CMacro_action_choice Class Reference

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CMacro_action_choice –. More...

#include <objects/macro/Macro_action_choice.hpp>

Inheritance diagram for CMacro_action_choice:

Collaboration diagram for CMacro_action_choice:

Public Member Functions
	CMacro_action_choice (void)
	~CMacro_action_choice (void)
Public Member Functions inherited from CMacro_action_choice_Base
	CMacro_action_choice_Base (void)
virtual	~CMacro_action_choice_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
virtual void	Reset (void)
	Reset the whole object. More...
virtual void	ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	Which (void) const
	Which variant is currently selected. More...
void	CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
void	Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	IsAecr (void) const
	Check if variant Aecr is selected. More...
const TAecr &	GetAecr (void) const
	Get the variant data. More...
TAecr &	SetAecr (void)
	Select the variant. More...
void	SetAecr (TAecr &value)
	Select the variant and set its data. More...
bool	IsParse (void) const
	Check if variant Parse is selected. More...
const TParse &	GetParse (void) const
	Get the variant data. More...
TParse &	SetParse (void)
	Select the variant. More...
void	SetParse (TParse &value)
	Select the variant and set its data. More...
bool	IsAdd_feature (void) const
	Check if variant Add_feature is selected. More...
const TAdd_feature &	GetAdd_feature (void) const
	Get the variant data. More...
TAdd_feature &	SetAdd_feature (void)
	Select the variant. More...
void	SetAdd_feature (TAdd_feature &value)
	Select the variant and set its data. More...
bool	IsRemove_feature (void) const
	Check if variant Remove_feature is selected. More...
const TRemove_feature &	GetRemove_feature (void) const
	Get the variant data. More...
TRemove_feature &	SetRemove_feature (void)
	Select the variant. More...
void	SetRemove_feature (TRemove_feature &value)
	Select the variant and set its data. More...
bool	IsConvert_feature (void) const
	Check if variant Convert_feature is selected. More...
const TConvert_feature &	GetConvert_feature (void) const
	Get the variant data. More...
TConvert_feature &	SetConvert_feature (void)
	Select the variant. More...
void	SetConvert_feature (TConvert_feature &value)
	Select the variant and set its data. More...
bool	IsEdit_location (void) const
	Check if variant Edit_location is selected. More...
const TEdit_location &	GetEdit_location (void) const
	Get the variant data. More...
TEdit_location &	SetEdit_location (void)
	Select the variant. More...
void	SetEdit_location (TEdit_location &value)
	Select the variant and set its data. More...
bool	IsRemove_descriptor (void) const
	Check if variant Remove_descriptor is selected. More...
const TRemove_descriptor &	GetRemove_descriptor (void) const
	Get the variant data. More...
TRemove_descriptor &	SetRemove_descriptor (void)
	Select the variant. More...
void	SetRemove_descriptor (TRemove_descriptor &value)
	Select the variant and set its data. More...
bool	IsAutodef (void) const
	Check if variant Autodef is selected. More...
const TAutodef &	GetAutodef (void) const
	Get the variant data. More...
TAutodef &	SetAutodef (void)
	Select the variant. More...
void	SetAutodef (TAutodef &value)
	Select the variant and set its data. More...
bool	IsRemovesets (void) const
	Check if variant Removesets is selected. More...
void	SetRemovesets (void)
	Select the variant. More...
bool	IsTrim_junk_from_primer_seq (void) const
	Check if variant Trim_junk_from_primer_seq is selected. More...
void	SetTrim_junk_from_primer_seq (void)
	Select the variant. More...
bool	IsTrim_stop_from_complete_cds (void) const
	Check if variant Trim_stop_from_complete_cds is selected. More...
void	SetTrim_stop_from_complete_cds (void)
	Select the variant. More...
bool	IsFix_usa_and_states (void) const
	Check if variant Fix_usa_and_states is selected. More...
void	SetFix_usa_and_states (void)
	Select the variant. More...
bool	IsSynchronize_cds_partials (void) const
	Check if variant Synchronize_cds_partials is selected. More...
void	SetSynchronize_cds_partials (void)
	Select the variant. More...
bool	IsAdjust_for_consensus_splice (void) const
	Check if variant Adjust_for_consensus_splice is selected. More...
void	SetAdjust_for_consensus_splice (void)
	Select the variant. More...
bool	IsFix_pub_caps (void) const
	Check if variant Fix_pub_caps is selected. More...
const TFix_pub_caps &	GetFix_pub_caps (void) const
	Get the variant data. More...
TFix_pub_caps &	SetFix_pub_caps (void)
	Select the variant. More...
void	SetFix_pub_caps (TFix_pub_caps &value)
	Select the variant and set its data. More...
bool	IsRemove_seg_gaps (void) const
	Check if variant Remove_seg_gaps is selected. More...
void	SetRemove_seg_gaps (void)
	Select the variant. More...
bool	IsSort_fields (void) const
	Check if variant Sort_fields is selected. More...
const TSort_fields &	GetSort_fields (void) const
	Get the variant data. More...
TSort_fields &	SetSort_fields (void)
	Select the variant. More...
void	SetSort_fields (TSort_fields &value)
	Select the variant and set its data. More...
bool	IsApply_molinfo_block (void) const
	Check if variant Apply_molinfo_block is selected. More...
const TApply_molinfo_block &	GetApply_molinfo_block (void) const
	Get the variant data. More...
TApply_molinfo_block &	SetApply_molinfo_block (void)
	Select the variant. More...
void	SetApply_molinfo_block (TApply_molinfo_block &value)
	Select the variant and set its data. More...
bool	IsFix_caps (void) const
	Check if variant Fix_caps is selected. More...
const TFix_caps &	GetFix_caps (void) const
	Get the variant data. More...
TFix_caps &	SetFix_caps (void)
	Select the variant. More...
void	SetFix_caps (TFix_caps &value)
	Select the variant and set its data. More...
bool	IsFix_format (void) const
	Check if variant Fix_format is selected. More...
const TFix_format &	GetFix_format (void) const
	Get the variant data. More...
TFix_format &	SetFix_format (void)
	Select the variant. More...
void	SetFix_format (TFix_format &value)
	Select the variant and set its data. More...
bool	IsFix_spell (void) const
	Check if variant Fix_spell is selected. More...
void	SetFix_spell (void)
	Select the variant. More...
bool	IsRemove_duplicate_features (void) const
	Check if variant Remove_duplicate_features is selected. More...
const TRemove_duplicate_features &	GetRemove_duplicate_features (void) const
	Get the variant data. More...
TRemove_duplicate_features &	SetRemove_duplicate_features (void)
	Select the variant. More...
void	SetRemove_duplicate_features (TRemove_duplicate_features &value)
	Select the variant and set its data. More...
bool	IsRemove_lineage_notes (void) const
	Check if variant Remove_lineage_notes is selected. More...
void	SetRemove_lineage_notes (void)
	Select the variant. More...
bool	IsRemove_xrefs (void) const
	Check if variant Remove_xrefs is selected. More...
const TRemove_xrefs &	GetRemove_xrefs (void) const
	Get the variant data. More...
TRemove_xrefs &	SetRemove_xrefs (void)
	Select the variant. More...
void	SetRemove_xrefs (TRemove_xrefs &value)
	Select the variant and set its data. More...
bool	IsMake_gene_xrefs (void) const
	Check if variant Make_gene_xrefs is selected. More...
const TMake_gene_xrefs &	GetMake_gene_xrefs (void) const
	Get the variant data. More...
TMake_gene_xrefs &	SetMake_gene_xrefs (void)
	Select the variant. More...
void	SetMake_gene_xrefs (TMake_gene_xrefs &value)
	Select the variant and set its data. More...
bool	IsMake_bold_xrefs (void) const
	Check if variant Make_bold_xrefs is selected. More...
void	SetMake_bold_xrefs (void)
	Select the variant. More...
bool	IsFix_author (void) const
	Check if variant Fix_author is selected. More...
const TFix_author &	GetFix_author (void) const
	Get the variant data. More...
TFix_author &	SetFix_author (void)
	Select the variant. More...
void	SetFix_author (TFix_author &value)
	Select the variant and set its data. More...
bool	IsUpdate_sequences (void) const
	Check if variant Update_sequences is selected. More...
const TUpdate_sequences &	GetUpdate_sequences (void) const
	Get the variant data. More...
TUpdate_sequences &	SetUpdate_sequences (void)
	Select the variant. More...
void	SetUpdate_sequences (TUpdate_sequences &value)
	Select the variant and set its data. More...
bool	IsAdd_trans_splicing (void) const
	Check if variant Add_trans_splicing is selected. More...
void	SetAdd_trans_splicing (void)
	Select the variant. More...
bool	IsRemove_invalid_ecnumbers (void) const
	Check if variant Remove_invalid_ecnumbers is selected. More...
void	SetRemove_invalid_ecnumbers (void)
	Select the variant. More...
bool	IsCreate_tsa_ids (void) const
	Check if variant Create_tsa_ids is selected. More...
const TCreate_tsa_ids &	GetCreate_tsa_ids (void) const
	Get the variant data. More...
TCreate_tsa_ids &	SetCreate_tsa_ids (void)
	Select the variant. More...
void	SetCreate_tsa_ids (TCreate_tsa_ids &value)
	Select the variant and set its data. More...
bool	IsPerform_autofix (void) const
	Check if variant Perform_autofix is selected. More...
const TPerform_autofix &	GetPerform_autofix (void) const
	Get the variant data. More...
TPerform_autofix &	SetPerform_autofix (void)
	Select the variant. More...
void	SetPerform_autofix (TPerform_autofix &value)
	Select the variant and set its data. More...
bool	IsFix_sets (void) const
	Check if variant Fix_sets is selected. More...
const TFix_sets &	GetFix_sets (void) const
	Get the variant data. More...
TFix_sets &	SetFix_sets (void)
	Select the variant. More...
void	SetFix_sets (TFix_sets &value)
	Select the variant and set its data. More...
bool	IsApply_table (void) const
	Check if variant Apply_table is selected. More...
const TApply_table &	GetApply_table (void) const
	Get the variant data. More...
TApply_table &	SetApply_table (void)
	Select the variant. More...
void	SetApply_table (TApply_table &value)
	Select the variant and set its data. More...
bool	IsRemove_sequences (void) const
	Check if variant Remove_sequences is selected. More...
const TRemove_sequences &	GetRemove_sequences (void) const
	Get the variant data. More...
TRemove_sequences &	SetRemove_sequences (void)
	Select the variant. More...
void	SetRemove_sequences (TRemove_sequences &value)
	Select the variant and set its data. More...
bool	IsPropagate_sequence_technology (void) const
	Check if variant Propagate_sequence_technology is selected. More...
void	SetPropagate_sequence_technology (void)
	Select the variant. More...
bool	IsAdd_file_descriptors (void) const
	Check if variant Add_file_descriptors is selected. More...
const TAdd_file_descriptors &	GetAdd_file_descriptors (void) const
	Get the variant data. More...
TAdd_file_descriptors &	SetAdd_file_descriptors (void)
	Select the variant. More...
void	SetAdd_file_descriptors (TAdd_file_descriptors &value)
	Select the variant and set its data. More...
bool	IsPropagate_missing_old_name (void) const
	Check if variant Propagate_missing_old_name is selected. More...
void	SetPropagate_missing_old_name (void)
	Select the variant. More...
bool	IsAutoapply_structured_comments (void) const
	Check if variant Autoapply_structured_comments is selected. More...
void	SetAutoapply_structured_comments (void)
	Select the variant. More...
bool	IsReorder_structured_comments (void) const
	Check if variant Reorder_structured_comments is selected. More...
void	SetReorder_structured_comments (void)
	Select the variant. More...
bool	IsRemove_duplicate_structured_comments (void) const
	Check if variant Remove_duplicate_structured_comments is selected. More...
void	SetRemove_duplicate_structured_comments (void)
	Select the variant. More...
bool	IsLookup_taxonomy (void) const
	Check if variant Lookup_taxonomy is selected. More...
void	SetLookup_taxonomy (void)
	Select the variant. More...
bool	IsLookup_pubs (void) const
	Check if variant Lookup_pubs is selected. More...
void	SetLookup_pubs (void)
	Select the variant. More...
bool	IsTrim_terminal_ns (void) const
	Check if variant Trim_terminal_ns is selected. More...
void	SetTrim_terminal_ns (void)
	Select the variant. More...
bool	IsUpdate_replaced_ecnumbers (void) const
	Check if variant Update_replaced_ecnumbers is selected. More...
const TUpdate_replaced_ecnumbers &	GetUpdate_replaced_ecnumbers (void) const
	Get the variant data. More...
TUpdate_replaced_ecnumbers &	SetUpdate_replaced_ecnumbers (void)
	Select the variant. More...
void	SetUpdate_replaced_ecnumbers (TUpdate_replaced_ecnumbers &value)
	Select the variant and set its data. More...
bool	IsInstantiate_protein_titles (void) const
	Check if variant Instantiate_protein_titles is selected. More...
void	SetInstantiate_protein_titles (void)
	Select the variant. More...
bool	IsRetranslate_cds (void) const
	Check if variant Retranslate_cds is selected. More...
const TRetranslate_cds &	GetRetranslate_cds (void) const
	Get the variant data. More...
TRetranslate_cds &	SetRetranslate_cds (void)
	Select the variant. More...
void	SetRetranslate_cds (TRetranslate_cds &value)
	Select the variant and set its data. More...
bool	IsAdd_selenocysteine_except (void) const
	Check if variant Add_selenocysteine_except is selected. More...
void	SetAdd_selenocysteine_except (void)
	Select the variant. More...
bool	IsJoin_short_trnas (void) const
	Check if variant Join_short_trnas is selected. More...
void	SetJoin_short_trnas (void)
	Select the variant. More...
bool	IsAdjust_features_for_gaps (void) const
	Check if variant Adjust_features_for_gaps is selected. More...
const TAdjust_features_for_gaps &	GetAdjust_features_for_gaps (void) const
	Get the variant data. More...
TAdjust_features_for_gaps &	SetAdjust_features_for_gaps (void)
	Select the variant. More...
void	SetAdjust_features_for_gaps (TAdjust_features_for_gaps &value)
	Select the variant and set its data. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Private Types
typedef CMacro_action_choice_Base	Tparent

Private Member Functions
	CMacro_action_choice (const CMacro_action_choice &value)
CMacro_action_choice &	operator= (const CMacro_action_choice &value)

Additional Inherited Members
Public Types inherited from CMacro_action_choice_Base
enum	E_Choice {   e_not_set = 0 , e_Aecr , e_Parse , e_Add_feature ,   e_Remove_feature , e_Convert_feature , e_Edit_location , e_Remove_descriptor ,   e_Autodef , e_Removesets , e_Trim_junk_from_primer_seq , e_Trim_stop_from_complete_cds ,   e_Fix_usa_and_states , e_Synchronize_cds_partials , e_Adjust_for_consensus_splice , e_Fix_pub_caps ,   e_Remove_seg_gaps , e_Sort_fields , e_Apply_molinfo_block , e_Fix_caps ,   e_Fix_format , e_Fix_spell , e_Remove_duplicate_features , e_Remove_lineage_notes ,   e_Remove_xrefs , e_Make_gene_xrefs , e_Make_bold_xrefs , e_Fix_author ,   e_Update_sequences , e_Add_trans_splicing , e_Remove_invalid_ecnumbers , e_Create_tsa_ids ,   e_Perform_autofix , e_Fix_sets , e_Apply_table , e_Remove_sequences ,   e_Propagate_sequence_technology , e_Add_file_descriptors , e_Propagate_missing_old_name , e_Autoapply_structured_comments ,   e_Reorder_structured_comments , e_Remove_duplicate_structured_comments , e_Lookup_taxonomy , e_Lookup_pubs ,   e_Trim_terminal_ns , e_Update_replaced_ecnumbers , e_Instantiate_protein_titles , e_Retranslate_cds ,   e_Add_selenocysteine_except , e_Join_short_trnas , e_Adjust_features_for_gaps }
	Choice variants. More...
enum	E_ChoiceStopper { e_MaxChoice = 51 }
	Maximum+1 value of the choice variant enumerator. More...
typedef CAECR_action	TAecr
typedef CParse_action	TParse
typedef CApply_feature_action	TAdd_feature
typedef CRemove_feature_action	TRemove_feature
typedef CConvert_feature_action	TConvert_feature
typedef CEdit_feature_location_action	TEdit_location
typedef CRemove_descriptor_action	TRemove_descriptor
typedef CAutodef_action	TAutodef
typedef CFix_pub_caps_action	TFix_pub_caps
typedef CSort_fields_action	TSort_fields
typedef CMolinfo_block	TApply_molinfo_block
typedef CFix_caps_action	TFix_caps
typedef CFix_format_action	TFix_format
typedef CRemove_duplicate_feature_action	TRemove_duplicate_features
typedef CRemove_xrefs_action	TRemove_xrefs
typedef CMake_gene_xref_action	TMake_gene_xrefs
typedef CAuthor_fix_action	TFix_author
typedef CUpdate_sequences_action	TUpdate_sequences
typedef CCreate_TSA_ids_action	TCreate_tsa_ids
typedef CAutofix_action	TPerform_autofix
typedef CFix_sets_action	TFix_sets
typedef CApply_table_action	TApply_table
typedef CRemove_sequences_action	TRemove_sequences
typedef CAdd_descriptor_list_action	TAdd_file_descriptors
typedef CUpdate_replaced_ec_numbers_action	TUpdate_replaced_ecnumbers
typedef CRetranslate_cds_action	TRetranslate_cds
typedef CAdjust_features_for_gaps_action	TAdjust_features_for_gaps
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...
Static Public Member Functions inherited from CMacro_action_choice_Base
static string	SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CMacro_action_choice –.

Definition at line 65 of file Macro_action_choice.hpp.

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The documentation for this class was generated from the following files:

• include/objects/macro/Macro_action_choice.hpp
• src/objects/macro/Macro_action_choice.cpp