#include <objects/seqloc/PDB_seq_id.hpp>

Inheritance diagram for CPDB_seq_id:

Collaboration diagram for CPDB_seq_id:

Public Types
enum	EBothUnsetPriority { eBothUnset_Chain , eBothUnset_ChainId }

enum	EConflictMode { eConflictMode_default , eConflictMode_legacy }

Public Types inherited from CPDB_seq_id_Base
enum class	E_memberIndex { e__allMandatory = 0 , e_mol , e_chain , e_rel , e_chain_id }

typedef CPDB_mol_id	TMol

typedef int	TChain

typedef CDate	TRel

typedef string	TChain_id

typedef Tparent::CMemberIndex< E_memberIndex, 5 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CPDB_seq_id (void)

	~CPDB_seq_id (void)

bool	Match (const CPDB_seq_id &psip2) const

int	Compare (const CPDB_seq_id &psip2) const

ostream &	AsFastaString (ostream &s) const

void	ResetChainIdentifiers (void)

void	SetChainIdentifiers (TChain chainIdentifier)

void	SetChainIdentifiers (const TChain_id &chainIdentifier)

string	GetEffectiveChain_id (EBothUnsetPriority bothUnsetPriority=eBothUnset_ChainId) const

bool	IsChainConflict (EConflictMode encodingMode=eConflictMode_default) const

Public Member Functions inherited from CPDB_seq_id_Base
	CPDB_seq_id_Base (void)

virtual	~CPDB_seq_id_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetMol (void) const
	the molecule name Check if a value has been assigned to Mol data member. More...

bool	CanGetMol (void) const
	Check if it is safe to call GetMol method. More...

void	ResetMol (void)
	Reset Mol data member. More...

const TMol &	GetMol (void) const
	Get the Mol member data. More...

void	SetMol (const TMol &value)
	Assign a value to Mol data member. More...

TMol &	SetMol (void)
	Assign a value to Mol data member. More...

bool	IsSetChain (void) const
	Deprecated: 'chain' can't support multiple character PDB chain identifiers (introduced in 2015). More...

bool	CanGetChain (void) const
	Check if it is safe to call GetChain method. More...

void	ResetChain (void)
	Reset Chain data member. More...

void	SetDefaultChain (void)
	Assign default value to Chain data member. More...

TChain	GetChain (void) const
	Get the Chain member data. More...

void	SetChain (TChain value)
	Assign a value to Chain data member. More...

TChain &	SetChain (void)
	Assign a value to Chain data member. More...

bool	IsSetRel (void) const
	release date, month and year Check if a value has been assigned to Rel data member. More...

bool	CanGetRel (void) const
	Check if it is safe to call GetRel method. More...

void	ResetRel (void)
	Reset Rel data member. More...

const TRel &	GetRel (void) const
	Get the Rel member data. More...

void	SetRel (TRel &value)
	Assign a value to Rel data member. More...

TRel &	SetRel (void)
	Assign a value to Rel data member. More...

bool	IsSetChain_id (void) const
	chain identifier; length-independent generalization of 'chain' Check if a value has been assigned to Chain_id data member. More...

bool	CanGetChain_id (void) const
	Check if it is safe to call GetChain_id method. More...

void	ResetChain_id (void)
	Reset Chain_id data member. More...

const TChain_id &	GetChain_id (void) const
	Get the Chain_id member data. More...

void	SetChain_id (const TChain_id &value)
	Assign a value to Chain_id data member. More...

void	SetChain_id (TChain_id &&value)

TChain_id &	SetChain_id (void)
	Assign a value to Chain_id data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Private Types
typedef CPDB_seq_id_Base	Tparent

Private Member Functions
	CPDB_seq_id (const CPDB_seq_id &)

CPDB_seq_id &	operator= (const CPDB_seq_id &)

Additional Inherited Members
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...