From 2ce4cfe80e18c26ec0bb7ff37354e618d4c5a64a Mon Sep 17 00:00:00 2001 From: Emma Nechamkin <97977170+emma-nechamkin@users.noreply.github.com> Date: Mon, 18 Apr 2022 18:12:18 -0400 Subject: [PATCH] updated with codebook (#1573) --- .../data_pipeline/etl/score/etl_score_geo.py | 41 ++- data/data-pipeline/poetry.lock | 331 ++++++++++-------- 2 files changed, 213 insertions(+), 159 deletions(-) diff --git a/data/data-pipeline/data_pipeline/etl/score/etl_score_geo.py b/data/data-pipeline/data_pipeline/etl/score/etl_score_geo.py index d085f58f..9ea18073 100644 --- a/data/data-pipeline/data_pipeline/etl/score/etl_score_geo.py +++ b/data/data-pipeline/data_pipeline/etl/score/etl_score_geo.py @@ -12,7 +12,13 @@ from data_pipeline.etl.sources.census.etl_utils import ( ) from data_pipeline.etl.score.etl_utils import check_score_data_source from data_pipeline.score import field_names -from data_pipeline.utils import get_module_logger, zip_files +from data_pipeline.content.schemas.download_schemas import CSVConfig +from data_pipeline.utils import ( + get_module_logger, + zip_files, + load_yaml_dict_from_file, + load_dict_from_yaml_object_fields, +) logger = get_module_logger(__name__) @@ -276,6 +282,33 @@ class GeoScoreETL(ExtractTransformLoad): ) logger.info("Completed writing usa-low") + def create_esri_codebook(codebook): + """temporary: helper to make a codebook for esri shapefile only""" + logger.info("Creating a codebook that uses the csv names") + codebook = ( + pd.Series(codebook) + .reset_index() + .rename( + # kept as strings because no downstream impacts + columns={0: "column_name", "index": "shapefile_column"} + ) + ) + + # open yaml config + downloadable_csv_config = load_yaml_dict_from_file( + self.CONTENT_CONFIG / "csv.yml", CSVConfig + ) + column_rename_dict = load_dict_from_yaml_object_fields( + yaml_object=downloadable_csv_config["fields"], + object_key="score_name", + object_value="label", + ) + + codebook["column_description"] = codebook["column_name"].map( + column_rename_dict + ) + codebook.to_csv(self.SCORE_SHP_CODE_CSV, index=False) + def write_esri_shapefile(): logger.info("Producing ESRI shapefiles") # Note that esri shapefiles can't have long column names, so we borrow from the @@ -295,16 +328,12 @@ class GeoScoreETL(ExtractTransformLoad): if new_col != column: renaming_map[column] = new_col - pd.Series(codebook).reset_index().rename( - # kept as strings because no downstream impacts - columns={0: "column", "index": "meaning"} - ).to_csv(self.SCORE_SHP_CODE_CSV, index=False) + create_esri_codebook(codebook) self.geojson_score_usa_high.rename(columns=renaming_map).to_file( self.SCORE_SHP_FILE ) logger.info("Completed writing shapefile") - arcgis_zip_file_path = self.SCORE_SHP_PATH / "usa.zip" arcgis_files = [] for file in os.listdir(self.SCORE_SHP_PATH): diff --git a/data/data-pipeline/poetry.lock b/data/data-pipeline/poetry.lock index b7bdc3a5..13fd97dc 100644 --- a/data/data-pipeline/poetry.lock +++ b/data/data-pipeline/poetry.lock @@ -11,7 +11,7 @@ textwrap3 = ">=0.9.2" [[package]] name = "appnope" -version = "0.1.2" +version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" category = "main" optional = false @@ -93,11 +93,11 @@ python-versions = "*" [[package]] name = "beautifulsoup4" -version = "4.10.0" +version = "4.11.1" description = "Screen-scraping library" category = "main" optional = false -python-versions = ">3.0.0" +python-versions = ">=3.6.0" [package.dependencies] soupsieve = ">1.2" @@ -134,17 +134,20 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "bleach" -version = "4.1.0" +version = "5.0.0" description = "An easy safelist-based HTML-sanitizing tool." category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -packaging = "*" six = ">=1.9.0" webencodings = "*" +[package.extras] +css = ["tinycss2 (>=1.1.0)"] +dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"] + [[package]] name = "censusdata" version = "1.15.post1" @@ -315,7 +318,7 @@ pipenv = ["pipenv"] [[package]] name = "dynaconf" -version = "3.1.7" +version = "3.1.8" description = "The dynamic configurator for your Python Project" category = "main" optional = false @@ -326,6 +329,7 @@ all = ["redis", "ruamel.yaml", "configobj", "hvac"] configobj = ["configobj"] ini = ["configobj"] redis = ["redis"] +test = ["pytest", "pytest-cov", "pytest-xdist", "pytest-mock", "flake8", "pep8-naming", "flake8-debugger", "flake8-print", "flake8-todo", "radon", "flask (>=0.12)", "django", "python-dotenv", "toml", "codecov", "redis", "hvac", "configobj"] toml = ["toml"] vault = ["hvac"] yaml = ["ruamel.yaml"] @@ -346,6 +350,17 @@ category = "dev" optional = false python-versions = ">=3.6" +[[package]] +name = "fastjsonschema" +version = "2.15.3" +description = "Fastest Python implementation of JSON schema" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] + [[package]] name = "filelock" version = "3.6.0" @@ -396,7 +411,7 @@ pyflakes = ">=2.3.0,<2.4.0" [[package]] name = "fonttools" -version = "4.31.2" +version = "4.32.0" description = "Tools to manipulate font files" category = "main" optional = false @@ -439,7 +454,7 @@ python-versions = ">=3.5" [[package]] name = "importlib-resources" -version = "5.6.0" +version = "5.7.1" description = "Read resources from Python packages" category = "main" optional = false @@ -475,7 +490,7 @@ toml = {version = ">=0.10.2", markers = "python_version > \"3.6\""} [[package]] name = "ipykernel" -version = "6.10.0" +version = "6.13.0" description = "IPython Kernel for Jupyter" category = "main" optional = false @@ -483,17 +498,18 @@ python-versions = ">=3.7" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} -debugpy = ">=1.0.0,<2.0" +debugpy = ">=1.0" ipython = ">=7.23.1" -jupyter-client = "<8.0" -matplotlib-inline = ">=0.1.0,<0.2.0" +jupyter-client = ">=6.1.12" +matplotlib-inline = ">=0.1" nest-asyncio = "*" +packaging = "*" psutil = "*" -tornado = ">=5.0,<7.0" -traitlets = ">=5.1.0,<6.0" +tornado = ">=6.1" +traitlets = ">=5.1.0" [package.extras] -test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] +test = ["pytest (>=6.0)", "pytest-cov", "flaky", "ipyparallel", "pre-commit", "pytest-timeout"] [[package]] name = "ipython" @@ -641,7 +657,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.2.1" +version = "7.2.2" description = "Jupyter protocol implementation and client libraries" category = "main" optional = false @@ -722,16 +738,19 @@ test = ["nbformat", "nose", "pip", "requests", "mock"] [[package]] name = "jupyter-core" -version = "4.9.2" +version = "4.10.0" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} traitlets = "*" +[package.extras] +test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] + [[package]] name = "jupyter-highlight-selected-word" version = "0.2.0" @@ -776,14 +795,11 @@ test = ["jupyter-contrib-core", "nose", "requests", "selenium", "mock"] [[package]] name = "jupyterlab-pygments" -version = "0.1.2" +version = "0.2.2" description = "Pygments theme using JupyterLab CSS variables" category = "main" optional = false -python-versions = "*" - -[package.dependencies] -pygments = ">=2.4.1,<3" +python-versions = ">=3.7" [[package]] name = "jupyterlab-widgets" @@ -991,7 +1007,7 @@ ipython = "*" [[package]] name = "nbclient" -version = "0.5.13" +version = "0.6.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = false @@ -1004,12 +1020,12 @@ nest-asyncio = "*" traitlets = ">=5.0.0" [package.extras] -sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] +sphinx = ["mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] +test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "ipywidgets (<8.0.0)", "mypy", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] [[package]] name = "nbconvert" -version = "6.4.5" +version = "6.5.0" description = "Converting Jupyter Notebooks" category = "main" optional = false @@ -1020,45 +1036,46 @@ beautifulsoup4 = "*" bleach = "*" defusedxml = "*" entrypoints = ">=0.2.2" -jinja2 = ">=2.4" -jupyter-core = "*" +jinja2 = ">=3.0" +jupyter-core = ">=4.7" jupyterlab-pygments = "*" MarkupSafe = ">=2.0" mistune = ">=0.8.1,<2" -nbclient = ">=0.5.0,<0.6.0" -nbformat = ">=4.4" +nbclient = ">=0.5.0" +nbformat = ">=5.1" +packaging = "*" pandocfilters = ">=1.4.1" pygments = ">=2.4.1" -testpath = "*" +tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "tornado (>=6.1)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] -serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)"] +serve = ["tornado (>=6.1)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)"] webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.2.0" +version = "5.3.0" description = "The Jupyter Notebook format" category = "main" optional = false python-versions = ">=3.7" [package.dependencies] -jsonschema = ">=2.4,<2.5.0 || >2.5.0" +fastjsonschema = "*" +jsonschema = ">=2.6" jupyter-core = "*" traitlets = ">=4.1" [package.extras] -fast = ["fastjsonschema"] -test = ["check-manifest", "fastjsonschema", "testpath", "pytest"] +test = ["check-manifest", "testpath", "pytest", "pre-commit"] [[package]] name = "nest-asyncio" -version = "1.5.4" +version = "1.5.5" description = "Patch asyncio to allow nested event loops" category = "main" optional = false @@ -1126,7 +1143,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.4.1" +version = "1.4.2" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -1244,15 +1261,15 @@ python-versions = ">=3.7" [[package]] name = "platformdirs" -version = "2.5.1" +version = "2.5.2" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] +test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] [[package]] name = "pluggy" @@ -1268,7 +1285,7 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "prometheus-client" -version = "0.13.1" +version = "0.14.1" description = "Python client for the Prometheus monitoring system." category = "main" optional = false @@ -1279,7 +1296,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.28" +version = "3.0.29" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false @@ -1349,7 +1366,7 @@ python-versions = ">=3.5" [[package]] name = "pylint" -version = "2.13.3" +version = "2.13.5" description = "python code static checker" category = "main" optional = false @@ -1370,7 +1387,7 @@ testutil = ["gitpython (>3)"] [[package]] name = "pypandoc" -version = "1.7.4" +version = "1.7.5" description = "Thin wrapper for pandoc." category = "main" optional = false @@ -1378,14 +1395,14 @@ python-versions = "^2.7 || ^3.6" [[package]] name = "pyparsing" -version = "3.0.7" -description = "Python parsing module" +version = "3.0.8" +description = "pyparsing module - Classes and methods to define and execute parsing grammars" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.6.8" [package.extras] -diagrams = ["jinja2", "railroad-diagrams"] +diagrams = ["railroad-diagrams", "jinja2"] [[package]] name = "pyproj" @@ -1664,7 +1681,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "soupsieve" -version = "2.3.1" +version = "2.3.2.post1" description = "A modern CSS selector implementation for Beautiful Soup." category = "main" optional = false @@ -1697,17 +1714,6 @@ tornado = ">=4" [package.extras] test = ["pytest"] -[[package]] -name = "testpath" -version = "0.6.0" -description = "Test utilities for code working with files and commands" -category = "main" -optional = false -python-versions = ">= 3.5" - -[package.extras] -test = ["pytest"] - [[package]] name = "textwrap3" version = "0.9.2" @@ -1716,6 +1722,21 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "tinycss2" +version = "1.1.1" +description = "A tiny CSS parser" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +webencodings = ">=0.4" + +[package.extras] +doc = ["sphinx", "sphinx-rtd-theme"] +test = ["pytest", "pytest-cov", "pytest-flake8", "pytest-isort", "coverage"] + [[package]] name = "toml" version = "0.10.2" @@ -1742,7 +1763,7 @@ python-versions = ">= 3.5" [[package]] name = "tox" -version = "3.24.5" +version = "3.25.0" description = "tox is a generic virtualenv management and test command line tool" category = "dev" optional = false @@ -1807,7 +1828,7 @@ test = ["pytest"] [[package]] name = "types-requests" -version = "2.27.15" +version = "2.27.19" description = "Typing stubs for requests" category = "main" optional = false @@ -1818,7 +1839,7 @@ types-urllib3 = "<1.27" [[package]] name = "types-urllib3" -version = "1.26.11" +version = "1.26.13" description = "Typing stubs for urllib3" category = "main" optional = false @@ -1826,11 +1847,11 @@ python-versions = "*" [[package]] name = "typing-extensions" -version = "4.1.1" -description = "Backported and Experimental Type Hints for Python 3.6+" +version = "4.2.0" +description = "Backported and Experimental Type Hints for Python 3.7+" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "typing-inspect" @@ -1870,7 +1891,7 @@ jellyfish = "0.6.1" [[package]] name = "virtualenv" -version = "20.14.0" +version = "20.14.1" description = "Virtual Python Environment builder" category = "dev" optional = false @@ -1931,15 +1952,15 @@ python-versions = "*" [[package]] name = "zipp" -version = "3.7.0" +version = "3.8.0" description = "Backport of pathlib-compatible object wrapper for zip files" category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] [metadata] lock-version = "1.1" @@ -1952,8 +1973,8 @@ ansiwrap = [ {file = "ansiwrap-0.8.4.zip", hash = "sha256:ca0c740734cde59bf919f8ff2c386f74f9a369818cdc60efe94893d01ea8d9b7"}, ] appnope = [ - {file = "appnope-0.1.2-py2.py3-none-any.whl", hash = "sha256:93aa393e9d6c54c5cd570ccadd8edad61ea0c4b9ea7a01409020c9aa019eb442"}, - {file = "appnope-0.1.2.tar.gz", hash = "sha256:dd83cd4b5b460958838f6eb3000c660b1f9caf2a5b1de4264e941512f603258a"}, + {file = "appnope-0.1.3-py2.py3-none-any.whl", hash = "sha256:265a455292d0bd8a72453494fa24df5a11eb18373a60c7c0430889f22548605e"}, + {file = "appnope-0.1.3.tar.gz", hash = "sha256:02bd91c4de869fbb1e1c50aafc4098827a7a54ab2f39d9dcba6c9547ed920e24"}, ] argon2-cffi = [ {file = "argon2-cffi-21.3.0.tar.gz", hash = "sha256:d384164d944190a7dd7ef22c6aa3ff197da12962bd04b17f64d4e93d934dba5b"}, @@ -1999,16 +2020,16 @@ backcall = [ {file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"}, ] beautifulsoup4 = [ - {file = "beautifulsoup4-4.10.0-py3-none-any.whl", hash = "sha256:9a315ce70049920ea4572a4055bc4bd700c940521d36fc858205ad4fcde149bf"}, - {file = "beautifulsoup4-4.10.0.tar.gz", hash = "sha256:c23ad23c521d818955a4151a67d81580319d4bf548d3d49f4223ae041ff98891"}, + {file = "beautifulsoup4-4.11.1-py3-none-any.whl", hash = "sha256:58d5c3d29f5a36ffeb94f02f0d786cd53014cf9b3b3951d42e0080d8a9498d30"}, + {file = "beautifulsoup4-4.11.1.tar.gz", hash = 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