110 lines
57 KiB
HTML
110 lines
57 KiB
HTML
<!DOCTYPE html>
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="Upcoming Changes to Virus Data Resources at NCBI - NCBI Insights"><meta property="og:description" content="Effective June 2024, NCBI Virus will replace legacy virus web resources Coming soon! As part of our ongoing effort to enhance your experience and modernize our services, several of our legacy virus-related web resources will be replaced by NCBI Virus – our community portal for viral sequence data. NCBI Virus is more comprehensive, modernized, and … Continue reading Upcoming Changes to Virus Data Resources at NCBI →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2023/10/19/changes-virus-data-resources-ncbi/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2023-10-19T13:38:56+00:00"><meta property="article:modified_time" content="2024-04-05T19:15:22+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/NCBI-Virus_Redirect-4-e1697657977948.png"><meta property="og:image:width" content="1100"><meta property="og:image:height" content="575"><meta property="og:image:type" content="image/png"><meta name="author" content="NCBI Staff"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@NCBI"><meta name="twitter:site" content="@NCBI"><meta 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<h1 class="amp-wp-title">Upcoming Changes to Virus Data Resources at NCBI</h1>
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<time datetime="2023-10-19T13:38:56+00:00">
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1 year ago </time>
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<figure class="amp-wp-article-featured-image wp-caption">
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<amp-img width="1024" height="535" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1024%2C535&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Computer screen with the Virus Variation Resource page on screen. Text says: Important update! Virus Resources at NCBI Legacy virus resources will be replaced by NCBI Virus effective May 2024" data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjUzNSIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Computer screen with the Virus Variation Resource page on screen. Text says: Important update! Virus Resources at NCBI Legacy virus resources will be replaced by NCBI Virus effective May 2024" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1024%2C535&ssl=1"></amp-img> </figure>
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<div class="amp-wp-article-content">
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<h3><i><span data-contrast="auto">Effective June 2024, NCBI Virus will replace legacy virus web resources</span></i><span data-ccp-props="{}"> </span></h3>
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<p><span data-contrast="auto">Coming soon! As part of our </span><a href="https://ncbiinsights.ncbi.nlm.nih.gov/2023/10/18/ncbi-datasets-access-sequence-data/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019"><span data-contrast="none">ongoing effort</span></a><span data-contrast="auto"> to enhance your experience and modernize our services, several of our legacy virus-related web resources will be replaced by </span><a href="https://www.ncbi.nlm.nih.gov/labs/virus/vssi/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019#/"><span data-contrast="none">NCBI Virus</span></a> <span data-contrast="auto">– our community portal for viral sequence data. NCBI Virus is more comprehensive, modernized, and has more powerful features and analysis tools than our legacy resources.</span><span data-ccp-props="{}"> </span><span data-ccp-props="{}"> </span></p>
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<h5>What will change?</h5>
|
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<p><span data-contrast="auto">Below is a list of the legacy virus resources that will be replaced by NCBI Virus. </span><span data-contrast="auto">The list includes a description of features that will continue to be supported through NCBI Virus:</span><span data-ccp-props="{}"> </span></p>
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<ul>
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||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><a href="https://www.ncbi.nlm.nih.gov/genome/viruses/variation/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019">Virus Variation Resource</a>:</span><span data-ccp-props="{}"> </span>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">NCBI Virus supports retrieval of RefSeq, nucleotide, and protein sequences for rotavirus, dengue viruses, west Nile virus, ebolavirus, Zika virus, and MERS coronavirus. Filters to select relevant datasets, analysis tools such as the Multiple Sequence Alignment Viewer (MSAV) and downloading data in several formats continues to be available through NCBI Virus. <a href="https://www.ncbi.nlm.nih.gov/labs/virus/vssi/docs/help/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019">Get further details</a> on how to use these features in NCBI Virus. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">For Rotavirus, we plan to restore standardized segment names and grouped genomes in NCBI Virus in the future. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>NOTE</strong>: The redirects that are planned for completion by June 2024 will NOT impact the <a href="https://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi?go=database&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019">Influenza Virus Resource</a> in any way. The Influenza Virus Resource will continue to be available, serving up data to support our Flu-research community.</span></li>
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||
</ul>
|
||
</li>
|
||
</ul>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><a href="https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?taxid=10239&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019">Viral Genomes Browser</a>: </span>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">NCBI Virus supports taxonomy-based filtering for RefSeq, nucleotide, and protein sequences, as well as quality metrics to help you find complete genomes. Filters for specific hosts or host taxonomy, molecular genome composition, and several other characteristics are also available. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">NCBI Virus also supports curated segment names for RefSeq. We plan to provide standardized segment names and grouped genomes for GenBank sequences in NCBI Virus in the future. </span></li>
|
||
</ul>
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</li>
|
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</ul>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="26" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><a href="https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=ncbi-virus-replace-legacy-20221019">Retroviruses</a>: </span>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="26" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">The HIV-1 Human Interaction Database will no longer be supported. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="26" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Retrovirus RefSeq and GenBank data is currently available through NCBI Virus. </span></li>
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</ul>
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</li>
|
||
</ul>
|
||
<h5 aria-level="5">Stay up to date</h5>
|
||
<p><span data-contrast="none">Follow us on social </span><a href="https://twitter.com/ncbi"><span data-contrast="none">@NCBI</span></a><span data-contrast="none"> and </span><a href="https://public.govdelivery.com/accounts/USNLMOCPL/subscriber/new?topic_id=USNLMOCPL_52"><span data-contrast="none">join our mailing list</span></a><span data-contrast="none"> to keep up to date with NCBI Virus and other NCBI news. </span><span data-ccp-props='{"134233117":true,"134233118":true}'> </span></p>
|
||
<h5 aria-level="5">Questions?</h5>
|
||
<p><span data-contrast="auto">We appreciate your support of our virus resources. Thank you for your patience as we make this transition. </span><span data-contrast="none">If you have questions or would like to provide feedback, please </span><a href="https://support.nlm.nih.gov/support/create-case/"><span data-contrast="none">write to our help desk</span></a><span data-contrast="none">. </span><span data-ccp-props="{}"> </span></p>
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