83 lines
5.4 KiB
Text
83 lines
5.4 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs5036/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs5036
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#Current Build 156
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#Released October 17, 2022
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#Organism Homo sapiens
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#Position chr17:44261577 (GRCh38.p14)
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#Alleles T>C
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 9 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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Allele Frequency Aggregator Total Global 309836 T=0.970158 C=0.029842 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 265090 T=0.977046 C=0.022954 SAMN10492695
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Allele Frequency Aggregator Other Sub 20294 T=0.96191 C=0.03809 SAMN11605645
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Allele Frequency Aggregator African Sub 10798 T=0.90285 C=0.09715 SAMN10492703
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Allele Frequency Aggregator Asian Sub 6728 T=0.9038 C=0.0962 SAMN10492704
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Allele Frequency Aggregator Latin American 2 Sub 5332 T=0.8839 C=0.1161 SAMN10492700
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Allele Frequency Aggregator Latin American 1 Sub 1250 T=0.9512 C=0.0488 SAMN10492699
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Allele Frequency Aggregator South Asian Sub 344 T=0.965 C=0.035 SAMN10492702
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TopMed Global Study-wide 264690 T=0.941789 C=0.058211 PRJNA400167
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gnomAD - Exomes Global Study-wide 251446 T=0.955394 C=0.044606 PRJNA398795 SAMN07488253
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gnomAD - Exomes European Sub 135372 T=0.981333 C=0.018667 SAMN10181265
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gnomAD - Exomes Asian Sub 49010 T=0.95621 C=0.04379
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gnomAD - Exomes American Sub 34592 T=0.87647 C=0.12353 SAMN07488255
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gnomAD - Exomes African Sub 16254 T=0.89910 C=0.10090 SAMN07488254
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gnomAD - Exomes Ashkenazi Jewish Sub 10080 T=0.95942 C=0.04058 SAMN07488252
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gnomAD - Exomes Other Sub 6138 T=0.9640 C=0.0360 SAMN07488248
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gnomAD - Genomes Global Study-wide 140156 T=0.949984 C=0.050016 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75926 T=0.97939 C=0.02061 SAMN10181265
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gnomAD - Genomes African Sub 41988 T=0.90111 C=0.09889 SAMN07488254
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gnomAD - Genomes American Sub 13636 T=0.93862 C=0.06138 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3322 T=0.9615 C=0.0385 SAMN07488252
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gnomAD - Genomes East Asian Sub 3130 T=0.9278 C=0.0722 SAMN07488251
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gnomAD - Genomes Other Sub 2154 T=0.9526 C=0.0474 SAMN07488248
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ExAC Global Study-wide 121392 T=0.957567 C=0.042433 PRJEB8661 SAMN07490465
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ExAC Europe Sub 73346 T=0.98014 C=0.01986
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ExAC Asian Sub 25156 T=0.95611 C=0.04389
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ExAC American Sub 11576 T=0.86731 C=0.13269
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ExAC African Sub 10406 T=0.90102 C=0.09898
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ExAC Other Sub 908 T=0.974 C=0.026 SAMN07486028
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The PAGE Study Global Study-wide 78696 T=0.90302 C=0.09698 PRJNA168052 SAMN10868975
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The PAGE Study AfricanAmerican Sub 32516 T=0.90617 C=0.09383 SAMN10868721
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The PAGE Study Mexican Sub 10810 T=0.88085 C=0.11915 SAMN10868735
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The PAGE Study Asian Sub 8318 T=0.8530 C=0.1470 SAMN10868722
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The PAGE Study PuertoRican Sub 7918 T=0.9494 C=0.0506 SAMN10868968
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The PAGE Study NativeHawaiian Sub 4530 T=0.8675 C=0.1325 SAMN10868777
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The PAGE Study Cuban Sub 4228 T=0.9491 C=0.0509 SAMN10868733
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The PAGE Study Dominican Sub 3828 T=0.9303 C=0.0697 SAMN10868734
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The PAGE Study CentralAmerican Sub 2450 T=0.9020 C=0.0980 SAMN10868729
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The PAGE Study SouthAmerican Sub 1982 T=0.8678 C=0.1322 SAMN10868969
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The PAGE Study NativeAmerican Sub 1260 T=0.9468 C=0.0532 SAMN10868739
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The PAGE Study SouthAsian Sub 856 T=0.979 C=0.021 SAMN10868970
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14KJPN JAPANESE Study-wide 28258 T=0.81616 C=0.18384 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16760 T=0.82124 C=0.17876 PRJNA678214 SAMN16789458
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1000Genomes_30x Global Study-wide 6404 T=0.9346 C=0.0654 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 T=0.9054 C=0.0946 SAMN07486022
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1000Genomes_30x Europe Sub 1266 T=0.9803 C=0.0197 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 T=0.9700 C=0.0300 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 T=0.9239 C=0.0761 SAMN07486024
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1000Genomes_30x American Sub 980 T=0.898 C=0.102 SAMN07488242
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1000Genomes Global Study-wide 5008 T=0.9361 C=0.0639 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 T=0.9047 C=0.0953 SAMN07486022
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1000Genomes East Asian Sub 1008 T=0.9196 C=0.0804 SAMN07486024
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1000Genomes Europe Sub 1006 T=0.9801 C=0.0199 SAMN07488239
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1000Genomes South Asian Sub 978 T=0.973 C=0.027 SAMN07486027
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1000Genomes American Sub 694 T=0.903 C=0.097 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.9819 C=0.0181 PRJNA489787
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The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.9782 C=0.0218 PRJEB7217
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UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.9825 C=0.0175 PRJEB7218
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KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.8853 C=0.1147 PRJNA589833
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Korean Genome Project KOREAN Study-wide 1832 T=0.8941 C=0.1059 PRJNA609628
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Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.984 C=0.016 PRJEB5829 SAMN13000132
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CNV burdens in cranial meningiomas Global Study-wide 790 T=0.918 C=0.082 PRJEB37584 SAMN15458720
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CNV burdens in cranial meningiomas CRM Sub 790 T=0.918 C=0.082 SAMN15458720
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Northern Sweden ACPOP Study-wide 600 T=0.988 C=0.012 PPRJNA503394 SAMN10359154
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Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 T=0.978 C=0.022 PRJEB8705 SAMN13001620
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FINRISK Finnish from FINRISK project Study-wide 304 T=0.997 C=0.003 PRJEB7895 SAMN13002954
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Qatari Global Study-wide 216 T=0.940 C=0.060 PRJNA288297 SAMN13019808
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SGDP_PRJ Global Study-wide 92 T=0.48 C=0.52 PRJNA586841
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The Danish reference pan genome Danish Study-wide 40 T=0.97 C=0.03 PRJEB7725 SAMN13003120
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Siberian Global Study-wide 4 T=0.5 C=0.5 PRJNA267856 SAMN13113809
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