Search Toolkit Book for CVariationMethod

#include <objects/variation/VariationMethod.hpp>

Inheritance diagram for CVariationMethod:

Collaboration diagram for CVariationMethod:

Public Member Functions
	CVariationMethod (void)

	~CVariationMethod (void)

Public Member Functions inherited from CVariationMethod_Base
	CVariationMethod_Base (void)

virtual	~CVariationMethod_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetMethod (void) const
	Check if a value has been assigned to Method data member. More...

bool	CanGetMethod (void) const
	Check if it is safe to call GetMethod method. More...

void	ResetMethod (void)
	Reset Method data member. More...

const TMethod &	GetMethod (void) const
	Get the Method member data. More...

TMethod &	SetMethod (void)
	Assign a value to Method data member. More...

bool	IsSetReference_location (void) const
	if sequence-based validation methods are used, what reference sequence location validated the presence of this? Check if a value has been assigned to Reference_location data member. More...

bool	CanGetReference_location (void) const
	Check if it is safe to call GetReference_location method. More...

void	ResetReference_location (void)
	Reset Reference_location data member. More...

const TReference_location &	GetReference_location (void) const
	Get the Reference_location member data. More...

void	SetReference_location (TReference_location &value)
	Assign a value to Reference_location data member. More...

TReference_location &	SetReference_location (void)
	Assign a value to Reference_location data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Private Types
typedef CVariationMethod_Base	Tparent

Private Member Functions
	CVariationMethod (const CVariationMethod &value)

CVariationMethod &	operator= (const CVariationMethod &value)

Additional Inherited Members
Public Types inherited from CVariationMethod_Base
enum	EMethod_E { eMethod_E_unknown = 0 , eMethod_E_bac_acgh = 1 , eMethod_E_computational = 2 , eMethod_E_curated = 3 , eMethod_E_digital_array = 4 , eMethod_E_expression_array = 5 , eMethod_E_fish = 6 , eMethod_E_flanking_sequence = 7 , eMethod_E_maph = 8 , eMethod_E_mcd_analysis = 9 , eMethod_E_mlpa = 10 , eMethod_E_oea_assembly = 11 , eMethod_E_oligo_acgh = 12 , eMethod_E_paired_end = 13 , eMethod_E_pcr = 14 , eMethod_E_qpcr = 15 , eMethod_E_read_depth = 16 , eMethod_E_roma = 17 , eMethod_E_rt_pcr = 18 , eMethod_E_sage = 19 , eMethod_E_sequence_alignment = 20 , eMethod_E_sequencing = 21 , eMethod_E_snp_array = 22 , eMethod_E_snp_genoytyping = 23 , eMethod_E_southern = 24 , eMethod_E_western = 25 , eMethod_E_optical_mapping = 26 , eMethod_E_other = 255 }

enum class	E_memberIndex { e__allMandatory = 0 , e_method , e_reference_location }

typedef list< int >	TMethod

typedef CSeq_loc	TReference_location

typedef Tparent::CMemberIndex< E_memberIndex, 3 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CVariationMethod_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EMethod_E (void)
	Access to EMethod_E's attributes (values, names) as defined in spec. More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CVariationMethod –.

Definition at line 65 of file VariationMethod.hpp.

The documentation for this class was generated from the following files:

include/objects/variation/VariationMethod.hpp
src/objects/variation/VariationMethod.cpp

Public Member Functions

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description