MolInfo

Defined in file seq.asn
C++ class: CMolInfo


MolInfo ::= SEQUENCE {
    biomol INTEGER {
        unknown (0) ,
        genomic (1) ,
        pre-RNA (2) ,              -- precursor RNA of any sort really
        mRNA (3) ,
        rRNA (4) ,
        tRNA (5) ,
        snRNA (6) ,
        scRNA (7) ,
        peptide (8) ,
        other-genetic (9) ,      -- other genetic material
        genomic-mRNA (10) ,      -- reported a mix of genomic and cdna sequence
        cRNA (11) ,              -- viral RNA genome copy intermediate
        snoRNA (12) ,            -- small nucleolar RNA
        transcribed-RNA (13) ,   -- transcribed RNA other than existing classes
        ncRNA (14) ,
        tmRNA (15) ,
        other (255) } DEFAULT unknown ,
    tech INTEGER {
        unknown (0) ,
        standard (1) ,          -- standard sequencing
        est (2) ,               -- Expressed Sequence Tag
        sts (3) ,               -- Sequence Tagged Site
        survey (4) ,            -- one-pass genomic sequence
        genemap (5) ,           -- from genetic mapping techniques
        physmap (6) ,           -- from physical mapping techniques
        derived (7) ,           -- derived from other data, not a primary entity
        concept-trans (8) ,     -- conceptual translation
        seq-pept (9) ,          -- peptide was sequenced
        both (10) ,             -- concept transl. w/ partial pept. seq.
        seq-pept-overlap (11) , -- sequenced peptide, ordered by overlap
        seq-pept-homol (12) ,   -- sequenced peptide, ordered by homology
        concept-trans-a (13) ,  -- conceptual transl. supplied by author
        htgs-1 (14) ,           -- unordered High Throughput sequence contig
        htgs-2 (15) ,           -- ordered High Throughput sequence contig
        htgs-3 (16) ,           -- finished High Throughput sequence
        fli-cdna (17) ,         -- full length insert cDNA
        htgs-0 (18) ,           -- single genomic reads for coordination
        htc (19) ,              -- high throughput cDNA
        wgs (20) ,              -- whole genome shotgun sequencing
        barcode (21) ,          -- barcode of life project
        composite-wgs-htgs (22) , -- composite of WGS and HTGS
        tsa (23) ,              -- transcriptome shotgun assembly
        targeted (24) ,         -- targeted locus sets/studies
        other (255) }           -- use Source.techexp
               DEFAULT unknown ,
    techexp VisibleString OPTIONAL ,   -- explanation if tech not enough
    --
    -- Completeness is not indicated in most records.  For genomes, assume
    -- the sequences are incomplete unless specifically marked as complete.
    -- For mRNAs, assume the ends are not known exactly unless marked as
    -- having the left or right end.
    --
    completeness INTEGER {
      unknown (0) ,
      complete (1) ,                   -- complete biological entity
      partial (2) ,                    -- partial but no details given
      no-left (3) ,                    -- missing 5' or NH3 end
      no-right (4) ,                   -- missing 3' or COOH end
      no-ends (5) ,                    -- missing both ends
      has-left (6) ,                   -- 5' or NH3 end present
      has-right (7) ,                  -- 3' or COOH end present
      other (255) } DEFAULT unknown ,
    gbmoltype VisibleString OPTIONAL } -- identifies particular ncRNA