Search Toolkit Book for CMSChargeHandle
#include <objects/omssa/MSChargeHandle.hpp>
Inheritance diagram for CMSChargeHandle:
Collaboration diagram for CMSChargeHandle:
Public Member Functions | |
| CMSChargeHandle (void) | |
| ~CMSChargeHandle (void) | |
| Public Member Functions inherited from CMSChargeHandle_Base | |
| CMSChargeHandle_Base (void) | |
| virtual | ~CMSChargeHandle_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetCalcplusone (void) const |
| do we guess charge one? Check if a value has been assigned to Calcplusone data member. More... | |
| bool | CanGetCalcplusone (void) const |
| Check if it is safe to call GetCalcplusone method. More... | |
| void | ResetCalcplusone (void) |
| Reset Calcplusone data member. More... | |
| void | SetDefaultCalcplusone (void) |
| Assign default value to Calcplusone data member. More... | |
| TCalcplusone | GetCalcplusone (void) const |
| Get the Calcplusone member data. More... | |
| void | SetCalcplusone (TCalcplusone value) |
| Assign a value to Calcplusone data member. More... | |
| TCalcplusone & | SetCalcplusone (void) |
| Assign a value to Calcplusone data member. More... | |
| bool | IsSetCalccharge (void) const |
| how do we handle charges? Check if a value has been assigned to Calccharge data member. More... | |
| bool | CanGetCalccharge (void) const |
| Check if it is safe to call GetCalccharge method. More... | |
| void | ResetCalccharge (void) |
| Reset Calccharge data member. More... | |
| void | SetDefaultCalccharge (void) |
| Assign default value to Calccharge data member. More... | |
| TCalccharge | GetCalccharge (void) const |
| Get the Calccharge member data. More... | |
| void | SetCalccharge (TCalccharge value) |
| Assign a value to Calccharge data member. More... | |
| TCalccharge & | SetCalccharge (void) |
| Assign a value to Calccharge data member. More... | |
| bool | IsSetMincharge (void) const |
| if userange, what is the min? Check if a value has been assigned to Mincharge data member. More... | |
| bool | CanGetMincharge (void) const |
| Check if it is safe to call GetMincharge method. More... | |
| void | ResetMincharge (void) |
| Reset Mincharge data member. More... | |
| void | SetDefaultMincharge (void) |
| Assign default value to Mincharge data member. More... | |
| TMincharge | GetMincharge (void) const |
| Get the Mincharge member data. More... | |
| void | SetMincharge (TMincharge value) |
| Assign a value to Mincharge data member. More... | |
| TMincharge & | SetMincharge (void) |
| Assign a value to Mincharge data member. More... | |
| bool | IsSetMaxcharge (void) const |
| if userange, what is the max? Check if a value has been assigned to Maxcharge data member. More... | |
| bool | CanGetMaxcharge (void) const |
| Check if it is safe to call GetMaxcharge method. More... | |
| void | ResetMaxcharge (void) |
| Reset Maxcharge data member. More... | |
| void | SetDefaultMaxcharge (void) |
| Assign default value to Maxcharge data member. More... | |
| TMaxcharge | GetMaxcharge (void) const |
| Get the Maxcharge member data. More... | |
| void | SetMaxcharge (TMaxcharge value) |
| Assign a value to Maxcharge data member. More... | |
| TMaxcharge & | SetMaxcharge (void) |
| Assign a value to Maxcharge data member. More... | |
| bool | IsSetConsidermult (void) const |
| at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member. More... | |
| bool | CanGetConsidermult (void) const |
| Check if it is safe to call GetConsidermult method. More... | |
| void | ResetConsidermult (void) |
| Reset Considermult data member. More... | |
| void | SetDefaultConsidermult (void) |
| Assign default value to Considermult data member. More... | |
| TConsidermult | GetConsidermult (void) const |
| Get the Considermult member data. More... | |
| void | SetConsidermult (TConsidermult value) |
| Assign a value to Considermult data member. More... | |
| TConsidermult & | SetConsidermult (void) |
| Assign a value to Considermult data member. More... | |
| bool | IsSetPlusone (void) const |
| what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member. More... | |
| bool | CanGetPlusone (void) const |
| Check if it is safe to call GetPlusone method. More... | |
| void | ResetPlusone (void) |
| Reset Plusone data member. More... | |
| TPlusone | GetPlusone (void) const |
| Get the Plusone member data. More... | |
| void | SetPlusone (TPlusone value) |
| Assign a value to Plusone data member. More... | |
| TPlusone & | SetPlusone (void) |
| Assign a value to Plusone data member. More... | |
| bool | IsSetMaxproductcharge (void) const |
| maximum product ion charge Check if a value has been assigned to Maxproductcharge data member. More... | |
| bool | CanGetMaxproductcharge (void) const |
| Check if it is safe to call GetMaxproductcharge method. More... | |
| void | ResetMaxproductcharge (void) |
| Reset Maxproductcharge data member. More... | |
| TMaxproductcharge | GetMaxproductcharge (void) const |
| Get the Maxproductcharge member data. More... | |
| void | SetMaxproductcharge (TMaxproductcharge value) |
| Assign a value to Maxproductcharge data member. More... | |
| TMaxproductcharge & | SetMaxproductcharge (void) |
| Assign a value to Maxproductcharge data member. More... | |
| bool | IsSetProdlesspre (void) const |
| product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member. More... | |
| bool | CanGetProdlesspre (void) const |
| Check if it is safe to call GetProdlesspre method. More... | |
| void | ResetProdlesspre (void) |
| Reset Prodlesspre data member. More... | |
| TProdlesspre | GetProdlesspre (void) const |
| Get the Prodlesspre member data. More... | |
| void | SetProdlesspre (TProdlesspre value) |
| Assign a value to Prodlesspre data member. More... | |
| TProdlesspre & | SetProdlesspre (void) |
| Assign a value to Prodlesspre data member. More... | |
| bool | IsSetNegative (void) const |
| negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member. More... | |
| bool | CanGetNegative (void) const |
| Check if it is safe to call GetNegative method. More... | |
| void | ResetNegative (void) |
| Reset Negative data member. More... | |
| void | SetDefaultNegative (void) |
| Assign default value to Negative data member. More... | |
| TNegative | GetNegative (void) const |
| Get the Negative member data. More... | |
| void | SetNegative (TNegative value) |
| Assign a value to Negative data member. More... | |
| TNegative & | SetNegative (void) |
| Assign a value to Negative data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CMSChargeHandle_Base | Tparent |
Private Member Functions | |
| CMSChargeHandle (const CMSChargeHandle &value) | |
| CMSChargeHandle & | operator= (const CMSChargeHandle &value) |
Additional Inherited Members | |
| Public Types inherited from CMSChargeHandle_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_calcplusone , e_calccharge , e_mincharge , e_maxcharge , e_considermult , e_plusone , e_maxproductcharge , e_prodlesspre , e_negative } |
| typedef int | TCalcplusone |
| typedef int | TCalccharge |
| typedef int | TMincharge |
| typedef int | TMaxcharge |
| typedef int | TConsidermult |
| typedef double | TPlusone |
| typedef int | TMaxproductcharge |
| typedef bool | TProdlesspre |
| typedef int | TNegative |
| typedef Tparent::CMemberIndex< E_memberIndex, 10 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 65 of file MSChargeHandle.hpp.
The documentation for this class was generated from the following files:
- include/objects/omssa/MSChargeHandle.hpp
- src/objects/omssa/MSChargeHandle.cpp
