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updated with codebook (#1573)

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Emma Nechamkin 2022-04-18 18:12:18 -04:00 • committed by GitHub
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2 changed files with 213 additions and 159 deletions
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41
data/data-pipeline/data_pipeline/etl/score/etl_score_geo.py
View file

@ -12,7 +12,13 @@ from data_pipeline.etl.sources.census.etl_utils import (
) )
from data_pipeline.etl.score.etl_utils import check_score_data_source from data_pipeline.etl.score.etl_utils import check_score_data_source
from data_pipeline.score import field_names from data_pipeline.score import field_names
from data_pipeline.utils import get_module_logger, zip_files from data_pipeline.content.schemas.download_schemas import CSVConfig
from data_pipeline.utils import (
get_module_logger,
zip_files,
load_yaml_dict_from_file,
load_dict_from_yaml_object_fields,
)
logger = get_module_logger(__name__) logger = get_module_logger(__name__)
@ -276,6 +282,33 @@ class GeoScoreETL(ExtractTransformLoad):
) )
logger.info("Completed writing usa-low") logger.info("Completed writing usa-low")
def create_esri_codebook(codebook):
"""temporary: helper to make a codebook for esri shapefile only"""
logger.info("Creating a codebook that uses the csv names")
codebook = (
pd.Series(codebook)
.reset_index()
.rename(
# kept as strings because no downstream impacts
columns={0: "column_name", "index": "shapefile_column"}
)
)
# open yaml config
downloadable_csv_config = load_yaml_dict_from_file(
self.CONTENT_CONFIG / "csv.yml", CSVConfig
)
column_rename_dict = load_dict_from_yaml_object_fields(
yaml_object=downloadable_csv_config["fields"],
object_key="score_name",
object_value="label",
)
codebook["column_description"] = codebook["column_name"].map(
column_rename_dict
)
codebook.to_csv(self.SCORE_SHP_CODE_CSV, index=False)
def write_esri_shapefile(): def write_esri_shapefile():
logger.info("Producing ESRI shapefiles") logger.info("Producing ESRI shapefiles")
# Note that esri shapefiles can't have long column names, so we borrow from the # Note that esri shapefiles can't have long column names, so we borrow from the
@ -295,16 +328,12 @@ class GeoScoreETL(ExtractTransformLoad):
if new_col != column: if new_col != column:
renaming_map[column] = new_col renaming_map[column] = new_col
pd.Series(codebook).reset_index().rename( create_esri_codebook(codebook)
# kept as strings because no downstream impacts
columns={0: "column", "index": "meaning"}
).to_csv(self.SCORE_SHP_CODE_CSV, index=False)
self.geojson_score_usa_high.rename(columns=renaming_map).to_file( self.geojson_score_usa_high.rename(columns=renaming_map).to_file(
self.SCORE_SHP_FILE self.SCORE_SHP_FILE
) )
logger.info("Completed writing shapefile") logger.info("Completed writing shapefile")
arcgis_zip_file_path = self.SCORE_SHP_PATH / "usa.zip" arcgis_zip_file_path = self.SCORE_SHP_PATH / "usa.zip"
arcgis_files = [] arcgis_files = []
for file in os.listdir(self.SCORE_SHP_PATH): for file in os.listdir(self.SCORE_SHP_PATH):

331
data/data-pipeline/poetry.lock generated
View file

@ -11,7 +11,7 @@ textwrap3 = ">=0.9.2"
[[package]] [[package]]
name = "appnope" name = "appnope"
version = "0.1.2" version = "0.1.3"
description = "Disable App Nap on macOS >= 10.9" description = "Disable App Nap on macOS >= 10.9"
category = "main" category = "main"
optional = false optional = false
@ -93,11 +93,11 @@ python-versions = "*"
[[package]] [[package]]
name = "beautifulsoup4" name = "beautifulsoup4"
version = "4.10.0" version = "4.11.1"
description = "Screen-scraping library" description = "Screen-scraping library"
category = "main" category = "main"
optional = false optional = false
python-versions = ">3.0.0" python-versions = ">=3.6.0"
[package.dependencies] [package.dependencies]
soupsieve = ">1.2" soupsieve = ">1.2"
@ -134,17 +134,20 @@ uvloop = ["uvloop (>=0.15.2)"]
[[package]] [[package]]
name = "bleach" name = "bleach"
version = "4.1.0" version = "5.0.0"
description = "An easy safelist-based HTML-sanitizing tool." description = "An easy safelist-based HTML-sanitizing tool."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.7"
[package.dependencies] [package.dependencies]
packaging = "*"
six = ">=1.9.0" six = ">=1.9.0"
webencodings = "*" webencodings = "*"
[package.extras]
css = ["tinycss2 (>=1.1.0)"]
dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"]
[[package]] [[package]]
name = "censusdata" name = "censusdata"
version = "1.15.post1" version = "1.15.post1"
@ -315,7 +318,7 @@ pipenv = ["pipenv"]
[[package]] [[package]]
name = "dynaconf" name = "dynaconf"
version = "3.1.7" version = "3.1.8"
description = "The dynamic configurator for your Python Project" description = "The dynamic configurator for your Python Project"
category = "main" category = "main"
optional = false optional = false
@ -326,6 +329,7 @@ all = ["redis", "ruamel.yaml", "configobj", "hvac"]
configobj = ["configobj"] configobj = ["configobj"]
ini = ["configobj"] ini = ["configobj"]
redis = ["redis"] redis = ["redis"]
test = ["pytest", "pytest-cov", "pytest-xdist", "pytest-mock", "flake8", "pep8-naming", "flake8-debugger", "flake8-print", "flake8-todo", "radon", "flask (>=0.12)", "django", "python-dotenv", "toml", "codecov", "redis", "hvac", "configobj"]
toml = ["toml"] toml = ["toml"]
vault = ["hvac"] vault = ["hvac"]
yaml = ["ruamel.yaml"] yaml = ["ruamel.yaml"]
@ -346,6 +350,17 @@ category = "dev"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.6"
[[package]]
name = "fastjsonschema"
version = "2.15.3"
description = "Fastest Python implementation of JSON schema"
category = "main"
optional = false
python-versions = "*"
[package.extras]
devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
[[package]] [[package]]
name = "filelock" name = "filelock"
version = "3.6.0" version = "3.6.0"
@ -396,7 +411,7 @@ pyflakes = ">=2.3.0,<2.4.0"
[[package]] [[package]]
name = "fonttools" name = "fonttools"
version = "4.31.2" version = "4.32.0"
description = "Tools to manipulate font files" description = "Tools to manipulate font files"
category = "main" category = "main"
optional = false optional = false
@ -439,7 +454,7 @@ python-versions = ">=3.5"
[[package]] [[package]]
name = "importlib-resources" name = "importlib-resources"
version = "5.6.0" version = "5.7.1"
description = "Read resources from Python packages" description = "Read resources from Python packages"
category = "main" category = "main"
optional = false optional = false
@ -475,7 +490,7 @@ toml = {version = ">=0.10.2", markers = "python_version > \"3.6\""}
[[package]] [[package]]
name = "ipykernel" name = "ipykernel"
version = "6.10.0" version = "6.13.0"
description = "IPython Kernel for Jupyter" description = "IPython Kernel for Jupyter"
category = "main" category = "main"
optional = false optional = false
@ -483,17 +498,18 @@ python-versions = ">=3.7"
[package.dependencies] [package.dependencies]
appnope = {version = "*", markers = "platform_system == \"Darwin\""} appnope = {version = "*", markers = "platform_system == \"Darwin\""}
debugpy = ">=1.0.0,<2.0" debugpy = ">=1.0"
ipython = ">=7.23.1" ipython = ">=7.23.1"
jupyter-client = "<8.0" jupyter-client = ">=6.1.12"
matplotlib-inline = ">=0.1.0,<0.2.0" matplotlib-inline = ">=0.1"
nest-asyncio = "*" nest-asyncio = "*"
packaging = "*"
psutil = "*" psutil = "*"
tornado = ">=5.0,<7.0" tornado = ">=6.1"
traitlets = ">=5.1.0,<6.0" traitlets = ">=5.1.0"
[package.extras] [package.extras]
test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] test = ["pytest (>=6.0)", "pytest-cov", "flaky", "ipyparallel", "pre-commit", "pytest-timeout"]
[[package]] [[package]]
name = "ipython" name = "ipython"
@ -641,7 +657,7 @@ qtconsole = "*"
[[package]] [[package]]
name = "jupyter-client" name = "jupyter-client"
version = "7.2.1" version = "7.2.2"
description = "Jupyter protocol implementation and client libraries" description = "Jupyter protocol implementation and client libraries"
category = "main" category = "main"
optional = false optional = false
@ -722,16 +738,19 @@ test = ["nbformat", "nose", "pip", "requests", "mock"]
[[package]] [[package]]
name = "jupyter-core" name = "jupyter-core"
version = "4.9.2" version = "4.10.0"
description = "Jupyter core package. A base package on which Jupyter projects rely." description = "Jupyter core package. A base package on which Jupyter projects rely."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.7"
[package.dependencies] [package.dependencies]
pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""}
traitlets = "*" traitlets = "*"
[package.extras]
test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
[[package]] [[package]]
name = "jupyter-highlight-selected-word" name = "jupyter-highlight-selected-word"
version = "0.2.0" version = "0.2.0"
@ -776,14 +795,11 @@ test = ["jupyter-contrib-core", "nose", "requests", "selenium", "mock"]
[[package]] [[package]]
name = "jupyterlab-pygments" name = "jupyterlab-pygments"
version = "0.1.2" version = "0.2.2"
description = "Pygments theme using JupyterLab CSS variables" description = "Pygments theme using JupyterLab CSS variables"
category = "main" category = "main"
optional = false optional = false
python-versions = "*" python-versions = ">=3.7"
[package.dependencies]
pygments = ">=2.4.1,<3"
[[package]] [[package]]
name = "jupyterlab-widgets" name = "jupyterlab-widgets"
@ -991,7 +1007,7 @@ ipython = "*"
[[package]] [[package]]
name = "nbclient" name = "nbclient"
version = "0.5.13" version = "0.6.0"
description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
category = "main" category = "main"
optional = false optional = false
@ -1004,12 +1020,12 @@ nest-asyncio = "*"
traitlets = ">=5.0.0" traitlets = ">=5.0.0"
[package.extras] [package.extras]
sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] sphinx = ["mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"]
test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "ipywidgets (<8.0.0)", "mypy", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"]
[[package]] [[package]]
name = "nbconvert" name = "nbconvert"
version = "6.4.5" version = "6.5.0"
description = "Converting Jupyter Notebooks" description = "Converting Jupyter Notebooks"
category = "main" category = "main"
optional = false optional = false
@ -1020,45 +1036,46 @@ beautifulsoup4 = "*"
bleach = "*" bleach = "*"
defusedxml = "*" defusedxml = "*"
entrypoints = ">=0.2.2" entrypoints = ">=0.2.2"
jinja2 = ">=2.4" jinja2 = ">=3.0"
jupyter-core = "*" jupyter-core = ">=4.7"
jupyterlab-pygments = "*" jupyterlab-pygments = "*"
MarkupSafe = ">=2.0" MarkupSafe = ">=2.0"
mistune = ">=0.8.1,<2" mistune = ">=0.8.1,<2"
nbclient = ">=0.5.0,<0.6.0" nbclient = ">=0.5.0"
nbformat = ">=4.4" nbformat = ">=5.1"
packaging = "*"
pandocfilters = ">=1.4.1" pandocfilters = ">=1.4.1"
pygments = ">=2.4.1" pygments = ">=2.4.1"
testpath = "*" tinycss2 = "*"
traitlets = ">=5.0" traitlets = ">=5.0"
[package.extras] [package.extras]
all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "tornado (>=6.1)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"]
docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"]
serve = ["tornado (>=4.0)"] serve = ["tornado (>=6.1)"]
test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)"] test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)"]
webpdf = ["pyppeteer (>=1,<1.1)"] webpdf = ["pyppeteer (>=1,<1.1)"]
[[package]] [[package]]
name = "nbformat" name = "nbformat"
version = "5.2.0" version = "5.3.0"
description = "The Jupyter Notebook format" description = "The Jupyter Notebook format"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.7"
[package.dependencies] [package.dependencies]
jsonschema = ">=2.4,<2.5.0 || >2.5.0" fastjsonschema = "*"
jsonschema = ">=2.6"
jupyter-core = "*" jupyter-core = "*"
traitlets = ">=4.1" traitlets = ">=4.1"
[package.extras] [package.extras]
fast = ["fastjsonschema"] test = ["check-manifest", "testpath", "pytest", "pre-commit"]
test = ["check-manifest", "fastjsonschema", "testpath", "pytest"]
[[package]] [[package]]
name = "nest-asyncio" name = "nest-asyncio"
version = "1.5.4" version = "1.5.5"
description = "Patch asyncio to allow nested event loops" description = "Patch asyncio to allow nested event loops"
category = "main" category = "main"
optional = false optional = false
@ -1126,7 +1143,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
[[package]] [[package]]
name = "pandas" name = "pandas"
version = "1.4.1" version = "1.4.2"
description = "Powerful data structures for data analysis, time series, and statistics" description = "Powerful data structures for data analysis, time series, and statistics"
category = "main" category = "main"
optional = false optional = false
@ -1244,15 +1261,15 @@ python-versions = ">=3.7"
[[package]] [[package]]
name = "platformdirs" name = "platformdirs"
version = "2.5.1" version = "2.5.2"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.7"
[package.extras] [package.extras]
docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]
[[package]] [[package]]
name = "pluggy" name = "pluggy"
@ -1268,7 +1285,7 @@ testing = ["pytest", "pytest-benchmark"]
[[package]] [[package]]
name = "prometheus-client" name = "prometheus-client"
version = "0.13.1" version = "0.14.1"
description = "Python client for the Prometheus monitoring system." description = "Python client for the Prometheus monitoring system."
category = "main" category = "main"
optional = false optional = false
@ -1279,7 +1296,7 @@ twisted = ["twisted"]
[[package]] [[package]]
name = "prompt-toolkit" name = "prompt-toolkit"
version = "3.0.28" version = "3.0.29"
description = "Library for building powerful interactive command lines in Python" description = "Library for building powerful interactive command lines in Python"
category = "main" category = "main"
optional = false optional = false
@ -1349,7 +1366,7 @@ python-versions = ">=3.5"
[[package]] [[package]]
name = "pylint" name = "pylint"
version = "2.13.3" version = "2.13.5"
description = "python code static checker" description = "python code static checker"
category = "main" category = "main"
optional = false optional = false
@ -1370,7 +1387,7 @@ testutil = ["gitpython (>3)"]
[[package]] [[package]]
name = "pypandoc" name = "pypandoc"
version = "1.7.4" version = "1.7.5"
description = "Thin wrapper for pandoc." description = "Thin wrapper for pandoc."
category = "main" category = "main"
optional = false optional = false
@ -1378,14 +1395,14 @@ python-versions = "^2.7 || ^3.6"
[[package]] [[package]]
name = "pyparsing" name = "pyparsing"
version = "3.0.7" version = "3.0.8"
description = "Python parsing module" description = "pyparsing module - Classes and methods to define and execute parsing grammars"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.6.8"
[package.extras] [package.extras]
diagrams = ["jinja2", "railroad-diagrams"] diagrams = ["railroad-diagrams", "jinja2"]
[[package]] [[package]]
name = "pyproj" name = "pyproj"
@ -1664,7 +1681,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
[[package]] [[package]]
name = "soupsieve" name = "soupsieve"
version = "2.3.1" version = "2.3.2.post1"
description = "A modern CSS selector implementation for Beautiful Soup." description = "A modern CSS selector implementation for Beautiful Soup."
category = "main" category = "main"
optional = false optional = false
@ -1697,17 +1714,6 @@ tornado = ">=4"
[package.extras] [package.extras]
test = ["pytest"] test = ["pytest"]
[[package]]
name = "testpath"
version = "0.6.0"
description = "Test utilities for code working with files and commands"
category = "main"
optional = false
python-versions = ">= 3.5"
[package.extras]
test = ["pytest"]
[[package]] [[package]]
name = "textwrap3" name = "textwrap3"
version = "0.9.2" version = "0.9.2"
@ -1716,6 +1722,21 @@ category = "dev"
optional = false optional = false
python-versions = "*" python-versions = "*"
[[package]]
name = "tinycss2"
version = "1.1.1"
description = "A tiny CSS parser"
category = "main"
optional = false
python-versions = ">=3.6"
[package.dependencies]
webencodings = ">=0.4"
[package.extras]
doc = ["sphinx", "sphinx-rtd-theme"]
test = ["pytest", "pytest-cov", "pytest-flake8", "pytest-isort", "coverage"]
[[package]] [[package]]
name = "toml" name = "toml"
version = "0.10.2" version = "0.10.2"
@ -1742,7 +1763,7 @@ python-versions = ">= 3.5"
[[package]] [[package]]
name = "tox" name = "tox"
version = "3.24.5" version = "3.25.0"
description = "tox is a generic virtualenv management and test command line tool" description = "tox is a generic virtualenv management and test command line tool"
category = "dev" category = "dev"
optional = false optional = false
@ -1807,7 +1828,7 @@ test = ["pytest"]
[[package]] [[package]]
name = "types-requests" name = "types-requests"
version = "2.27.15" version = "2.27.19"
description = "Typing stubs for requests" description = "Typing stubs for requests"
category = "main" category = "main"
optional = false optional = false
@ -1818,7 +1839,7 @@ types-urllib3 = "<1.27"
[[package]] [[package]]
name = "types-urllib3" name = "types-urllib3"
version = "1.26.11" version = "1.26.13"
description = "Typing stubs for urllib3" description = "Typing stubs for urllib3"
category = "main" category = "main"
optional = false optional = false
@ -1826,11 +1847,11 @@ python-versions = "*"
[[package]] [[package]]
name = "typing-extensions" name = "typing-extensions"
version = "4.1.1" version = "4.2.0"
description = "Backported and Experimental Type Hints for Python 3.6+" description = "Backported and Experimental Type Hints for Python 3.7+"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.7"
[[package]] [[package]]
name = "typing-inspect" name = "typing-inspect"
@ -1870,7 +1891,7 @@ jellyfish = "0.6.1"
[[package]] [[package]]
name = "virtualenv" name = "virtualenv"
version = "20.14.0" version = "20.14.1"
description = "Virtual Python Environment builder" description = "Virtual Python Environment builder"
category = "dev" category = "dev"
optional = false optional = false
@ -1931,15 +1952,15 @@ python-versions = "*"
[[package]] [[package]]
name = "zipp" name = "zipp"
version = "3.7.0" version = "3.8.0"
description = "Backport of pathlib-compatible object wrapper for zip files" description = "Backport of pathlib-compatible object wrapper for zip files"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.7"
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