptual translation
|
|
seq-pept (9) , -- peptide was sequenced
|
|
both (10) , -- concept transl. w/ partial pept. seq.
|
|
seq-pept-overlap (11) , -- sequenced peptide, ordered by overlap
|
|
seq-pept-homol (12) , -- sequenced peptide, ordered by homology
|
|
concept-trans-a (13) , -- conceptual transl. supplied by author
|
|
htgs-1 (14) , -- unordered High Throughput sequence contig
|
|
htgs-2 (15) , -- ordered High Throughput sequence contig
|
|
htgs-3 (16) , -- finished High Throughput sequence
|
|
fli-cdna (17) , -- full length insert cDNA
|
|
htgs-0 (18) , -- single genomic reads for coordination
|
|
htc (19) , -- high throughput cDNA
|
|
wgs (20) , -- whole genome shotgun sequencing
|
|
barcode (21) , -- barcode of life project
|
|
composite-wgs-htgs (22) , -- composite of WGS and HTGS
|
|
tsa (23) , -- transcriptome shotgun assembly
|
|
targeted (24) , -- targeted locus sets/studies
|
|
other (255) } -- use Source.techexp
|
|
DEFAULT unknown ,
|
|
techexp VisibleString OPTIONAL , -- explanation if tech not enough
|
|
--
|
|
-- Completeness is not indicated in most records. For genomes, assume
|
|
-- the sequences are incomplete unless specifically marked as complete.
|
|
-- For mRNAs, assume the ends are not known exactly unless marked as
|
|
-- having the left or right end.
|
|
--
|
|
completeness INTEGER {
|
|
unknown (0) ,
|
|
complete (1) , -- complete biological entity
|
|
partial (2) , -- partial but no details given
|
|
no-left (3) , -- missing 5' or NH3 end
|
|
no-right (4) , -- missing 3' or COOH end
|
|
no-ends (5) , -- missing both ends
|
|
has-left (6) , -- 5' or NH3 end present
|
|
has-right (7) , -- 3' or COOH end present
|
|
other (255) } DEFAULT unknown ,
|
|
gbmoltype VisibleString OPTIONAL } -- identifies particular ncRNA</pre>
|
|
</body>
|
|
</html> |