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Add ability to cache ETL data sources (#2169)
* Add a rough prototype allowing a developer to pre-download data sources for all ETLs * Update code to be more production-ish * Move fetch to Extract part of ETL * Create a downloader to house all downloading operations * Remove unnecessary "name" in data source * Format source files with black * Fix issues from pylint and get the tests working with the new folder structure * Clean up files with black * Fix unzip test * Add caching notes to README * Fix tests (linting and case sensitivity bug) * Address PR comments and add API keys for census where missing * Merging comparator changes from main into this branch for the sake of the PR * Add note on using cache (-u) during pipeline
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52 changed files with 1787 additions and 686 deletions
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@ -1,6 +1,8 @@
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import pandas as pd
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from data_pipeline.config import settings
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from data_pipeline.etl.base import ExtractTransformLoad
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from data_pipeline.etl.datasource import DataSource
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from data_pipeline.etl.datasource import FileDataSource
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from data_pipeline.score import field_names
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from data_pipeline.utils import get_module_logger
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@ -15,12 +17,21 @@ class MichiganEnviroScreenETL(ExtractTransformLoad):
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"""
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def __init__(self):
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self.MICHIGAN_EJSCREEN_S3_URL = (
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# fetch
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self.michigan_ejscreen_url = (
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settings.AWS_JUSTICE40_DATASOURCES_URL
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+ "/michigan_ejscore_12212021.csv"
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)
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# input
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self.michigan_ejscreen_source = (
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self.get_sources_path() / "michigan_ejscore_12212021.csv"
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)
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# output
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self.CSV_PATH = self.DATA_PATH / "dataset" / "michigan_ejscreen"
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self.MICHIGAN_EJSCREEN_PRIORITY_COMMUNITY_THRESHOLD: float = 0.75
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self.COLUMNS_TO_KEEP = [
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@ -32,14 +43,28 @@ class MichiganEnviroScreenETL(ExtractTransformLoad):
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self.df: pd.DataFrame
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def extract(self) -> None:
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def get_data_sources(self) -> [DataSource]:
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return [
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FileDataSource(
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source=self.michigan_ejscreen_url,
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destination=self.michigan_ejscreen_source,
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)
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]
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def extract(self, use_cached_data_sources: bool = False) -> None:
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super().extract(
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use_cached_data_sources
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) # download and extract data sources
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self.df = pd.read_csv(
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filepath_or_buffer=self.MICHIGAN_EJSCREEN_S3_URL,
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filepath_or_buffer=self.michigan_ejscreen_source,
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dtype={"GEO_ID": "string"},
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low_memory=False,
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)
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def transform(self) -> None:
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self.df.rename(
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columns={
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"GEO_ID": self.GEOID_TRACT_FIELD_NAME,
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