Search Toolkit Book for CDelta_item
#include <objects/seqfeat/Delta_item.hpp>
Inheritance diagram for CDelta_item:
Collaboration diagram for CDelta_item:
Public Member Functions | |
| CDelta_item (void) | |
| ~CDelta_item (void) | |
| void | SetDeletion (void) |
| void | SetDuplication (void) |
| void | SetInsertion (const CIUPACna &sequence, TSeqPos seq_length=0) |
| Public Member Functions inherited from CDelta_item_Base | |
| CDelta_item_Base (void) | |
| virtual | ~CDelta_item_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetSeq (void) const |
| Check if a value has been assigned to Seq data member. More... | |
| bool | CanGetSeq (void) const |
| Check if it is safe to call GetSeq method. More... | |
| void | ResetSeq (void) |
| Reset Seq data member. More... | |
| const TSeq & | GetSeq (void) const |
| Get the Seq member data. More... | |
| void | SetSeq (TSeq &value) |
| Assign a value to Seq data member. More... | |
| TSeq & | SetSeq (void) |
| Assign a value to Seq data member. More... | |
| bool | IsSetMultiplier (void) const |
| Multiplier allows representing a tandem, e.g. More... | |
| bool | CanGetMultiplier (void) const |
| Check if it is safe to call GetMultiplier method. More... | |
| void | ResetMultiplier (void) |
| Reset Multiplier data member. More... | |
| TMultiplier | GetMultiplier (void) const |
| Get the Multiplier member data. More... | |
| void | SetMultiplier (TMultiplier value) |
| Assign a value to Multiplier data member. More... | |
| TMultiplier & | SetMultiplier (void) |
| Assign a value to Multiplier data member. More... | |
| bool | IsSetMultiplier_fuzz (void) const |
| Check if a value has been assigned to Multiplier_fuzz data member. More... | |
| bool | CanGetMultiplier_fuzz (void) const |
| Check if it is safe to call GetMultiplier_fuzz method. More... | |
| void | ResetMultiplier_fuzz (void) |
| Reset Multiplier_fuzz data member. More... | |
| const TMultiplier_fuzz & | GetMultiplier_fuzz (void) const |
| Get the Multiplier_fuzz member data. More... | |
| void | SetMultiplier_fuzz (TMultiplier_fuzz &value) |
| Assign a value to Multiplier_fuzz data member. More... | |
| TMultiplier_fuzz & | SetMultiplier_fuzz (void) |
| Assign a value to Multiplier_fuzz data member. More... | |
| bool | IsSetAction (void) const |
| Check if a value has been assigned to Action data member. More... | |
| bool | CanGetAction (void) const |
| Check if it is safe to call GetAction method. More... | |
| void | ResetAction (void) |
| Reset Action data member. More... | |
| void | SetDefaultAction (void) |
| Assign default value to Action data member. More... | |
| TAction | GetAction (void) const |
| Get the Action member data. More... | |
| void | SetAction (TAction value) |
| Assign a value to Action data member. More... | |
| TAction & | SetAction (void) |
| Assign a value to Action data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CDelta_item_Base | Tparent |
Private Member Functions | |
| CDelta_item (const CDelta_item &value) | |
| CDelta_item & | operator= (const CDelta_item &value) |
Additional Inherited Members | |
| Public Types inherited from CDelta_item_Base | |
| enum | EAction { eAction_morph = 0 , eAction_offset = 1 , eAction_del_at = 2 , eAction_ins_before = 3 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_seq , e_multiplier , e_multiplier_fuzz , e_action } |
| typedef C_Seq | TSeq |
| typedef int | TMultiplier |
| typedef CInt_fuzz | TMultiplier_fuzz |
| typedef int | TAction |
| typedef Tparent::CMemberIndex< E_memberIndex, 5 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CDelta_item_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EAction (void) |
| Access to EAction's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 55 of file Delta_item.hpp.
Member Typedef Documentation
◆ Tparent
|
private |
Definition at line 57 of file Delta_item.hpp.
Constructor & Destructor Documentation
◆ CDelta_item() [1/2]
|
inline |
Definition at line 80 of file Delta_item.hpp.
◆ ~CDelta_item()
| CDelta_item::~CDelta_item | ( | void | ) |
Definition at line 52 of file Delta_item.cpp.
◆ CDelta_item() [2/2]
|
private |
Member Function Documentation
◆ operator=()
|
private |
◆ SetDeletion()
| void CDelta_item::SetDeletion | ( | void | ) |
Definition at line 56 of file Delta_item.cpp.
References CDelta_item_Base::eAction_del_at, CDelta_item_Base::SetAction(), CDelta_item_Base::SetSeq(), and CDelta_item_Base::C_Seq::SetThis().
◆ SetDuplication()
| void CDelta_item::SetDuplication | ( | void | ) |
Definition at line 62 of file Delta_item.cpp.
References CDelta_item_Base::SetMultiplier(), CDelta_item_Base::SetSeq(), and CDelta_item_Base::C_Seq::SetThis().
◆ SetInsertion()
Definition at line 68 of file Delta_item.cpp.
References CDelta_item_Base::eAction_ins_before, CAliasBase< TPrim >::Get(), CDelta_item_Base::SetAction(), CSeq_literal_Base::SetLength(), CDelta_item_Base::C_Seq::SetLiteral(), CDelta_item_Base::SetSeq(), and CSeq_literal_Base::SetSeq_data().
The documentation for this class was generated from the following files:
- include/objects/seqfeat/Delta_item.hpp
- src/objects/seqfeat/Delta_item.cpp
