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Add ability to cache ETL data sources (#2169)
* Add a rough prototype allowing a developer to pre-download data sources for all ETLs * Update code to be more production-ish * Move fetch to Extract part of ETL * Create a downloader to house all downloading operations * Remove unnecessary "name" in data source * Format source files with black * Fix issues from pylint and get the tests working with the new folder structure * Clean up files with black * Fix unzip test * Add caching notes to README * Fix tests (linting and case sensitivity bug) * Address PR comments and add API keys for census where missing * Merging comparator changes from main into this branch for the sake of the PR * Add note on using cache (-u) during pipeline
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52 changed files with 1787 additions and 686 deletions
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@ -3,9 +3,10 @@ import functools
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import pandas as pd
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from data_pipeline.config import settings
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from data_pipeline.etl.base import ExtractTransformLoad
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from data_pipeline.etl.datasource import DataSource
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from data_pipeline.etl.datasource import ZIPDataSource
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from data_pipeline.etl.base import ValidGeoLevel
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from data_pipeline.utils import get_module_logger
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from data_pipeline.utils import unzip_file_from_url
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logger = get_module_logger(__name__)
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@ -23,6 +24,26 @@ class PersistentPovertyETL(ExtractTransformLoad):
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PUERTO_RICO_EXPECTED_IN_DATA = False
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def __init__(self):
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# fetch
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self.poverty_url = (
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settings.AWS_JUSTICE40_DATASOURCES_URL + "/LTDB_Std_All_Sample.zip"
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)
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# source
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self.poverty_sources = [
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self.get_sources_path()
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/ "ltdb_std_all_sample"
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/ "ltdb_std_1990_sample.csv",
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self.get_sources_path()
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/ "ltdb_std_all_sample"
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/ "ltdb_std_2000_sample.csv",
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self.get_sources_path()
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/ "ltdb_std_all_sample"
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/ "ltdb_std_2010_sample.csv",
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]
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# output
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self.OUTPUT_PATH = self.DATA_PATH / "dataset" / "persistent_poverty"
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# Need to change hyperlink to S3
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@ -44,6 +65,13 @@ class PersistentPovertyETL(ExtractTransformLoad):
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self.df: pd.DataFrame
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def get_data_sources(self) -> [DataSource]:
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return [
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ZIPDataSource(
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source=self.poverty_url, destination=self.get_sources_path()
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)
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]
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def _join_input_dfs(self, dfs: list) -> pd.DataFrame:
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df = functools.reduce(
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lambda df_a, df_b: pd.merge(
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@ -75,28 +103,17 @@ class PersistentPovertyETL(ExtractTransformLoad):
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return df
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def extract(self) -> None:
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unzipped_file_path = self.get_tmp_path()
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def extract(self, use_cached_data_sources: bool = False) -> None:
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unzip_file_from_url(
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file_url=settings.AWS_JUSTICE40_DATASOURCES_URL
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+ "/LTDB_Std_All_Sample.zip",
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download_path=self.get_tmp_path(),
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unzipped_file_path=unzipped_file_path,
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)
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file_names = [
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"ltdb_std_1990_sample.csv",
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"ltdb_std_2000_sample.csv",
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"ltdb_std_2010_sample.csv",
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]
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super().extract(
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use_cached_data_sources
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) # download and extract data sources
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temporary_input_dfs = []
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for file_name in file_names:
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for file_name in self.poverty_sources:
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temporary_input_df = pd.read_csv(
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filepath_or_buffer=unzipped_file_path
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/ f"ltdb_std_all_sample/{file_name}",
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filepath_or_buffer=file_name,
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dtype={
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self.GEOID_TRACT_INPUT_FIELD_NAME_1: "string",
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self.GEOID_TRACT_INPUT_FIELD_NAME_2: "string",
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