247 lines
27 KiB
XML
247 lines
27 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
||
|
||
<head><meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||
<!-- AppResources meta begin -->
|
||
<meta name="paf-app-resources" content="" />
|
||
<!-- AppResources meta end -->
|
||
|
||
<!-- TemplateResources meta begin -->
|
||
<meta name="paf_template" content="StdNCol" />
|
||
|
||
<!-- TemplateResources meta end -->
|
||
|
||
<!-- Page meta begin -->
|
||
<meta name="description" content="nsv4375018 - dbVar Variant - NCBI" />
|
||
<!-- Page meta end -->
|
||
|
||
<!-- Logger begin -->
|
||
<meta xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="ncbi_app" content="dbvar" /><meta xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="ncbi_pdid" content="VariantPage" />
|
||
<!-- Logger end -->
|
||
|
||
<title>nsv4375018 - dbVar Variant - NCBI</title>
|
||
|
||
<!-- PageFixtures headcontent begin -->
|
||
<meta name="ncbi_app" content="dbvar" />
|
||
|
||
|
||
<!-- PageFixtures headcontent end -->
|
||
|
||
<!-- AppResources external_resources begin -->
|
||
<script type="text/javascript" src="/core/jig/1.15.3/js/jig.min.js"></script>
|
||
|
||
<!-- AppResources external_resources end -->
|
||
|
||
<!-- Page headcontent begin -->
|
||
|
||
<!-- Page headcontent end -->
|
||
<!-- PageFixtures resources begin -->
|
||
<xi:include xmlns:xi="http://www.w3.org/2001/XInclude" href="http://127.0.0.1/sites/static/header_footer" xpointer="xmlns(x=http://www.w3.org/1999/xhtml) xpointer(//x:link[@rel='stylesheet'])"></xi:include>
|
||
|
||
<!-- PageFixtures resources end -->
|
||
<link rel="shortcut icon" href="//www.ncbi.nlm.nih.gov/favicon.ico" /><meta name="ncbi_phid" content="CE8E6C3C7D20094100000000005F0054.m_5" /><script type="text/javascript"><!--
|
||
var ScriptPath = '/portal/';
|
||
var objHierarchy = {"name":"PAFAppLayout","type":"Layout","realname":"PAFAppLayout",
|
||
"children":[{"name":"PAFAppLayout.AppController","type":"Cluster","realname":"PAFAppLayout.AppController",
|
||
"children":[{"name":"PAFAppLayout.AppController.AppResources","type":"Portlet","realname":"PAFAppLayout.AppController.AppResources","shortname":"AppResources"},
|
||
{"name":"PAFAppLayout.AppController.RequestProcessor","type":"Portlet","realname":"PAFAppLayout.AppController.RequestProcessor","shortname":"RequestProcessor"},
|
||
{"name":"PAFAppLayout.AppController.Controller","type":"Cluster","realname":"PAFAppLayout.AppController.Controller",
|
||
"children":[{"name":"PAFAppLayout.AppController.Controller.PAFPassController","type":"Portlet","realname":"PAFAppLayout.AppController.Controller.PAFControllerSelector.PAFPassController","shortname":"PAFPassController"}]},
|
||
{"name":"PAFAppLayout.AppController.Page","type":"Cluster","realname":"PAFAppLayout.AppController.Page",
|
||
"children":[{"name":"PAFAppLayout.AppController.Page.PAFPageSelectorData","type":"Portlet","realname":"PAFAppLayout.AppController.Page.PAFPageSelector.PAFPageSelectorData","shortname":"PAFPageSelectorData"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage","type":"Cluster","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage",
|
||
"children":[{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.MainPortlet","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.MainPortlet","shortname":"MainPortlet"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_P","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_P","shortname":"dbVar_VariantPage_P"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_Tabs","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_Tabs","shortname":"dbVar_VariantPage_Tabs"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_Ideo","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_VariantPage_Ideo","shortname":"dbVar_VariantPage_Ideo"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterP","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterP","shortname":"dbVar_Variant_FilterP"},
|
||
{"name":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterOtherResourcesP","type":"Portlet","realname":"PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterOtherResourcesP","shortname":"dbVar_Variant_FilterOtherResourcesP"}]}]},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures","type":"Cluster","realname":"PAFAppLayout.AppController.PageFixtures",
|
||
"children":[{"name":"PAFAppLayout.AppController.PageFixtures.PageFixturesP","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.PageFixturesP","shortname":"PageFixturesP"},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.SearchBar","type":"Cluster","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.SearchBar",
|
||
"children":[{"name":"PAFAppLayout.AppController.PageFixtures.SearchBar.SearchBarChooser","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.SearchBar.SearchBarChooser","shortname":"SearchBarChooser"},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.SearchBar.PAFSearchBar","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.SearchBar.PAFSearchBar","shortname":"PAFSearchBar"}]},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.HeaderFooter","type":"Cluster","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.HeaderFooter",
|
||
"children":[{"name":"PAFAppLayout.AppController.PageFixtures.HeaderFooter.NCBIBreadcrumbs","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.HeaderFooter.NCBIBreadcrumbs","shortname":"NCBIBreadcrumbs"},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.HeaderFooter.NCBIHelpDesk","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.HeaderFooter.NCBIHelpDesk","shortname":"NCBIHelpDesk"},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.HeaderFooter.NCBIApplog_NoScript_Ping","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.HeaderFooter.NCBIApplog_NoScript_Ping","shortname":"NCBIApplog_NoScript_Ping"}]},
|
||
{"name":"PAFAppLayout.AppController.PageFixtures.LocalNavPortlet","type":"Portlet","realname":"PAFAppLayout.AppController.PageFixtures.PAFPageFixtures.LocalNavPortlet","shortname":"LocalNavPortlet"}]},
|
||
{"name":"PAFAppLayout.AppController.TemplateResources","type":"Cluster","realname":"PAFAppLayout.AppController.TemplateResources",
|
||
"children":[{"name":"PAFAppLayout.AppController.TemplateResources.StdNColResources","type":"Portlet","realname":"PAFAppLayout.AppController.TemplateResources.PAFTemplateResources.StdNColResources","shortname":"StdNColResources"}]},
|
||
{"name":"PAFAppLayout.AppController.Logger","type":"Portlet","realname":"PAFAppLayout.AppController.Logger","shortname":"Logger"},
|
||
{"name":"PAFAppLayout.AppController.DebugConsole","type":"Portlet","realname":"PAFAppLayout.AppController.DebugConsole","shortname":"DebugConsole"}]}]};
|
||
--></script>
|
||
<meta name='referrer' content='origin-when-cross-origin'/><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4206115/css/4121862/3974050/3917732/251717/4139921/3428953/14534/45193/4062871/4005757/4054683/3430780/4119132/613474/9685/452438/4059265/4116270.css" /><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4206115/css/3529741/3349418/3529739.css" media="print" /><script type="text/javascript">
|
||
|
||
var ObjectLinks=[{i:0, ename: "p$ExL", esid:"*", sname: "p$ExL", ssid:"*", dname:"p$el", dsid:"0",m:"CopyValue",p:[],f: function(src, dst) {fn_CopyValue(src, dst);}}]
|
||
|
||
|
||
var ActiveNames = {"p$ExL":1, "PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterOtherResourcesP.Shutter":0};
|
||
</script></head>
|
||
<body class="dbvar VariantPage">
|
||
<div class="grid">
|
||
<div class="col twelve_col nomargin shadow">
|
||
<!-- System messages like service outage or JS required; this is handled by the TemplateResources portlet -->
|
||
<div class="sysmessages">
|
||
<noscript>
|
||
<p class="nojs">
|
||
<strong>Warning:</strong>
|
||
The NCBI web site requires JavaScript to function.
|
||
<a href="/guide/browsers/#enablejs" title="Learn how to enable JavaScript" target="_blank">more...</a>
|
||
</p>
|
||
</noscript>
|
||
</div>
|
||
<!--/.sysmessage-->
|
||
<div class="wrap">
|
||
<div class="page">
|
||
<div xmlns:xi="http://www.w3.org/2001/XInclude">
|
||
<xi:include href="http://127.0.0.1/sites/static/header_footer" xpointer="xmlns(x=http://www.w3.org/1999/xhtml) xpointer(//x:div[@id='universal_header'])"></xi:include>
|
||
</div>
|
||
<!--/.header-->
|
||
<div class="header">
|
||
<div class="res_logo"><h1 class="res_name"><a href="/dbvar/" title="dbVar home">dbVar</a></h1><h2 class="res_tagline">Database of genomic structural variation</h2></div>
|
||
<div class="search"><form method="get" action="/dbvar/"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="dbvar" selected="selected">dbVar</option><option value="gap">dbGaP</option><option value="clinvar">ClinVar</option><option value="medgen" class="last">MedGen</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene">Gene</option><option value="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search dbVar" value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="isEnabled:false,disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'no',afs:'yes'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div><input type="hidden" name="p$a" id="p$a" /><input type="hidden" name="p$l" id="p$l" value="PAFAppLayout" /><input type="hidden" name="p$st" id="p$st" value="dbvar" /><input name="SessionId" id="SessionId" value="CE8B5AF87C7FFCB1_0191SID" disabled="disabled" type="hidden" /><input name="Snapshot" id="Snapshot" value="/projects/dbVar/dbVar@9.7" disabled="disabled" type="hidden" /></form><ul class="inline_list searchlinks"><li>
|
||
<a href="/dbvar/advanced">Advanced</a>
|
||
</li><li>
|
||
<a class="help" href="/dbvar/content/help">Help</a>
|
||
</li></ul></div>
|
||
|
||
</div>
|
||
<div class="nav_and_browser">
|
||
|
||
</div>
|
||
|
||
<!-- was itemctrl -->
|
||
<div class="container">
|
||
<div id="maincontent" class="content col twelve_col last">
|
||
<div class="col1">
|
||
<div class="dbvar-header">
|
||
<span class="info-left">
|
||
<div class="dbvar-info" id="variant_information_set"><h3>nsv4375018</h3><div class="long-info"><ul class="plain_ul"><li><span class="label">Organism: </span><a href="/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606" title="Link to Taxonomy Browser ID 9606">Homo sapiens</a></li></ul></div><span class="info"><ul class="plain_ul"><li><span class="label">Study:</span><a href="/dbvar/studies/nstd173" title="Link to Study nstd173">nstd173 (Zarrei et al. 2019)</a></li><li><span class="label">Variant Type:</span>copy number variation</li><li><span class="label">Method Type:</span>SNP array</li><li><span class="label">Submitted on:</span>GRCh37 (hg19)</li></ul></span><span class="info"><ul class="plain_ul"><li><span class="label">Variant Calls:</span>2</li><li><span class="label">Validation:</span>Not tested</li><li><span class="label">Clinical Assertions: </span>No</li><li><span class="label">Region Size:</span>141,226</li></ul></span><div class="long-info"><ul class="plain_ul"><li><span class="label">Publication(s):</span><a href="/pubmed?cmd=search&term=31602316" title="Link to study Zarrei et al. 2019">Zarrei et al. 2019</a></li></ul></div></div>
|
||
</span>
|
||
<span class="info-ideo">
|
||
<div class="dbvar-ideo"><div id="ideo-container"></div><div id="ideo-comments"><span id="ideo-desc"></span><span id="ideo-legend"></span></div><link rel="stylesheet" type="text/css" href="/projects/ideogram/3.1/css/ideo.css" /><script type="text/javascript" src="/projects/ideogram/3.1/js/ideo.js"></script><script type="text/javascript">
|
||
var ideoConfig = {
|
||
index: 0,
|
||
width: 12,
|
||
height: 160,
|
||
align: "top",
|
||
labelPosition: "before",
|
||
|
||
variant: "nsv4375018",
|
||
|
||
placement:[
|
||
{
|
||
accession:"GCF_000001405.25",name:"GRCh37 (hg19)",taxid:9606,start:98025640,stop:98166865,chr:"Chr2",
|
||
dummy: null
|
||
}]
|
||
,
|
||
blockedIds: [37012]
|
||
};
|
||
</script></div>
|
||
</span>
|
||
<span class="info-right">
|
||
<!-- <component id="dbVar_Variant_FilterP"/> -->
|
||
<div class="portlet variantotherresources_portlet">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Links to Other Resources</h3>
|
||
</div>
|
||
<a name="PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterOtherResourcesP.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Links to Other Resources" id="PAFAppLayout.AppController.Page.dbVar_VariantPage.dbVar_Variant_FilterOtherResourcesP.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content variantotherresources_content">
|
||
<ul class="emphasis">
|
||
<li>
|
||
<a href="/gene?LinkName=dbvar_gene&from_uid=49465751">
|
||
Overlapping Genes
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<div class="tertiary">Source: NCBI</div>
|
||
</div>
|
||
</div>
|
||
|
||
</span>
|
||
</div>
|
||
</div>
|
||
<!--/.col1-->
|
||
<div class="col2">
|
||
|
||
</div>
|
||
<!--/.col2-->
|
||
<div class="col3">
|
||
<div class="tabbed-contents">
|
||
<div data-jig="ncbitabs" id="dbvar-tabs"><ul><li><a id="VariantGenome1" href="#VariantGenome">Genome View</a></li><li><a id="VariantDetails1" href="#VariantDetails">Variant Region Details and Evidence</a></li><li><a id="VariantValidation1" href="#VariantValidation">Validation Information</a></li><li><a id="VariantClinical1" href="#VariantClinical">Clinical Assertions</a></li><li><a id="VariantGenotype1" href="#VariantGenotype">Genotype Information</a></li></ul><div id="VariantGenome"><script xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" type="text/javascript">
|
||
window.VariantInfo = {
|
||
variant: "nsv4375018",
|
||
title: [
|
||
"Genome View",
|
||
"Variant Region Details and Evidence",
|
||
"Validation Information",
|
||
"Clinical Assertions",
|
||
"Genotype Information"
|
||
]
|
||
};
|
||
</script><script xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" type="text/javascript" src="/projects/sviewer/js/sviewer.js" id="autoload"></script><div class="seqviewer"><div class="seqviewer-assmb"><h3>Genome View</h3><span class="seqviewer-sel"><span class="label">Select assembly:</span><select name="seqviewermenu" id="dbvar-graphics-menu"><option xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" name="accession" value="?id=NC_000002.11&appname=dbvar&tracks=[key:segment_map_track][key:dbvar_track,annots:NA000228605.1,linkedFeat:Packed,highlights:nsv4375018][key:gene_model_track,annots:Unnamed,Histogram:false,merge:Single%20line][key:SNP_track]&noslider=1&embedded=false&from=98011518&to=98180988" selected="selected">GRCh37 (hg19): Chr2</option></select></span><span class="seqviewer-comment"><span xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" class=""><div class="left seqviewer-comment-indent"><span class="label">Overlapping variant regions from other studies: </span><b>644</b> SVs from <b>77</b> studies. See in: <a href="/dbvar/browse/org/?taxid=9606&assm=GCF_000001405.25&chr=NC_000002.11&from=98011518&to=98180988&studies=nstd173,estd1,estd188,estd192,estd194,estd195,estd197,estd199,estd20,estd201,estd203,estd209,estd210,estd212,estd214,estd217,estd219,estd229,estd231,estd24,estd55,estd59,nstd100,nstd101,nstd106,nstd107,nstd11,nstd111,nstd112,nstd113,nstd12,nstd122,nstd128,nstd130,nstd137,nstd140,nstd151,nstd152,nstd158,nstd16,nstd162,nstd168,nstd174,nstd183,nstd186,nstd195,nstd198,nstd199,nstd2,nstd200,nstd204,nstd206,nstd207,nstd209,nstd21,nstd212,nstd213,nstd214,nstd22,nstd223,nstd229,nstd237,nstd37,nstd4,nstd47,nstd49,nstd53,nstd54,nstd6,nstd65,nstd71,nstd73,nstd79,nstd82,nstd84,nstd86,nstd97,nstd99&variant=nsv4375018">genome view</a> </div><div class="right"><span class="label">Submitted genomic</span><a href="/projects/sviewer?id=NC_000002.11&test=false&tracks=[key:SNP_track][key:segment_map_track][key:gene_model_track,annots:Unnamed][key:dbvar_track,annots:NA000228605.1,highlights:nsv4375018]&from=98011518&to=98180988"><span class="range range-start">98,025,640</span>-<span class="range range-stop">98,166,865</span></a><a href="#"><img src="//static.pubmed.gov/portal/portal3rc.fcgi/4206115/img/964170" alt="Question Mark" height="14" width="14" title="Genomic location given is the largest possible for a feature. See Variant Region Details for more detailed placement information." /></a></div></span></span></div><div id="seqviewer" class="SeqViewerApp"><a href="?id=NC_000002.11&appname=dbvar&tracks=[key:segment_map_track][key:dbvar_track,annots:NA000228605.1,linkedFeat:Packed,highlights:nsv4375018][key:gene_model_track,annots:Unnamed,Histogram:false,merge:Single%20line][key:SNP_track]&noslider=1&embedded=false&from=98011518&to=98180988"></a></div></div></div><div id="VariantDetails"><script type="text/javascript"></script><div xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" class="info_segment" id="placement_set"><h3>Variant Region Placement Information</h3><div class="ui-ncbigrid-outer-div"><div class="ui-ncbigrid-inner-div"><table id="regplacetable" data-jig="ncbigrid" data-is-sortable="true" data-is-scrollable="false" data-column-types="["fnc:strnumSort","str", "fnc:strnumSort", "str", "fnc:strnumSort","fnc:strnumSort","numComma","numComma","numComma","numComma","numComma","numComma"]"><thead><tr><th>Variant Region ID</th><th>Placement Type</th><th>Assembly</th><th>Assembly Unit</th><th>Sequence ID</th><th>Chr</th><th>Inner Start</th><th>Inner Stop</th></tr></thead><tbody><tr><td>nsv4375018</td><td>Submitted genomic</td><td>GRCh37 (hg19)</td><td>Primary Assembly</td><td>NC_000002.11</td><td>Chr2</td><td>98,025,640</td><td>98,166,865</td></tr></tbody></table></div></div></div><div xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" class="info_segment" id="support_variant_set"><h3>Variant Call Information</h3><div class="ui-ncbigrid-outer-div"><div class="ui-ncbigrid-inner-div"><table id="calltable" class="jig-ncbigrid" data-jig="ncbigrid" data-is-scrollable="false" data-is-sortable="true" data-jigconfig="columnTypes:['str','str','str', 'str','str', 'numComma', 'str'], sortFunctions:[strnumSort,null, strnumSort, null,null, null, null]"><thead><tr><th>Variant Call ID</th><th>Type</th><th>Sample ID</th><th>Method</th><th>Analysis</th><th>Other Calls in this Sample and Study</th></tr></thead><tbody><tr><td>nssv15692650</td><td>copy number loss</td><td>OCD69-896071</td><td>SNP array</td><td>Genotyping</td><td><a href="/dbvar/?dbvartab=variant&term=OCD69-896071%20AND%20nstd173" title="Retrieve full list of variant regions with calls matching this sample">22</a></td></tr><tr><td>nssv15702957</td><td>copy number loss</td><td>237508</td><td>SNP array</td><td>Genotyping</td><td><a href="/dbvar/?dbvartab=variant&term=237508%20AND%20nstd173" title="Retrieve full list of variant regions with calls matching this sample">39</a></td></tr></tbody></table></div></div></div><div xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" class="info_segment" id="support_variant_placement_set"><h3>Variant Call Placement Information</h3><div class="ui-ncbigrid-outer-div"><div class="ui-ncbigrid-inner-div"><table id="callplacetable" class="jig-ncbigrid" data-jig="ncbigrid" data-is-scrollable="false" data-is-sortable="true" height="auto" data-jigconfig="columnTypes:['str','str', 'str', 'str', 'str', 'str', 'numComma', 'numComma', 'str'], sortFunctions:[strnumSort,null, null, strnumSort, strnumSort, strnumSort, null, null, null]"><thead><tr><th>Variant Call ID</th><th>Placement Type</th><th>HGVS</th><th>Assembly</th><th>Sequence ID</th><th>Chr</th><th>Inner Start</th><th>Inner Stop</th></tr></thead><tbody><tr><td>nssv15692650</td><td>Submitted genomic</td><td>NC_000002.11:g.(?_<br />98025640)_(9816686<br />5_?)del</td><td>GRCh37 (hg19)</td><td>NC_000002.11</td><td>Chr2</td><td>98,025,640</td><td>98,166,865</td></tr><tr><td>nssv15702957</td><td>Submitted genomic</td><td>NC_000002.11:g.(?_<br />98025640)_(9816686<br />5_?)del</td><td>GRCh37 (hg19)</td><td>NC_000002.11</td><td>Chr2</td><td>98,025,640</td><td>98,166,865</td></tr></tbody></table></div></div></div></div><div id="VariantValidation"><h3 class="nodata">No validation data were submitted for this variant</h3></div><div id="VariantClinical"><h3 class="nodata">No clinical assertion data were submitted for this variant</h3></div><div id="VariantGenotype"><h3 class="nodata">No genotype data were submitted for this variant</h3></div></div>
|
||
</div>
|
||
</div>
|
||
<!--/.col3-->
|
||
<div class="col4">
|
||
|
||
</div>
|
||
<!--/.col4-->
|
||
<div class="col5">
|
||
|
||
</div>
|
||
<div class="col6">
|
||
|
||
</div>
|
||
<div class="col7">
|
||
|
||
</div>
|
||
<div class="col8">
|
||
|
||
</div>
|
||
<div class="col9">
|
||
|
||
</div>
|
||
</div><!--/.content-->
|
||
</div><!--/.container-->
|
||
<div id="NCBIFooter_dynamic">
|
||
<div class="breadcrumbs">You are here:
|
||
<span id="breadcrumb_text"><a href="/guide/">NCBI</a></span></div>
|
||
<a id="help-desk-link" class="help_desk" href="https://support.ncbi.nlm.nih.gov/ics/support/default.asp?Time=2025-03-12T18:05:23-04:00&Snapshot=%2Fprojects%2FdbVar%2FdbVar@9.7&Host=portal107&ncbi_phid=CE8E6C3C7D20094100000000005F0054&ncbi_session=CE8B5AF87C7FFCB1_0191SID&from=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fdbvar%2Fvariants%2Fnssv15702957%2F&Ncbi_App=dbvar&Page=VariantPage&style=classic&deptID=28049" target="_blank">Support Center</a>
|
||
<noscript><img alt="" src="/stat?jsdisabled=true&ncbi_app=dbvar&ncbi_db=&ncbi_pdid=VariantPage&ncbi_phid=CE8E6C3C7D20094100000000005F0054" /></noscript>
|
||
</div>
|
||
|
||
|
||
<div xmlns:xi="http://www.w3.org/2001/XInclude">
|
||
<xi:include href="http://127.0.0.1/sites/static/header_footer" xpointer="xmlns(x=http://www.w3.org/1999/xhtml) xpointer(//x:div[@id='footer'])"></xi:include>
|
||
</div>
|
||
<!--/.footer-->
|
||
|
||
</div>
|
||
<!--/.page-->
|
||
</div>
|
||
<!--/.wrap-->
|
||
<span class="PAFAppResources"></span>
|
||
|
||
|
||
</div><!-- /.twelve_col -->
|
||
</div>
|
||
<!-- /.grid -->
|
||
|
||
|
||
|
||
<!-- usually for JS scripts at page bottom -->
|
||
<span class="pagefixtures"></span>
|
||
|
||
|
||
<!-- CE8B5AF87C7FFCB1_0191SID /projects/dbVar/dbVar@9.7 portal107 v4.1.r689238 Tue, Oct 22 2024 16:10:51 -->
|
||
<span id="portal-csrf-token" style="display:none" data-token="CE8B5AF87C7FFCB1_0191SID"></span>
|
||
|
||
|
||
<script type='text/javascript' src='/portal/js/portal.js'></script><script type="text/javascript" src="//static.pubmed.gov/portal/portal3rc.fcgi/4206115/js/3879255/4121861/4206117/4087685/3929448/4036575/35445/31971/35962/4120814.js" snapshot="dbvar"></script></body>
|
||
</html>
|
||
|