CHsp Class Reference

Search Toolkit Book for CHsp

CHsp –. More...

#include <objects/blastxml/Hsp.hpp>

Inheritance diagram for CHsp:

Collaboration diagram for CHsp:

Public Member Functions
	CHsp (void)
	~CHsp (void)
	CHsp (void)
	~CHsp (void)
Public Member Functions inherited from CHsp_Base
	CHsp_Base (void)
virtual	~CHsp_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetNum (void) const
	HSP number Check if a value has been assigned to Num data member. More...
bool	CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	ResetNum (void)
	Reset Num data member. More...
TNum	GetNum (void) const
	Get the Num member data. More...
void	SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	SetNum (void)
	Assign a value to Num data member. More...
bool	IsSetBit_score (void) const
	score (in bits) of HSP Check if a value has been assigned to Bit_score data member. More...
bool	CanGetBit_score (void) const
	Check if it is safe to call GetBit_score method. More...
void	ResetBit_score (void)
	Reset Bit_score data member. More...
TBit_score	GetBit_score (void) const
	Get the Bit_score member data. More...
void	SetBit_score (TBit_score value)
	Assign a value to Bit_score data member. More...
TBit_score &	SetBit_score (void)
	Assign a value to Bit_score data member. More...
bool	IsSetScore (void) const
	score of HSP Check if a value has been assigned to Score data member. More...
bool	CanGetScore (void) const
	Check if it is safe to call GetScore method. More...
void	ResetScore (void)
	Reset Score data member. More...
TScore	GetScore (void) const
	Get the Score member data. More...
void	SetScore (TScore value)
	Assign a value to Score data member. More...
TScore &	SetScore (void)
	Assign a value to Score data member. More...
bool	IsSetEvalue (void) const
	e-value of HSP Check if a value has been assigned to Evalue data member. More...
bool	CanGetEvalue (void) const
	Check if it is safe to call GetEvalue method. More...
void	ResetEvalue (void)
	Reset Evalue data member. More...
TEvalue	GetEvalue (void) const
	Get the Evalue member data. More...
void	SetEvalue (TEvalue value)
	Assign a value to Evalue data member. More...
TEvalue &	SetEvalue (void)
	Assign a value to Evalue data member. More...
bool	IsSetQuery_from (void) const
	start of HSP in query Check if a value has been assigned to Query_from data member. More...
bool	CanGetQuery_from (void) const
	Check if it is safe to call GetQuery_from method. More...
void	ResetQuery_from (void)
	Reset Query_from data member. More...
TQuery_from	GetQuery_from (void) const
	Get the Query_from member data. More...
void	SetQuery_from (TQuery_from value)
	Assign a value to Query_from data member. More...
TQuery_from &	SetQuery_from (void)
	Assign a value to Query_from data member. More...
bool	IsSetQuery_to (void) const
	end of HSP Check if a value has been assigned to Query_to data member. More...
bool	CanGetQuery_to (void) const
	Check if it is safe to call GetQuery_to method. More...
void	ResetQuery_to (void)
	Reset Query_to data member. More...
TQuery_to	GetQuery_to (void) const
	Get the Query_to member data. More...
void	SetQuery_to (TQuery_to value)
	Assign a value to Query_to data member. More...
TQuery_to &	SetQuery_to (void)
	Assign a value to Query_to data member. More...
bool	IsSetHit_from (void) const
	start of HSP in subject Check if a value has been assigned to Hit_from data member. More...
bool	CanGetHit_from (void) const
	Check if it is safe to call GetHit_from method. More...
void	ResetHit_from (void)
	Reset Hit_from data member. More...
THit_from	GetHit_from (void) const
	Get the Hit_from member data. More...
void	SetHit_from (THit_from value)
	Assign a value to Hit_from data member. More...
THit_from &	SetHit_from (void)
	Assign a value to Hit_from data member. More...
bool	IsSetHit_to (void) const
	end of HSP in subject Check if a value has been assigned to Hit_to data member. More...
bool	CanGetHit_to (void) const
	Check if it is safe to call GetHit_to method. More...
void	ResetHit_to (void)
	Reset Hit_to data member. More...
THit_to	GetHit_to (void) const
	Get the Hit_to member data. More...
void	SetHit_to (THit_to value)
	Assign a value to Hit_to data member. More...
THit_to &	SetHit_to (void)
	Assign a value to Hit_to data member. More...
bool	IsSetPattern_from (void) const
	start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member. More...
bool	CanGetPattern_from (void) const
	Check if it is safe to call GetPattern_from method. More...
void	ResetPattern_from (void)
	Reset Pattern_from data member. More...
TPattern_from	GetPattern_from (void) const
	Get the Pattern_from member data. More...
void	SetPattern_from (TPattern_from value)
	Assign a value to Pattern_from data member. More...
TPattern_from &	SetPattern_from (void)
	Assign a value to Pattern_from data member. More...
bool	IsSetPattern_to (void) const
	end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member. More...
bool	CanGetPattern_to (void) const
	Check if it is safe to call GetPattern_to method. More...
void	ResetPattern_to (void)
	Reset Pattern_to data member. More...
TPattern_to	GetPattern_to (void) const
	Get the Pattern_to member data. More...
void	SetPattern_to (TPattern_to value)
	Assign a value to Pattern_to data member. More...
TPattern_to &	SetPattern_to (void)
	Assign a value to Pattern_to data member. More...
bool	IsSetQuery_frame (void) const
	translation frame of query Check if a value has been assigned to Query_frame data member. More...
bool	CanGetQuery_frame (void) const
	Check if it is safe to call GetQuery_frame method. More...
void	ResetQuery_frame (void)
	Reset Query_frame data member. More...
TQuery_frame	GetQuery_frame (void) const
	Get the Query_frame member data. More...
void	SetQuery_frame (TQuery_frame value)
	Assign a value to Query_frame data member. More...
TQuery_frame &	SetQuery_frame (void)
	Assign a value to Query_frame data member. More...
bool	IsSetHit_frame (void) const
	translation frame of subject Check if a value has been assigned to Hit_frame data member. More...
bool	CanGetHit_frame (void) const
	Check if it is safe to call GetHit_frame method. More...
void	ResetHit_frame (void)
	Reset Hit_frame data member. More...
THit_frame	GetHit_frame (void) const
	Get the Hit_frame member data. More...
void	SetHit_frame (THit_frame value)
	Assign a value to Hit_frame data member. More...
THit_frame &	SetHit_frame (void)
	Assign a value to Hit_frame data member. More...
bool	IsSetIdentity (void) const
	number of identities in HSP Check if a value has been assigned to Identity data member. More...
bool	CanGetIdentity (void) const
	Check if it is safe to call GetIdentity method. More...
void	ResetIdentity (void)
	Reset Identity data member. More...
TIdentity	GetIdentity (void) const
	Get the Identity member data. More...
void	SetIdentity (TIdentity value)
	Assign a value to Identity data member. More...
TIdentity &	SetIdentity (void)
	Assign a value to Identity data member. More...
bool	IsSetPositive (void) const
	number of positives in HSP Check if a value has been assigned to Positive data member. More...
bool	CanGetPositive (void) const
	Check if it is safe to call GetPositive method. More...
void	ResetPositive (void)
	Reset Positive data member. More...
TPositive	GetPositive (void) const
	Get the Positive member data. More...
void	SetPositive (TPositive value)
	Assign a value to Positive data member. More...
TPositive &	SetPositive (void)
	Assign a value to Positive data member. More...
bool	IsSetGaps (void) const
	number of gaps in HSP Check if a value has been assigned to Gaps data member. More...
bool	CanGetGaps (void) const
	Check if it is safe to call GetGaps method. More...
void	ResetGaps (void)
	Reset Gaps data member. More...
TGaps	GetGaps (void) const
	Get the Gaps member data. More...
void	SetGaps (TGaps value)
	Assign a value to Gaps data member. More...
TGaps &	SetGaps (void)
	Assign a value to Gaps data member. More...
bool	IsSetAlign_len (void) const
	length of the alignment used Check if a value has been assigned to Align_len data member. More...
bool	CanGetAlign_len (void) const
	Check if it is safe to call GetAlign_len method. More...
void	ResetAlign_len (void)
	Reset Align_len data member. More...
TAlign_len	GetAlign_len (void) const
	Get the Align_len member data. More...
void	SetAlign_len (TAlign_len value)
	Assign a value to Align_len data member. More...
TAlign_len &	SetAlign_len (void)
	Assign a value to Align_len data member. More...
bool	IsSetDensity (void) const
	score density Check if a value has been assigned to Density data member. More...
bool	CanGetDensity (void) const
	Check if it is safe to call GetDensity method. More...
void	ResetDensity (void)
	Reset Density data member. More...
TDensity	GetDensity (void) const
	Get the Density member data. More...
void	SetDensity (TDensity value)
	Assign a value to Density data member. More...
TDensity &	SetDensity (void)
	Assign a value to Density data member. More...
bool	IsSetQseq (void) const
	alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member. More...
bool	CanGetQseq (void) const
	Check if it is safe to call GetQseq method. More...
void	ResetQseq (void)
	Reset Qseq data member. More...
const TQseq &	GetQseq (void) const
	Get the Qseq member data. More...
void	SetQseq (const TQseq &value)
	Assign a value to Qseq data member. More...
void	SetQseq (TQseq &&value)
TQseq &	SetQseq (void)
	Assign a value to Qseq data member. More...
bool	IsSetHseq (void) const
	alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member. More...
bool	CanGetHseq (void) const
	Check if it is safe to call GetHseq method. More...
void	ResetHseq (void)
	Reset Hseq data member. More...
const THseq &	GetHseq (void) const
	Get the Hseq member data. More...
void	SetHseq (const THseq &value)
	Assign a value to Hseq data member. More...
void	SetHseq (THseq &&value)
THseq &	SetHseq (void)
	Assign a value to Hseq data member. More...
bool	IsSetMidline (void) const
	formating middle line Check if a value has been assigned to Midline data member. More...
bool	CanGetMidline (void) const
	Check if it is safe to call GetMidline method. More...
void	ResetMidline (void)
	Reset Midline data member. More...
const TMidline &	GetMidline (void) const
	Get the Midline member data. More...
void	SetMidline (const TMidline &value)
	Assign a value to Midline data member. More...
void	SetMidline (TMidline &&value)
TMidline &	SetMidline (void)
	Assign a value to Midline data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
	CHsp_Base (void)
virtual	~CHsp_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetNum (void) const
	HSP number Check if a value has been assigned to Num data member. More...
bool	CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	ResetNum (void)
	Reset Num data member. More...
TNum	GetNum (void) const
	Get the Num member data. More...
void	SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	SetNum (void)
	Assign a value to Num data member. More...
bool	IsSetBit_score (void) const
	score (in bits) of HSP Check if a value has been assigned to Bit_score data member. More...
bool	CanGetBit_score (void) const
	Check if it is safe to call GetBit_score method. More...
void	ResetBit_score (void)
	Reset Bit_score data member. More...
TBit_score	GetBit_score (void) const
	Get the Bit_score member data. More...
void	SetBit_score (TBit_score value)
	Assign a value to Bit_score data member. More...
TBit_score &	SetBit_score (void)
	Assign a value to Bit_score data member. More...
bool	IsSetScore (void) const
	score of HSP Check if a value has been assigned to Score data member. More...
bool	CanGetScore (void) const
	Check if it is safe to call GetScore method. More...
void	ResetScore (void)
	Reset Score data member. More...
TScore	GetScore (void) const
	Get the Score member data. More...
void	SetScore (TScore value)
	Assign a value to Score data member. More...
TScore &	SetScore (void)
	Assign a value to Score data member. More...
bool	IsSetEvalue (void) const
	e-value of HSP Check if a value has been assigned to Evalue data member. More...
bool	CanGetEvalue (void) const
	Check if it is safe to call GetEvalue method. More...
void	ResetEvalue (void)
	Reset Evalue data member. More...
TEvalue	GetEvalue (void) const
	Get the Evalue member data. More...
void	SetEvalue (TEvalue value)
	Assign a value to Evalue data member. More...
TEvalue &	SetEvalue (void)
	Assign a value to Evalue data member. More...
bool	IsSetIdentity (void) const
	number of identities in HSP Check if a value has been assigned to Identity data member. More...
bool	CanGetIdentity (void) const
	Check if it is safe to call GetIdentity method. More...
void	ResetIdentity (void)
	Reset Identity data member. More...
TIdentity	GetIdentity (void) const
	Get the Identity member data. More...
void	SetIdentity (TIdentity value)
	Assign a value to Identity data member. More...
TIdentity &	SetIdentity (void)
	Assign a value to Identity data member. More...
bool	IsSetPositive (void) const
	number of positives in HSP Check if a value has been assigned to Positive data member. More...
bool	CanGetPositive (void) const
	Check if it is safe to call GetPositive method. More...
void	ResetPositive (void)
	Reset Positive data member. More...
TPositive	GetPositive (void) const
	Get the Positive member data. More...
void	SetPositive (TPositive value)
	Assign a value to Positive data member. More...
TPositive &	SetPositive (void)
	Assign a value to Positive data member. More...
bool	IsSetDensity (void) const
	score density Check if a value has been assigned to Density data member. More...
bool	CanGetDensity (void) const
	Check if it is safe to call GetDensity method. More...
void	ResetDensity (void)
	Reset Density data member. More...
TDensity	GetDensity (void) const
	Get the Density member data. More...
void	SetDensity (TDensity value)
	Assign a value to Density data member. More...
TDensity &	SetDensity (void)
	Assign a value to Density data member. More...
bool	IsSetPattern_from (void) const
	start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member. More...
bool	CanGetPattern_from (void) const
	Check if it is safe to call GetPattern_from method. More...
void	ResetPattern_from (void)
	Reset Pattern_from data member. More...
TPattern_from	GetPattern_from (void) const
	Get the Pattern_from member data. More...
void	SetPattern_from (TPattern_from value)
	Assign a value to Pattern_from data member. More...
TPattern_from &	SetPattern_from (void)
	Assign a value to Pattern_from data member. More...
bool	IsSetPattern_to (void) const
	end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member. More...
bool	CanGetPattern_to (void) const
	Check if it is safe to call GetPattern_to method. More...
void	ResetPattern_to (void)
	Reset Pattern_to data member. More...
TPattern_to	GetPattern_to (void) const
	Get the Pattern_to member data. More...
void	SetPattern_to (TPattern_to value)
	Assign a value to Pattern_to data member. More...
TPattern_to &	SetPattern_to (void)
	Assign a value to Pattern_to data member. More...
bool	IsSetQuery_from (void) const
	start of HSP in query Check if a value has been assigned to Query_from data member. More...
bool	CanGetQuery_from (void) const
	Check if it is safe to call GetQuery_from method. More...
void	ResetQuery_from (void)
	Reset Query_from data member. More...
TQuery_from	GetQuery_from (void) const
	Get the Query_from member data. More...
void	SetQuery_from (TQuery_from value)
	Assign a value to Query_from data member. More...
TQuery_from &	SetQuery_from (void)
	Assign a value to Query_from data member. More...
bool	IsSetQuery_to (void) const
	end of HSP Check if a value has been assigned to Query_to data member. More...
bool	CanGetQuery_to (void) const
	Check if it is safe to call GetQuery_to method. More...
void	ResetQuery_to (void)
	Reset Query_to data member. More...
TQuery_to	GetQuery_to (void) const
	Get the Query_to member data. More...
void	SetQuery_to (TQuery_to value)
	Assign a value to Query_to data member. More...
TQuery_to &	SetQuery_to (void)
	Assign a value to Query_to data member. More...
bool	IsSetQuery_strand (void) const
	Strand of query (blastn) Check if a value has been assigned to Query_strand data member. More...
bool	CanGetQuery_strand (void) const
	Check if it is safe to call GetQuery_strand method. More...
void	ResetQuery_strand (void)
	Reset Query_strand data member. More...
const TQuery_strand &	GetQuery_strand (void) const
	Get the Query_strand member data. More...
void	SetQuery_strand (const TQuery_strand &value)
	Assign a value to Query_strand data member. More...
void	SetQuery_strand (TQuery_strand &&value)
TQuery_strand &	SetQuery_strand (void)
	Assign a value to Query_strand data member. More...
bool	IsSetQuery_frame (void) const
	translation frame of query (blastx, tblastx) Check if a value has been assigned to Query_frame data member. More...
bool	CanGetQuery_frame (void) const
	Check if it is safe to call GetQuery_frame method. More...
void	ResetQuery_frame (void)
	Reset Query_frame data member. More...
TQuery_frame	GetQuery_frame (void) const
	Get the Query_frame member data. More...
void	SetQuery_frame (TQuery_frame value)
	Assign a value to Query_frame data member. More...
TQuery_frame &	SetQuery_frame (void)
	Assign a value to Query_frame data member. More...
bool	IsSetHit_from (void) const
	start of HSP in subject Check if a value has been assigned to Hit_from data member. More...
bool	CanGetHit_from (void) const
	Check if it is safe to call GetHit_from method. More...
void	ResetHit_from (void)
	Reset Hit_from data member. More...
THit_from	GetHit_from (void) const
	Get the Hit_from member data. More...
void	SetHit_from (THit_from value)
	Assign a value to Hit_from data member. More...
THit_from &	SetHit_from (void)
	Assign a value to Hit_from data member. More...
bool	IsSetHit_to (void) const
	end of HSP in subject Check if a value has been assigned to Hit_to data member. More...
bool	CanGetHit_to (void) const
	Check if it is safe to call GetHit_to method. More...
void	ResetHit_to (void)
	Reset Hit_to data member. More...
THit_to	GetHit_to (void) const
	Get the Hit_to member data. More...
void	SetHit_to (THit_to value)
	Assign a value to Hit_to data member. More...
THit_to &	SetHit_to (void)
	Assign a value to Hit_to data member. More...
bool	IsSetHit_strand (void) const
	Strand of subject (blastn) Check if a value has been assigned to Hit_strand data member. More...
bool	CanGetHit_strand (void) const
	Check if it is safe to call GetHit_strand method. More...
void	ResetHit_strand (void)
	Reset Hit_strand data member. More...
const THit_strand &	GetHit_strand (void) const
	Get the Hit_strand member data. More...
void	SetHit_strand (const THit_strand &value)
	Assign a value to Hit_strand data member. More...
void	SetHit_strand (THit_strand &&value)
THit_strand &	SetHit_strand (void)
	Assign a value to Hit_strand data member. More...
bool	IsSetHit_frame (void) const
	translation frame of subject (tblastn, tblastx) Check if a value has been assigned to Hit_frame data member. More...
bool	CanGetHit_frame (void) const
	Check if it is safe to call GetHit_frame method. More...
void	ResetHit_frame (void)
	Reset Hit_frame data member. More...
THit_frame	GetHit_frame (void) const
	Get the Hit_frame member data. More...
void	SetHit_frame (THit_frame value)
	Assign a value to Hit_frame data member. More...
THit_frame &	SetHit_frame (void)
	Assign a value to Hit_frame data member. More...
bool	IsSetAlign_len (void) const
	length of the alignment used Check if a value has been assigned to Align_len data member. More...
bool	CanGetAlign_len (void) const
	Check if it is safe to call GetAlign_len method. More...
void	ResetAlign_len (void)
	Reset Align_len data member. More...
TAlign_len	GetAlign_len (void) const
	Get the Align_len member data. More...
void	SetAlign_len (TAlign_len value)
	Assign a value to Align_len data member. More...
TAlign_len &	SetAlign_len (void)
	Assign a value to Align_len data member. More...
bool	IsSetGaps (void) const
	number of gaps in HSP Check if a value has been assigned to Gaps data member. More...
bool	CanGetGaps (void) const
	Check if it is safe to call GetGaps method. More...
void	ResetGaps (void)
	Reset Gaps data member. More...
TGaps	GetGaps (void) const
	Get the Gaps member data. More...
void	SetGaps (TGaps value)
	Assign a value to Gaps data member. More...
TGaps &	SetGaps (void)
	Assign a value to Gaps data member. More...
bool	IsSetQseq (void) const
	alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member. More...
bool	CanGetQseq (void) const
	Check if it is safe to call GetQseq method. More...
void	ResetQseq (void)
	Reset Qseq data member. More...
const TQseq &	GetQseq (void) const
	Get the Qseq member data. More...
void	SetQseq (const TQseq &value)
	Assign a value to Qseq data member. More...
void	SetQseq (TQseq &&value)
TQseq &	SetQseq (void)
	Assign a value to Qseq data member. More...
bool	IsSetHseq (void) const
	alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member. More...
bool	CanGetHseq (void) const
	Check if it is safe to call GetHseq method. More...
void	ResetHseq (void)
	Reset Hseq data member. More...
const THseq &	GetHseq (void) const
	Get the Hseq member data. More...
void	SetHseq (const THseq &value)
	Assign a value to Hseq data member. More...
void	SetHseq (THseq &&value)
THseq &	SetHseq (void)
	Assign a value to Hseq data member. More...
bool	IsSetMidline (void) const
	formating middle line Check if a value has been assigned to Midline data member. More...
bool	CanGetMidline (void) const
	Check if it is safe to call GetMidline method. More...
void	ResetMidline (void)
	Reset Midline data member. More...
const TMidline &	GetMidline (void) const
	Get the Midline member data. More...
void	SetMidline (const TMidline &value)
	Assign a value to Midline data member. More...
void	SetMidline (TMidline &&value)
TMidline &	SetMidline (void)
	Assign a value to Midline data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Private Types
typedef CHsp_Base	Tparent
typedef CHsp_Base	Tparent

Private Member Functions
	CHsp (const CHsp &value)
CHsp &	operator= (const CHsp &value)
	CHsp (const CHsp &value)
CHsp &	operator= (const CHsp &value)

Additional Inherited Members
Public Types inherited from CHsp_Base
enum class	E_memberIndex {   e__allMandatory = 0 , e_num , e_bit_score , e_score ,   e_evalue , e_query_from , e_query_to , e_hit_from ,   e_hit_to , e_pattern_from , e_pattern_to , e_query_frame ,   e_hit_frame , e_identity , e_positive , e_gaps ,   e_align_len , e_density , e_qseq , e_hseq ,   e_midline , e__allMandatory = 0 , e_num , e_bit_score ,   e_score , e_evalue , e_identity , e_positive ,   e_density , e_pattern_from , e_pattern_to , e_query_from ,   e_query_to , e_query_strand , e_query_frame , e_hit_from ,   e_hit_to , e_hit_strand , e_hit_frame , e_align_len ,   e_gaps , e_qseq , e_hseq , e_midline }
enum class	E_memberIndex {   e__allMandatory = 0 , e_num , e_bit_score , e_score ,   e_evalue , e_query_from , e_query_to , e_hit_from ,   e_hit_to , e_pattern_from , e_pattern_to , e_query_frame ,   e_hit_frame , e_identity , e_positive , e_gaps ,   e_align_len , e_density , e_qseq , e_hseq ,   e_midline , e__allMandatory = 0 , e_num , e_bit_score ,   e_score , e_evalue , e_identity , e_positive ,   e_density , e_pattern_from , e_pattern_to , e_query_from ,   e_query_to , e_query_strand , e_query_frame , e_hit_from ,   e_hit_to , e_hit_strand , e_hit_frame , e_align_len ,   e_gaps , e_qseq , e_hseq , e_midline }
typedef int	TNum
typedef double	TBit_score
typedef double	TScore
typedef double	TEvalue
typedef int	TQuery_from
typedef int	TQuery_to
typedef int	THit_from
typedef int	THit_to
typedef int	TPattern_from
typedef int	TPattern_to
typedef int	TQuery_frame
typedef int	THit_frame
typedef int	TIdentity
typedef int	TPositive
typedef int	TGaps
typedef int	TAlign_len
typedef int	TDensity
typedef string	TQseq
typedef string	THseq
typedef string	TMidline
typedef Tparent::CMemberIndex< E_memberIndex, 21 >	TmemberIndex
typedef int	TNum
typedef double	TBit_score
typedef double	TScore
typedef double	TEvalue
typedef int	TIdentity
typedef int	TPositive
typedef int	TDensity
typedef int	TPattern_from
typedef int	TPattern_to
typedef int	TQuery_from
typedef int	TQuery_to
typedef string	TQuery_strand
typedef int	TQuery_frame
typedef int	THit_from
typedef int	THit_to
typedef string	THit_strand
typedef int	THit_frame
typedef int	TAlign_len
typedef int	TGaps
typedef string	TQseq
typedef string	THseq
typedef string	TMidline
typedef Tparent::CMemberIndex< E_memberIndex, 23 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CHsp –.

Definition at line 65 of file Hsp.hpp.

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The documentation for this class was generated from the following files:

• include/objects/blastxml/Hsp.hpp
• src/objects/blastxml/Hsp.cpp