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<li role="presentation" class="active"><a href="#background" aria-controls="background" role="tab" data-toggle="tab">Background</a></li>
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<li role="presentation"><a href="#nomenclature" aria-controls="nomencalture" role="tab" data-toggle="tab">Nomenclature</a></li>
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<li role="presentation"><a href="#classification" aria-controls="classification" role="tab" data-toggle="tab">Classification</a></li>
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<div role="tabpanel" class="tab-pane active" id="background">
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<h2 id="background">Background information</h2>
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<h3 id="background">Nucleosome structure</h3>
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Nucleosomes are the basic units of chromatin compaction. Nucleosome core particle (NCP) wraps around 147 bp of DNA in ~1.7 left-handed super helical turns around
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an octamer of four types of core hisotnes (H3,
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H4, H2A and H2B — two copies of each) [1,2]. NCPs are further connected by linker DNA strands and a linker histone H1 further interacts with the NCPs and linker DNA to facilitate formation of higher order chromatin structures.
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Nucleosomes play key roles in epigenetic regulation of transcription,
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replication, DNA repair and cell reprogramming.<br><br>
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<video controls="controls" width="400px" height="300px" poster="/research/histonedb/static/browse/video/poster.jpg">
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</video>
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</div>
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<div class="row">
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<div class="col-xs-6">Nucleosome organization diagram (adapted from [3-4]).</div>
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<div class="col-xs-6">Dynamic representation of the nucleosome with linker DNA [4].</div>
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</div>
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<h3 id="background">Histone variants</h3>
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Most eukaryotes have histone isoforms
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for some or all of the histone families (H2A, H2B, H3, H4, H1) [5].
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Classification of histone isoforms is a daunting task. They are usually subdivided into ‘canonical’ replication-dependent histones that are expressed during the S-phase of cell cycle and replication-independent histone ‘variants’,
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constitutively expressed during cell cycle. In animals, genes encoding canonical histones are typically clustered along the chromosome, lack introns, and employ a specific type of regulation at the RNA level with a stem loop structure at the 3’ end instead of polyA tail.
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On the other hand, genes encoding histone variants are usually not clustered, have introns, and their mRNAs are regulated with polyA tails similar to the mRNAs of most genes.
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In plants, canonical histone genes lack introns, but are not clustered and the mRNAs are polyadenylated. Remarkably, more complex multicellular organisms typically have a higher number of histone variants providing a variety of different functions.
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Recent data are accumulating about the roles of diverse histone variants highlighting the functional links between variants and the delicate regulation of organism development.
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<h3 id="background">References</h3>
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<ol>
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<li>Kornberg RD. "Chromatin structure: a repeating unit of histones and DNA." <i>Science</i>, 1974. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=4825889">4825889</a></li>
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<li>Luger K, Mader AW, et al. "Crystal structure of the nucleosome core particle at 2.8 A resolution." <i>Nature</i>, 1997. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=9305837">9305837</a></li>
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<li>Shaytan AK, Landsman D, et al. "Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers." <i>Curr Opin Struct Biol</i>, 2015. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=25731851">25731851</a></li>
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<li>Shaytan AK, Armeev GA, et al. "Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions." <i>J Mol. Biol.</i>, 2015. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=26699921">26699921</a></li>
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<li>Talbert PB, Ahmad K, et al. "A unified phylogeny-based nomenclature for histone variants." <i>Epigenetics Chromatin</i>, 2012. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=22650316">22650316</a></li>
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</ol>
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</div>
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<div role="tabpanel" class="tab-pane" id="contact">
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<h2 id="contact">Contact</h2>
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<div class="container">
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<div class="row">
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<div class="col-xs-12">
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<!-- Place this tag where you want the button to render. -->
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<!-- Place this tag where you want the button to render. -->
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</div>
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</div>
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<div class="row">
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Please, send your question and comments to <a href="mailto:histonedb-help@ncbi.nlm.nih.gov">histonedb-help@ncbi.nlm.nih.gov</a>.
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</div>
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</div>
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</div>
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<div role="tabpanel" class="tab-pane" id="nomenclature">
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<h2 id="nomencalture">Nomenclature</h2>
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This database of histone variant follows the new nomenclature introduced in ref. [1], which may be summarized in the following form: <br /><br />
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[prefix]<font color="red">TYPE</font>.<font color="blue">VARIANT</font><br />
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<ol>
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<li><font color="red">TYPE</font> = Histone type name (H2A, H2B, H3, H4, H1)</li>
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<li><font color="blue">VARIANT</font>:
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<ul>
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<li>Letter: used to denote a structurally distinct monophyletic clade of a histone family (exception is H2A.X).</li>
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<li>Number: used to denote a species-specific variant, not defined by phylogeny but clear orthology.</li>
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</ul>
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</li>
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</ol>
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prefix = used to denote a structurally distinct clade of core histones (e.g.: <b>macro</b>H2A, <b>sub</b>H2B, <b>cen</b>H3).<br />
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<div class="row">
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<div class="col-md-8">
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Example: <font color="red">H2A</font>.<font color="blue">Z</font>
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</div>
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</div>
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<h3 id="background">References</h3>
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<ol>
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<li>Talbert PB, Ahmad K, et al. "A unified phylogeny-based nomenclature for histone variants." <i>Epigenetics Chromatin</i>, 2012. PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=22650316">22650316</a></li>
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</ol>
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</div>
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<div role="tabpanel" class="tab-pane" id="classification">
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<h2 id="nomencalture">Classification</h2>
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The automatic classification algorithms employed in the current database is described below. More details available in ref.[1]. <br><br>
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Curated alignments of histone variants were used to train Hidden Markov Models, utilizing HMMER 3.1b2,
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to create one HMM for each variant. These models were used as a part of automatic extraction and annotation
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pipeline. Namely, all sequences from the nr protein database have been classified by the HMM models
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(variants and canonical) and were added into the HistoneDB 2.0 as “automatically extracted sequences”.
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We assigned a model with a maximum HMMER score to a given sequence. The score was required to exceed
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a certain threshold identified as follows. For any given variant model, we searched the curated sequence
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set and calculated HMMER scores for all curated sequences. We then varied the HMMER score threshold
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in order to distinguish variant sequences from all other sequences with 90% specificity. Specificity
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of retrieval was estimated based on the number of true positives (TPs; sequences correctly predicted by
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their native model) and false positives (FPs; incorrectly predicted sequences) found above each HMMER
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score cutoff. The specificity was calculated as TN/(FP+TN). Then a desired score cutoff value was
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obtained from the interpolated inverse curve of the score cutoffs plotted versus specificity. The
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efficacy of classification based on HMM models depends significantly on whether the respective
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histone variant model is sufficiently divergent and forms a separate clade on the phylogenetic
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tree. For certain variants,
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which emerged repeatedly in the course of evolution, the classification becomes difficult unless a
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characteristic signature is known. In the case of H2A.X, HMM search algorithm was supplemented by the
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pattern matching, since this variant is characterized by the presence of ‘SQ(E/D)Φ’ motif as described
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above. Any sequence that was classified as canonical H2A by HMMER-based algorithm was reclassified as
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H2A.X if it had this motif at its C-terminus. The described above classification algorithm can be also
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applied to classify any sequence of interest via "Analyze Your Sequence" tab.
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<h3 id="background">References</h3>
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<ol>
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<li>
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Draizen EJ, Shaytan AK, Marino-Ramirez L, Talbert PB, Landsman D, Panchenko AR. "HistoneDB 2.0 - with Variants: an integrated resource to explore histones and histone variants." <i>Database</i>. In Preparation.
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</li>
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</ol>
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</div>
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<div role="tabpanel" class="tab-pane" id="download">
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<div class="container">
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<div class="row">
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<h2>Download</h2>
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</div>
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<div class="row">
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<h3>How can I download all sequences?</h3>
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</div>
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<div class="row">
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List of all histone sequences referenced by GIs can be downloaded <a href="/research/histonedb/static/browse/dumps/seqs.txt">here.</a><br>
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List of all HMM scores for the sequences against matching HMM models can be downloaded <a href="/research/histonedb/static/browse/dumps/scores.txt">here.</a><br>
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</div>
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</div>
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</div>
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<div role="tabpanel" class="tab-pane" id="cite">
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<h2 id="contact">How to cite</h2>
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Please cite the database as:<br>
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E.J. Draizen, A.K. Shaytan, L. Marino-Ramirez, P.B. Talbert, D. Landsman, A.R. Panchenko. "HistoneDB 2.0 - with Variants: an integrated resource to explore histones and histone variants." <i>Database</i>. In Preparation.
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</div>
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</div>
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</div>
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</div>
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<hr>
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<footer>
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<a href="http://ncbi.nlm.nih.gov"><img src="/research/histonedb/static/browse/img/ncbi_nlm.png" width="10%" class="pull-left"/ ></a>
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<a href="http://www.nih.gov"><img src="/research/histonedb/static/browse/img/nih.png" width="10%" class="pull-right"/ ></a>
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</footer>
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<button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">×</span></button>
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<h4 class="modal-title" id="advanced_filter_title">Advanced Search</h4>
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<li role="presentation" class="active"><a href="#filter_Basic" aria-controls="filter_Basic" role="tab" data-toggle="tab"> Basic</a></li>
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<li role="presentation"><a href="#filter_Advanced" aria-controls="filter_Advanced" role="tab" data-toggle="tab"> Advanced</a></li>
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</ul>
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<div class="form-group">
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<div class="row">
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<div class="col-lg-2">
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<div class="pull-right" id="id_hist_type_label">
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<label for="id_hist_type">Histone:</label>
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</div>
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</div>
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<div class="col-lg-10">
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<div class="input-group">
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<div class="input-group-btn"><input type="hidden" name="id_hist_type" id="id_hist_type" value=""><button type="button" id="id_hist_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">---- <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_hist_type_drop_down"><li><a href="#" id="id_hist_type_drop_down_default">----</a></li>
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<li><a href="#" id="id_hist_type_drop_down_0">H1</a></li>
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<li><a href="#" id="id_hist_type_drop_down_1">H2A</a></li>
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<li><a href="#" id="id_hist_type_drop_down_2">H2B</a></li>
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<li><a href="#" id="id_hist_type_drop_down_3">H3</a></li>
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<li><a href="#" id="id_hist_type_drop_down_4">H4</a></li>
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<li><a href="#" id="id_hist_type_drop_down_5">Unknown</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_hist_type_drop_down_default').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val(); });$('#id_hist_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });$('#id_hist_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });$('#id_hist_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });$('#id_hist_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });$('#id_hist_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });$('#id_hist_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_hist_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_hist_type').val($(this).html()); });</script>
|
||
|
||
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_variant_label">
|
||
<label for="id_variant">Variant:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_variant_search_type" id="id_variant_search_type" value="is"><button type="button" id="id_variant_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_variant_search_type_drop_down"><li><a href="#" id="id_variant_search_type_drop_down_0">is</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_1">is (case-insesitive)</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_2">contains</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_3">contains (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_4">starts with</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_5">starts with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_6">ends with</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_7">ends with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_8">in (comma separated)</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_9">regex</a></li>
|
||
<li><a href="#" id="id_variant_search_type_drop_down_10">regex (case-insensitive)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_variant_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });$('#id_variant_search_type_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant_search_type').val($(this).html()); });</script><input type="text" class="form-control" name="id_variant" id="id_variant" value=""/><div class="input-group-btn"><button type="button" id="id_variant_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%"> <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_variant_drop_down"><li><a href="#" id="id_variant_drop_down_default"></a></li>
|
||
<li><a href="#" id="id_variant_drop_down_0">H1.0</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_1">H1.10</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_2">OO_H1.8</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_3">TS_H1.6</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_4">TS_H1.7</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_5">TS_H1.9</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_6">generic_H1</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_7">scH1</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_8">H2A.1</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_9">H2A.B</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_10">H2A.L</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_11">H2A.P</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_12">H2A.W</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_13">H2A.X</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_14">H2A.Z</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_15">canonical_H2A</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_16">macroH2A</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_17">H2B.1</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_18">H2B.W</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_19">H2B.Z</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_20">canonical_H2B</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_21">sperm_H2B</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_22">subH2B</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_23">H3.3</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_24">H3.5</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_25">H3.Y</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_26">TS_H3.4</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_27">canonical_H3</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_28">cenH3</a></li>
|
||
<li><a href="#" id="id_variant_drop_down_29">canonical_H4</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_variant_drop_down_default').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_variant').val(); });$('#id_variant_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_11').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_12').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_13').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_14').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_15').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_16').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_17').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_18').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_19').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_20').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_21').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_22').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_23').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_24').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_25').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_26').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_27').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_28').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });$('#id_variant_drop_down_29').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_variant').val($(this).html()); });</script>
|
||
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_variant_help">Structurally distinct monophyletic clade of a histone family. Enter new or old variant names. Supports new dot (.) syntax.</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_taxonomy_label">
|
||
<label for="id_taxonomy">Taxonomy:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_taxonomy_search_type" id="id_taxonomy_search_type" value="is"><button type="button" id="id_taxonomy_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_taxonomy_search_type_drop_down"><li><a href="#" id="id_taxonomy_search_type_drop_down_0">is</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_1">is (case-insesitive)</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_2">contains</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_3">contains (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_4">starts with</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_5">starts with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_6">ends with</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_7">ends with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_8">in (comma separated)</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_9">regex</a></li>
|
||
<li><a href="#" id="id_taxonomy_search_type_drop_down_10">regex (case-insensitive)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_taxonomy_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });$('#id_taxonomy_search_type_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_taxonomy_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_taxonomy_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_taxonomy" id="id_taxonomy" value=""/>
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_taxonomy_help">Supports all NCBI Taxonomy names and IDs</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
</div>
|
||
|
||
<div role="tabpanel" class="tab-pane " id="filter_Advanced" style="margin-top:5px;">
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_id_label">
|
||
<label for="id_id">Accession:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_id_search_type" id="id_id_search_type" value="is"><button type="button" id="id_id_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_id_search_type_drop_down"><li><a href="#" id="id_id_search_type_drop_down_0">is</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_1">is (case-insesitive)</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_2">contains</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_3">contains (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_4">starts with</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_5">starts with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_6">ends with</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_7">ends with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_8">in (comma separated)</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_9">regex</a></li>
|
||
<li><a href="#" id="id_id_search_type_drop_down_10">regex (case-insensitive)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_id_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });$('#id_id_search_type_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_id_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_id_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_id" id="id_id" value=""/>
|
||
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_header_label">
|
||
<label for="id_header">Header:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_header_search_type" id="id_header_search_type" value="is"><button type="button" id="id_header_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_header_search_type_drop_down"><li><a href="#" id="id_header_search_type_drop_down_0">is</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_1">is (case-insesitive)</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_2">contains</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_3">contains (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_4">starts with</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_5">starts with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_6">ends with</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_7">ends with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_8">in (comma separated)</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_9">regex</a></li>
|
||
<li><a href="#" id="id_header_search_type_drop_down_10">regex (case-insensitive)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_header_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });$('#id_header_search_type_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_header_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_header_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_header" id="id_header" value=""/>
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_header_help">Current Genbank Description</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_sequence_label">
|
||
<label for="id_sequence">Sequence:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_sequence_search_type" id="id_sequence_search_type" value="is"><button type="button" id="id_sequence_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_sequence_search_type_drop_down"><li><a href="#" id="id_sequence_search_type_drop_down_0">is</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_1">is (case-insesitive)</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_2">contains</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_3">contains (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_4">starts with</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_5">starts with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_6">ends with</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_7">ends with (case-insensitive)</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_8">in (comma separated)</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_9">regex</a></li>
|
||
<li><a href="#" id="id_sequence_search_type_drop_down_10">regex (case-insensitive)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_sequence_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_7').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_8').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_9').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });$('#id_sequence_search_type_drop_down_10').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_sequence_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_sequence_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_sequence" id="id_sequence" value=""/>
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_sequence_help">Search for sequence motifs</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_score_label">
|
||
<label for="id_score">Score:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_score_search_type" id="id_score_search_type" value="is"><button type="button" id="id_score_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_score_search_type_drop_down"><li><a href="#" id="id_score_search_type_drop_down_0">></a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_1">>=</a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_2">is</a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_3"><</a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_4"><=</a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_5">range (dash separated)</a></li>
|
||
<li><a href="#" id="id_score_search_type_drop_down_6">in (comma separated)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_score_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });$('#id_score_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_score_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_score_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_score" id="id_score" value=""/>
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_score_help">Bitscore from HMM used for classification</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_evalue_label">
|
||
<label for="id_evalue">E-value:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
|
||
<div class="input-group-btn"><input type="hidden" name="id_evalue_search_type" id="id_evalue_search_type" value="is"><button type="button" id="id_evalue_search_type_drop_down_button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-expanded="false" width="100%">is <span class="caret"></span></button><ul class="dropdown-menu" role="menu" id="id_evalue_search_type_drop_down"><li><a href="#" id="id_evalue_search_type_drop_down_0">></a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_1">>=</a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_2">is</a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_3"><</a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_4"><=</a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_5">range (dash separated)</a></li>
|
||
<li><a href="#" id="id_evalue_search_type_drop_down_6">in (comma separated)</a></li>
|
||
</ul></div><script type="text/javascript">$('#id_evalue_search_type_drop_down_0').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_1').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_2').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_3').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_4').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_5').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });$('#id_evalue_search_type_drop_down_6').on('click', function(){ if($(this).parent().hasClass('disabled')){ return; }$('#id_evalue_search_type_drop_down_button').html($(this).html() + ' <span class="caret"></span>'); $('#id_evalue_search_type').val($(this).html()); });</script>
|
||
|
||
<input type="text" class="form-control" name="id_evalue" id="id_evalue" value=""/>
|
||
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_refseq_label">
|
||
<label for="id_refseq">Refseq:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
<input type="checkbox" name="id_refseq" id="id_refseq" />
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_refseq_help">Only show sequences from RefSeq</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="form-group">
|
||
<div class="row">
|
||
<div class="col-lg-2">
|
||
<div class="pull-right" id="id_unique_label">
|
||
<label for="id_unique">Unique:</label>
|
||
</div>
|
||
</div>
|
||
<div class="col-lg-10">
|
||
<div class="input-group">
|
||
|
||
<input type="checkbox" name="id_unique" id="id_unique" />
|
||
|
||
</div>
|
||
|
||
<div class="help-text" id="id_unique_help">Only show unique sequences where no organism has multiple sequences that are identical</div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
</div>
|
||
|
||
</div>
|
||
<input type="hidden" name="reset" id="reset_previous_searches" value="true" />
|
||
</form>
|
||
</div>
|
||
<div class="modal-footer">
|
||
<button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
|
||
<button type="button" class="btn btn-primary" id="advanced_search_button" data-dismiss="modal">Search</button>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</body>
|
||
</html>
|