Search Toolkit Book for CGBAltSeqItem
#include <objects/gbseq/GBAltSeqItem.hpp>
Inheritance diagram for CGBAltSeqItem:
Collaboration diagram for CGBAltSeqItem:
Public Member Functions | |
| CGBAltSeqItem (void) | |
| ~CGBAltSeqItem (void) | |
| Public Member Functions inherited from CGBAltSeqItem_Base | |
| CGBAltSeqItem_Base (void) | |
| virtual | ~CGBAltSeqItem_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetInterval (void) const |
| Check if a value has been assigned to Interval data member. More... | |
| bool | CanGetInterval (void) const |
| Check if it is safe to call GetInterval method. More... | |
| void | ResetInterval (void) |
| Reset Interval data member. More... | |
| const TInterval & | GetInterval (void) const |
| Get the Interval member data. More... | |
| void | SetInterval (TInterval &value) |
| Assign a value to Interval data member. More... | |
| TInterval & | SetInterval (void) |
| Assign a value to Interval data member. More... | |
| bool | IsSetIsgap (void) const |
| Check if a value has been assigned to Isgap data member. More... | |
| bool | CanGetIsgap (void) const |
| Check if it is safe to call GetIsgap method. More... | |
| void | ResetIsgap (void) |
| Reset Isgap data member. More... | |
| TIsgap | GetIsgap (void) const |
| Get the Isgap member data. More... | |
| void | SetIsgap (TIsgap value) |
| Assign a value to Isgap data member. More... | |
| TIsgap & | SetIsgap (void) |
| Assign a value to Isgap data member. More... | |
| bool | IsSetGap_length (void) const |
| Check if a value has been assigned to Gap_length data member. More... | |
| bool | CanGetGap_length (void) const |
| Check if it is safe to call GetGap_length method. More... | |
| void | ResetGap_length (void) |
| Reset Gap_length data member. More... | |
| TGap_length | GetGap_length (void) const |
| Get the Gap_length member data. More... | |
| void | SetGap_length (TGap_length value) |
| Assign a value to Gap_length data member. More... | |
| TGap_length & | SetGap_length (void) |
| Assign a value to Gap_length data member. More... | |
| bool | IsSetGap_type (void) const |
| Check if a value has been assigned to Gap_type data member. More... | |
| bool | CanGetGap_type (void) const |
| Check if it is safe to call GetGap_type method. More... | |
| void | ResetGap_type (void) |
| Reset Gap_type data member. More... | |
| const TGap_type & | GetGap_type (void) const |
| Get the Gap_type member data. More... | |
| void | SetGap_type (const TGap_type &value) |
| Assign a value to Gap_type data member. More... | |
| void | SetGap_type (TGap_type &&value) |
| TGap_type & | SetGap_type (void) |
| Assign a value to Gap_type data member. More... | |
| bool | IsSetGap_linkage (void) const |
| Check if a value has been assigned to Gap_linkage data member. More... | |
| bool | CanGetGap_linkage (void) const |
| Check if it is safe to call GetGap_linkage method. More... | |
| void | ResetGap_linkage (void) |
| Reset Gap_linkage data member. More... | |
| const TGap_linkage & | GetGap_linkage (void) const |
| Get the Gap_linkage member data. More... | |
| void | SetGap_linkage (const TGap_linkage &value) |
| Assign a value to Gap_linkage data member. More... | |
| void | SetGap_linkage (TGap_linkage &&value) |
| TGap_linkage & | SetGap_linkage (void) |
| Assign a value to Gap_linkage data member. More... | |
| bool | IsSetGap_comment (void) const |
| Check if a value has been assigned to Gap_comment data member. More... | |
| bool | CanGetGap_comment (void) const |
| Check if it is safe to call GetGap_comment method. More... | |
| void | ResetGap_comment (void) |
| Reset Gap_comment data member. More... | |
| const TGap_comment & | GetGap_comment (void) const |
| Get the Gap_comment member data. More... | |
| void | SetGap_comment (const TGap_comment &value) |
| Assign a value to Gap_comment data member. More... | |
| void | SetGap_comment (TGap_comment &&value) |
| TGap_comment & | SetGap_comment (void) |
| Assign a value to Gap_comment data member. More... | |
| bool | IsSetFirst_accn (void) const |
| Check if a value has been assigned to First_accn data member. More... | |
| bool | CanGetFirst_accn (void) const |
| Check if it is safe to call GetFirst_accn method. More... | |
| void | ResetFirst_accn (void) |
| Reset First_accn data member. More... | |
| const TFirst_accn & | GetFirst_accn (void) const |
| Get the First_accn member data. More... | |
| void | SetFirst_accn (const TFirst_accn &value) |
| Assign a value to First_accn data member. More... | |
| void | SetFirst_accn (TFirst_accn &&value) |
| TFirst_accn & | SetFirst_accn (void) |
| Assign a value to First_accn data member. More... | |
| bool | IsSetLast_accn (void) const |
| Check if a value has been assigned to Last_accn data member. More... | |
| bool | CanGetLast_accn (void) const |
| Check if it is safe to call GetLast_accn method. More... | |
| void | ResetLast_accn (void) |
| Reset Last_accn data member. More... | |
| const TLast_accn & | GetLast_accn (void) const |
| Get the Last_accn member data. More... | |
| void | SetLast_accn (const TLast_accn &value) |
| Assign a value to Last_accn data member. More... | |
| void | SetLast_accn (TLast_accn &&value) |
| TLast_accn & | SetLast_accn (void) |
| Assign a value to Last_accn data member. More... | |
| bool | IsSetValue (void) const |
| Check if a value has been assigned to Value data member. More... | |
| bool | CanGetValue (void) const |
| Check if it is safe to call GetValue method. More... | |
| void | ResetValue (void) |
| Reset Value data member. More... | |
| const TValue & | GetValue (void) const |
| Get the Value member data. More... | |
| void | SetValue (const TValue &value) |
| Assign a value to Value data member. More... | |
| void | SetValue (TValue &&value) |
| TValue & | SetValue (void) |
| Assign a value to Value data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CGBAltSeqItem_Base | Tparent |
Private Member Functions | |
| CGBAltSeqItem (const CGBAltSeqItem &value) | |
| CGBAltSeqItem & | operator= (const CGBAltSeqItem &value) |
Additional Inherited Members | |
| Public Types inherited from CGBAltSeqItem_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_interval , e_isgap , e_gap_length , e_gap_type , e_gap_linkage , e_gap_comment , e_first_accn , e_last_accn , e_value } |
| typedef CGBInterval | TInterval |
| typedef bool | TIsgap |
| typedef int | TGap_length |
| typedef string | TGap_type |
| typedef string | TGap_linkage |
| typedef string | TGap_comment |
| typedef string | TFirst_accn |
| typedef string | TLast_accn |
| typedef string | TValue |
| typedef Tparent::CMemberIndex< E_memberIndex, 10 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 65 of file GBAltSeqItem.hpp.
The documentation for this class was generated from the following files:
- include/objects/gbseq/GBAltSeqItem.hpp
- src/objects/gbseq/GBAltSeqItem.cpp
