#include <objects/tinyseq/TSeq.hpp>
Inheritance diagram for CTSeq:
Collaboration diagram for CTSeq:
Public Member Functions | |
| CTSeq (void) | |
| ~CTSeq (void) | |
| Public Member Functions inherited from CTSeq_Base | |
| CTSeq_Base (void) | |
| virtual | ~CTSeq_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetSeqtype (void) const |
| Check if a value has been assigned to Seqtype data member. More... | |
| bool | CanGetSeqtype (void) const |
| Check if it is safe to call GetSeqtype method. More... | |
| void | ResetSeqtype (void) |
| Reset Seqtype data member. More... | |
| TSeqtype | GetSeqtype (void) const |
| Get the Seqtype member data. More... | |
| void | SetSeqtype (TSeqtype value) |
| Assign a value to Seqtype data member. More... | |
| TSeqtype & | SetSeqtype (void) |
| Assign a value to Seqtype data member. More... | |
| bool | IsSetGi (void) const |
| Check if a value has been assigned to Gi data member. More... | |
| bool | CanGetGi (void) const |
| Check if it is safe to call GetGi method. More... | |
| void | ResetGi (void) |
| Reset Gi data member. More... | |
| TGi | GetGi (void) const |
| Get the Gi member data. More... | |
| void | SetGi (TGi value) |
| Assign a value to Gi data member. More... | |
| TGi & | SetGi (void) |
| Assign a value to Gi data member. More... | |
| bool | IsSetAccver (void) const |
| Check if a value has been assigned to Accver data member. More... | |
| bool | CanGetAccver (void) const |
| Check if it is safe to call GetAccver method. More... | |
| void | ResetAccver (void) |
| Reset Accver data member. More... | |
| const TAccver & | GetAccver (void) const |
| Get the Accver member data. More... | |
| void | SetAccver (const TAccver &value) |
| Assign a value to Accver data member. More... | |
| void | SetAccver (TAccver &&value) |
| TAccver & | SetAccver (void) |
| Assign a value to Accver data member. More... | |
| bool | IsSetSid (void) const |
| Check if a value has been assigned to Sid data member. More... | |
| bool | CanGetSid (void) const |
| Check if it is safe to call GetSid method. More... | |
| void | ResetSid (void) |
| Reset Sid data member. More... | |
| const TSid & | GetSid (void) const |
| Get the Sid member data. More... | |
| void | SetSid (const TSid &value) |
| Assign a value to Sid data member. More... | |
| void | SetSid (TSid &&value) |
| TSid & | SetSid (void) |
| Assign a value to Sid data member. More... | |
| bool | IsSetLocal (void) const |
| Check if a value has been assigned to Local data member. More... | |
| bool | CanGetLocal (void) const |
| Check if it is safe to call GetLocal method. More... | |
| void | ResetLocal (void) |
| Reset Local data member. More... | |
| const TLocal & | GetLocal (void) const |
| Get the Local member data. More... | |
| void | SetLocal (const TLocal &value) |
| Assign a value to Local data member. More... | |
| void | SetLocal (TLocal &&value) |
| TLocal & | SetLocal (void) |
| Assign a value to Local data member. More... | |
| bool | IsSetTaxid (void) const |
| Check if a value has been assigned to Taxid data member. More... | |
| bool | CanGetTaxid (void) const |
| Check if it is safe to call GetTaxid method. More... | |
| void | ResetTaxid (void) |
| Reset Taxid data member. More... | |
| TTaxid | GetTaxid (void) const |
| Get the Taxid member data. More... | |
| void | SetTaxid (TTaxid value) |
| Assign a value to Taxid data member. More... | |
| TTaxid & | SetTaxid (void) |
| Assign a value to Taxid data member. More... | |
| bool | IsSetOrgname (void) const |
| Check if a value has been assigned to Orgname data member. More... | |
| bool | CanGetOrgname (void) const |
| Check if it is safe to call GetOrgname method. More... | |
| void | ResetOrgname (void) |
| Reset Orgname data member. More... | |
| const TOrgname & | GetOrgname (void) const |
| Get the Orgname member data. More... | |
| void | SetOrgname (const TOrgname &value) |
| Assign a value to Orgname data member. More... | |
| void | SetOrgname (TOrgname &&value) |
| TOrgname & | SetOrgname (void) |
| Assign a value to Orgname data member. More... | |
| bool | IsSetDefline (void) const |
| Check if a value has been assigned to Defline data member. More... | |
| bool | CanGetDefline (void) const |
| Check if it is safe to call GetDefline method. More... | |
| void | ResetDefline (void) |
| Reset Defline data member. More... | |
| const TDefline & | GetDefline (void) const |
| Get the Defline member data. More... | |
| void | SetDefline (const TDefline &value) |
| Assign a value to Defline data member. More... | |
| void | SetDefline (TDefline &&value) |
| TDefline & | SetDefline (void) |
| Assign a value to Defline data member. More... | |
| bool | IsSetLength (void) const |
| Check if a value has been assigned to Length data member. More... | |
| bool | CanGetLength (void) const |
| Check if it is safe to call GetLength method. More... | |
| void | ResetLength (void) |
| Reset Length data member. More... | |
| TLength | GetLength (void) const |
| Get the Length member data. More... | |
| void | SetLength (TLength value) |
| Assign a value to Length data member. More... | |
| TLength & | SetLength (void) |
| Assign a value to Length data member. More... | |
| bool | IsSetSequence (void) const |
| Check if a value has been assigned to Sequence data member. More... | |
| bool | CanGetSequence (void) const |
| Check if it is safe to call GetSequence method. More... | |
| void | ResetSequence (void) |
| Reset Sequence data member. More... | |
| const TSequence & | GetSequence (void) const |
| Get the Sequence member data. More... | |
| void | SetSequence (const TSequence &value) |
| Assign a value to Sequence data member. More... | |
| void | SetSequence (TSequence &&value) |
| TSequence & | SetSequence (void) |
| Assign a value to Sequence data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CTSeq_Base | Tparent |
Private Member Functions | |
| CTSeq (const CTSeq &value) | |
| CTSeq & | operator= (const CTSeq &value) |
Additional Inherited Members | |
| Public Types inherited from CTSeq_Base | |
| enum | ESeqtype { eSeqtype_nucleotide = 1 , eSeqtype_protein = 2 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_seqtype , e_gi , e_accver , e_sid , e_local , e_taxid , e_orgname , e_defline , e_length , e_sequence } |
| typedef ESeqtype | TSeqtype |
| typedef int | TGi |
| typedef string | TAccver |
| typedef string | TSid |
| typedef string | TLocal |
| typedef int | TTaxid |
| typedef string | TOrgname |
| typedef string | TDefline |
| typedef int | TLength |
| typedef string | TSequence |
| typedef Tparent::CMemberIndex< E_memberIndex, 11 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CTSeq_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ESeqtype (void) |
| Access to ESeqtype's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
The documentation for this class was generated from the following files:
