#include <objects/seqfeat/RNA_gen.hpp>

Inheritance diagram for CRNA_gen:

Collaboration diagram for CRNA_gen:

Public Member Functions
	CRNA_gen (void)

	~CRNA_gen (void)

bool	IsLegalClass () const

Public Member Functions inherited from CRNA_gen_Base
	CRNA_gen_Base (void)

virtual	~CRNA_gen_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetClass (void) const
	for ncRNAs, the class of non-coding RNA: examples: antisense_RNA, guide_RNA, snRNA Check if a value has been assigned to Class data member. More...

bool	CanGetClass (void) const
	Check if it is safe to call GetClass method. More...

void	ResetClass (void)
	Reset Class data member. More...

const TClass &	GetClass (void) const
	Get the Class member data. More...

void	SetClass (const TClass &value)
	Assign a value to Class data member. More...

void	SetClass (TClass &&value)

TClass &	SetClass (void)
	Assign a value to Class data member. More...

bool	IsSetProduct (void) const
	Check if a value has been assigned to Product data member. More...

bool	CanGetProduct (void) const
	Check if it is safe to call GetProduct method. More...

void	ResetProduct (void)
	Reset Product data member. More...

const TProduct &	GetProduct (void) const
	Get the Product member data. More...

void	SetProduct (const TProduct &value)
	Assign a value to Product data member. More...

void	SetProduct (TProduct &&value)

TProduct &	SetProduct (void)
	Assign a value to Product data member. More...

bool	IsSetQuals (void) const
	e.g., tag_peptide qualifier for tmRNAs Check if a value has been assigned to Quals data member. More...

bool	CanGetQuals (void) const
	Check if it is safe to call GetQuals method. More...

void	ResetQuals (void)
	Reset Quals data member. More...

const TQuals &	GetQuals (void) const
	Get the Quals member data. More...

void	SetQuals (TQuals &value)
	Assign a value to Quals data member. More...

TQuals &	SetQuals (void)
	Assign a value to Quals data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static bool	IsLegalClass (const string &val)

static vector< string >	GetncRNAClassList ()

static bool	FixncRNAClassValue (string &val)

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CRNA_gen_Base	Tparent

Private Member Functions
	CRNA_gen (const CRNA_gen &value)

CRNA_gen &	operator= (const CRNA_gen &value)

Additional Inherited Members
Public Types inherited from CRNA_gen_Base
enum class	E_memberIndex { e__allMandatory = 0 , e_class , e_product , e_quals }

typedef string	TClass

typedef string	TProduct

typedef CRNA_qual_set	TQuals

typedef Tparent::CMemberIndex< E_memberIndex, 4 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 53 of file RNA_gen.hpp.

Member Typedef Documentation

◆ Tparent

typedef CRNA_gen_Base CRNA_gen::Tparent

private

Definition at line 55 of file RNA_gen.hpp.

Constructor & Destructor Documentation

◆ CRNA_gen() [1/2]

CRNA_gen::CRNA_gen ( void )

inline

Definition at line 78 of file RNA_gen.hpp.

◆ ~CRNA_gen()

CRNA_gen::~CRNA_gen ( void )

Definition at line 51 of file RNA_gen.cpp.

◆ CRNA_gen() [2/2]

CRNA_gen::CRNA_gen ( const CRNA_gen & value )

private

Member Function Documentation

◆ FixncRNAClassValue()

bool CRNA_gen::FixncRNAClassValue ( string & val )

static

Definition at line 106 of file RNA_gen.cpp.

References val.

Referenced by CNewCleanup_imp::RnarefGenBC(), and s_StartsWithNcrnaName().

◆ GetncRNAClassList()

vector< string > CRNA_gen::GetncRNAClassList ( )

static

Definition at line 86 of file RNA_gen.cpp.

Referenced by BOOST_AUTO_TEST_CASE(), CBulkRNAAddPanel::CreateControls(), CAlignRNAAddPanel::CreateControls(), CncRNASubPanel::CreateControls(), CMacroEditorContext::GetncRNAClassTypes(), and CConvertFeatureBase::x_AddRnaDestinationConversionOptions().

◆ IsLegalClass() [1/2]

bool CRNA_gen::IsLegalClass ( ) const

Definition at line 119 of file RNA_gen.cpp.

References CRNA_gen_Base::GetClass(), and CRNA_gen_Base::IsSetClass().

Referenced by BOOST_AUTO_TEST_CASE(), and s_StartsWithNcrnaName().

◆ IsLegalClass() [2/2]

bool CRNA_gen::IsLegalClass ( const string & val )

static

Definition at line 99 of file RNA_gen.cpp.

References val.

◆ operator=()

CRNA_gen& CRNA_gen::operator= ( const CRNA_gen & value )

private

The documentation for this class was generated from the following files:

include/objects/seqfeat/RNA_gen.hpp
src/objects/seqfeat/RNA_gen.cpp

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Tparent

Constructor & Destructor Documentation

◆ CRNA_gen() [1/2]

◆ ~CRNA_gen()

◆ CRNA_gen() [2/2]

Member Function Documentation

◆ FixncRNAClassValue()

◆ GetncRNAClassList()

◆ IsLegalClass() [1/2]

◆ IsLegalClass() [2/2]

◆ operator=()