CVariationException Class Reference

Search Toolkit Book for CVariationException

CVariationException –. More...

#include <objects/variation/VariationException.hpp>

Inheritance diagram for CVariationException:

Collaboration diagram for CVariationException:

Public Member Functions
	CVariationException (void)
	~CVariationException (void)
Public Member Functions inherited from CVariationException_Base
	CVariationException_Base (void)
virtual	~CVariationException_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetCode (void) const
	Check if a value has been assigned to Code data member. More...
bool	CanGetCode (void) const
	Check if it is safe to call GetCode method. More...
void	ResetCode (void)
	Reset Code data member. More...
TCode	GetCode (void) const
	Get the Code member data. More...
void	SetCode (TCode value)
	Assign a value to Code data member. More...
TCode &	SetCode (void)
	Assign a value to Code data member. More...
bool	IsSetMessage (void) const
	Check if a value has been assigned to Message data member. More...
bool	CanGetMessage (void) const
	Check if it is safe to call GetMessage method. More...
void	ResetMessage (void)
	Reset Message data member. More...
const TMessage &	GetMessage (void) const
	Get the Message member data. More...
void	SetMessage (const TMessage &value)
	Assign a value to Message data member. More...
void	SetMessage (TMessage &&value)
TMessage &	SetMessage (void)
	Assign a value to Message data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Private Types
typedef CVariationException_Base	Tparent

Private Member Functions
	CVariationException (const CVariationException &value)
CVariationException &	operator= (const CVariationException &value)

Additional Inherited Members
Public Types inherited from CVariationException_Base
enum	ECode {   eCode_hgvs_parsing = 1 , eCode_hgvs_exon_boundary = 2 , eCode_inconsistent_consequence = 3 , eCode_inconsistent_asserted_allele = 4 ,   eCode_no_mapping = 5 , eCode_partial_mapping = 6 , eCode_split_mapping = 7 , eCode_mismatches_in_mapping = 8 ,   eCode_inconsistent_asserted_moltype = 9 , eCode_bioseq_state = 10 , eCode_ambiguous_sequence = 11 , eCode_ref_same_as_variant = 12 ,   eCode_seqfetch_too_long = 13 , eCode_seqfetch_intronic = 14 , eCode_seqfetch_invalid = 15 , eCode_no_mapping_from_newer_version = 16 ,   eCode_source_location_overhang = 17 , eCode_hgvs_exon_boundary_induced = 18 }
enum class	E_memberIndex { e__allMandatory = 0 , e_code , e_message }
typedef int	TCode
typedef string	TMessage
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...
Static Public Member Functions inherited from CVariationException_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ECode (void)
	Access to ECode's attributes (values, names) as defined in spec. More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CVariationException –.

Definition at line 65 of file VariationException.hpp.

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The documentation for this class was generated from the following files:

• include/objects/variation/VariationException.hpp
• src/objects/variation/VariationException.cpp