Search Toolkit Book for BlastSeqSrc
Complete type definition of Blast Sequence Source ADT. More...
Collaboration diagram for BlastSeqSrc:
Public Attributes | |
| BlastSeqSrcConstructor | NewFnPtr |
| Constructor. More... | |
| BlastSeqSrcDestructor | DeleteFnPtr |
| Destructor. More... | |
| BlastSeqSrcCopier | CopyFnPtr |
| Copier. More... | |
| SetInt4FnPtr | SetNumberOfThreads |
| Set number of threads. More... | |
| GetInt4FnPtr | GetNumSeqs |
| Get number of sequences in set. More... | |
| GetInt4FnPtr | GetNumSeqsStats |
| Number of sequences for statistical purposes. More... | |
| GetInt4FnPtr | GetMaxSeqLen |
| Get length of longest seq in set. More... | |
| GetInt4FnPtr | GetMinSeqLen |
| Get length of longest seq in set. More... | |
| GetInt4FnPtr | GetAvgSeqLen |
| Get average length of sequences in the set. More... | |
| GetInt8FnPtr | GetTotLen |
| Get tot length of all seqs in set. More... | |
| GetInt8FnPtr | GetTotLenStats |
| Total length of all seqs for statistical purposes. More... | |
| GetStrFnPtr | GetName |
| Get the name of the database. More... | |
| GetBoolFnPtr | GetIsProt |
| Find if database is a protein or nucleotide. More... | |
| GetBoolFnPtr | GetSupportsPartialFetching |
| Find if database supports partial fetching. More... | |
| SetSeqRangeFnPtr | SetSeqRange |
| Setting ranges for partial fetching. More... | |
| GetSeqBlkFnPtr | GetSequence |
| Retrieve individual sequence. More... | |
| GetInt4FnPtr | GetSeqLen |
| Retrieve given sequence length. More... | |
| ReleaseSeqBlkFnPtr | ReleaseSequence |
| Deallocate individual sequence (if applicable) More... | |
| AdvanceIteratorFnPtr | IterNext |
| Gets next oid from the iterator. More... | |
| ResetChunkIteratorFnPtr | ResetChunkIterator |
| Reset the implementation's chunk "bookmark". More... | |
| void * | DataStructure |
| ADT holding the sequence data. More... | |
| char * | InitErrorStr |
| initialization error string More... | |
Detailed Description
Complete type definition of Blast Sequence Source ADT.
The members of this structure should only be accessed by BlastSeqSrc implementations using the _BlastSeqSrcImpl_* functions.
Definition at line 43 of file blast_seqsrc.c.
Member Data Documentation
◆ CopyFnPtr
| BlastSeqSrcCopier BlastSeqSrc::CopyFnPtr |
◆ DataStructure
| void* BlastSeqSrc::DataStructure |
ADT holding the sequence data.
Definition at line 82 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetAvgSeqLen(), BlastSeqSrcGetIsProt(), BlastSeqSrcGetMaxSeqLen(), BlastSeqSrcGetMinSeqLen(), BlastSeqSrcGetName(), BlastSeqSrcGetNumSeqs(), BlastSeqSrcGetNumSeqsStats(), BlastSeqSrcGetSeqLen(), BlastSeqSrcGetSequence(), BlastSeqSrcGetSupportsPartialFetching(), BlastSeqSrcGetTotLen(), BlastSeqSrcGetTotLenStats(), BlastSeqSrcIteratorNext(), BlastSeqSrcReleaseSequence(), BlastSeqSrcResetChunkIterator(), BlastSeqSrcSetNumberOfThreads(), and BlastSeqSrcSetSeqRanges().
◆ DeleteFnPtr
| BlastSeqSrcDestructor BlastSeqSrc::DeleteFnPtr |
◆ GetAvgSeqLen
| GetInt4FnPtr BlastSeqSrc::GetAvgSeqLen |
Get average length of sequences in the set.
Definition at line 57 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetAvgSeqLen().
◆ GetIsProt
| GetBoolFnPtr BlastSeqSrc::GetIsProt |
Find if database is a protein or nucleotide.
Definition at line 62 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetIsProt().
◆ GetMaxSeqLen
| GetInt4FnPtr BlastSeqSrc::GetMaxSeqLen |
Get length of longest seq in set.
Definition at line 55 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetMaxSeqLen().
◆ GetMinSeqLen
| GetInt4FnPtr BlastSeqSrc::GetMinSeqLen |
Get length of longest seq in set.
Definition at line 56 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetMinSeqLen().
◆ GetName
| GetStrFnPtr BlastSeqSrc::GetName |
Get the name of the database.
Definition at line 61 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetName().
◆ GetNumSeqs
| GetInt4FnPtr BlastSeqSrc::GetNumSeqs |
Get number of sequences in set.
Definition at line 53 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetNumSeqs().
◆ GetNumSeqsStats
| GetInt4FnPtr BlastSeqSrc::GetNumSeqsStats |
Number of sequences for statistical purposes.
Definition at line 54 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetNumSeqsStats().
◆ GetSeqLen
| GetInt4FnPtr BlastSeqSrc::GetSeqLen |
Retrieve given sequence length.
Definition at line 71 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetSeqLen().
◆ GetSequence
| GetSeqBlkFnPtr BlastSeqSrc::GetSequence |
Retrieve individual sequence.
Definition at line 70 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetSequence().
◆ GetSupportsPartialFetching
| GetBoolFnPtr BlastSeqSrc::GetSupportsPartialFetching |
Find if database supports partial fetching.
Definition at line 66 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetSupportsPartialFetching().
◆ GetTotLen
| GetInt8FnPtr BlastSeqSrc::GetTotLen |
Get tot length of all seqs in set.
Definition at line 59 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetTotLen().
◆ GetTotLenStats
| GetInt8FnPtr BlastSeqSrc::GetTotLenStats |
Total length of all seqs for statistical purposes.
Definition at line 60 of file blast_seqsrc.c.
Referenced by BlastSeqSrcGetTotLenStats().
◆ InitErrorStr
| char* BlastSeqSrc::InitErrorStr |
initialization error string
Definition at line 84 of file blast_seqsrc.c.
Referenced by BlastSeqSrcFree(), and BlastSeqSrcGetInitError().
◆ IterNext
| AdvanceIteratorFnPtr BlastSeqSrc::IterNext |
Gets next oid from the iterator.
Definition at line 76 of file blast_seqsrc.c.
Referenced by BlastSeqSrcIteratorNext().
◆ NewFnPtr
| BlastSeqSrcConstructor BlastSeqSrc::NewFnPtr |
◆ ReleaseSequence
| ReleaseSeqBlkFnPtr BlastSeqSrc::ReleaseSequence |
Deallocate individual sequence (if applicable)
Definition at line 72 of file blast_seqsrc.c.
Referenced by BlastSeqSrcReleaseSequence().
◆ ResetChunkIterator
| ResetChunkIteratorFnPtr BlastSeqSrc::ResetChunkIterator |
Reset the implementation's chunk "bookmark".
Definition at line 78 of file blast_seqsrc.c.
Referenced by BlastSeqSrcResetChunkIterator().
◆ SetNumberOfThreads
| SetInt4FnPtr BlastSeqSrc::SetNumberOfThreads |
Set number of threads.
Definition at line 50 of file blast_seqsrc.c.
Referenced by BlastSeqSrcSetNumberOfThreads().
◆ SetSeqRange
| SetSeqRangeFnPtr BlastSeqSrc::SetSeqRange |
Setting ranges for partial fetching.
Definition at line 67 of file blast_seqsrc.c.
Referenced by BlastSeqSrcSetSeqRanges().
The documentation for this struct was generated from the following file:
- src/algo/blast/core/blast_seqsrc.c
