444 lines
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HTML
444 lines
24 KiB
HTML
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<html lang="en">
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<head>
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<!--***********************change issue date below**********************-->
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<title>Technical Notes. NLM Technical Bulletin. Jul-Aug 2002</title>
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<meta name="DC.Subject.IssueNum" content="327" />
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<meta name="DC.Subject.IssueCover" content="/pubs/techbull/ja02/ja02_issue_cover.html" />
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<meta name="DC.Subject.Keyword" content="Author" />
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<meta name="DC.Subject.Keyword" content="Cancer" />
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<meta name="DC.Subject.Keyword" content="ChemIDplus" />
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<meta name="DC.Subject.Keyword" content="Clinical Alert" />
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<meta name="DC.Subject.Keyword" content="ClinicalTrials.gov" />
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<meta name="DC.Subject.Keyword" content="Display Formats" />
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<meta name="DC.Subject.Keyword" content="E-mail" />
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<meta name="DC.Subject.Keyword" content="Entrez" />
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<meta name="DC.Subject.Keyword" content="E-utilities" />
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<meta name="DC.Subject.Keyword" content="Frequently Asked Questions" />
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<meta name="DC.Subject.Keyword" content="Full Text" />
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<meta name="DC.Subject.Keyword" content="LinkOut for Libraries" />
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<meta name="DC.Subject.Keyword" content="Medical Library Association" />
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<meta name="DC.Subject.Keyword" content="Medical Subject Headings" />
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<meta name="DC.Subject.Keyword" content="MEDLINE" />
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<meta name="DC.Subject.Keyword" content="MedlinePlus" />
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<meta name="DC.Subject.Keyword" content="National Center for Biotechnology Information" />
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<meta name="DC.Subject.Keyword" content="National Institutes of Health" />
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<meta name="DC.Subject.Keyword" content="National Training Center and Clearinghouse" />
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<meta name="DC.Subject.Keyword" content="NLM Classification" />
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<meta name="DC.Subject.Keyword" content="NLM Gateway" />
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<meta name="DC.Subject.Keyword" content="Profiles in Science" />
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<meta name="DC.Subject.Keyword" content="PubMed Unique Identifier" />
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<meta name="DC.Subject.Keyword" content="PubMed" />
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<meta name="DC.Subject.Keyword" content="Release" />
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<meta name="DC.Subject.Keyword" content="Search Engine" />
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<meta name="DC.Subject.Keyword" content="Spanish" />
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<meta name="DC.Subject.Keyword" content="TOXNET" />
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<meta name="DC.Subject.Keyword" content="Training" />
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<meta name="DC.Subject.Keyword" content="UMLS MetamorphoSys" />
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<meta name="DC.Subject.Keyword" content="UMLS Metathesaurus" />
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<meta name="DC.Subject.Keyword" content="UMLS Semantic Network" />
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<meta name="DC.Subject.Keyword" content="UMLS Specialist Lexicon" />
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<meta name="DC.Subject.Keyword" content="Unique Identifier" />
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<meta name="DC.Subject.Keyword" content="Update" />
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</head>
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<body link="#476B47" alink="#476B47" vlink="#476B47" text="#000000" bgcolor="ffffff"><noscript><iframe src="//www.googletagmanager.com/ns.html?id=GTM-MT6MLL" height="0" width="0" style="display:none;visibility:hidden" title="googletagmanager"></iframe></noscript><script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start': new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='//www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-MT6MLL');</script>
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<a id="skipnav" name="skipnav"></a>
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<table border="0" width="550">
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<tr><td width="550" align="center" colspan="3">
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<tr><td width="30"> </td><td width="470">
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<!--****************************insert first note's title below****************************************-->
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<h3><a name = "classification">New Table G Classification Numbers Added</a></h3>
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<p><table border="1" width="200" cellpadding="5" align="right">
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<tr><td>
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<center><font size="4" face="helvetica, arial"><strong>Technical Notes</strong></font></center><br />
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<font size="2" face="helvetica, arial">
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<a href = "#classification" class="TEXT">New Table G Classification Numbers Added</a><br /><br />
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<a href = "#alert" class="TEXT">New Clinical Alert Issued</a><br /><br />
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<a href = "#eutilities" class="TEXT">NCBI Announces New Entrez Programming Utilities</a><br /><br />
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<a href = "#umls" class="TEXT">UMLS<sup><font size = -2>®</font></sup> Moves to Quarterly Releases</a><br /><br />
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<a href = "#pubmedstats" class="TEXT">PubMed<sup><font size=-2>®</font></sup> Search Statistics</a><br /><br />
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<a href = "#engine" class="TEXT">New Search Engine on NLM Web Site</a><br /><br />
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<a href = "#uilist" class="TEXT">UI List - New Display Format in PubMed</a><br /><br />
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<a href = "#train" class="TEXT">August 2002 PubMed, NLM Gateway, and ClinicalTrials.gov Training Manuals Now Available</a><br /><br />
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<a href = "#pubmed" class="TEXT">URLF and URLS Data to be Deleted in PubMed</a><br /><br />
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<a href = "#umlsclass" class="TEXT">UMLS Basics Class Offered</a><br /><br />
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<!--
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<a href = "#lsiou" class="TEXT"><em>List of Serials Indexed in Index Medicius (LJI)</em> - 2002 - Now Available</a><br /><br />
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-->
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</font></td></tr>
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</table>
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<!--***********************end table of contents******************************************************-->
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<font size="2"><strong>July 12, 2002</strong> [posted]</font>
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<p>
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Note the following additions to Table G of the <em>NLM Classification</em>, 5th edition 1994, rev.
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1999, since the publication of this tool in September 2000:
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</p>
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<dl>
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<dt>In Section IV. Americas, add:
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<dd> DA9 -- Aruba </dd>
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<dt>In Section VIII. Middle East and Asia, add:
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<dd> JU5 -- United Arab Emirates </dd>
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<dt>In Section X. Islands of the Pacific and Indian Oceans, add:
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<dd> LE1 -- East Timor</dd>
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</dl>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "alert">New Clinical Alert Issued</a></h3>
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<font size="2"><strong>July 12, 2002</strong> [posted]</font>
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<p>
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The National Heart, Lung, and Blood Institute (NHLBI) has issued a new Clinical Alert:
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</p>
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<ul>
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<li><a href="/databases/alerts/estrogen_progestin.html">NHLBI Stops Trial of Estrogen Plus Progestin Due to Increased Breast Cancer Risk, Lack of Overall Benefit</a> </li>
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</ul>
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<p>
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The NHLBI of the National Institutes of Health (NIH) has stopped early a major clinical trial of the risks and benefits of combined estrogen and progestin in healthy
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menopausal women due to an increased risk of invasive breast cancer. The large multi-center trial, a
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component of the Women's Health Initiative (WHI), also found increases in coronary heart disease, stroke,
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and pulmonary embolism in study participants on estrogen plus progestin compared to women taking
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placebo pills. There were noteworthy benefits of estrogen plus progestin, including fewer cases of hip
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fractures and colon cancer, but on balance the harm was greater than the benefit. The study, which was
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scheduled to run until 2005, was stopped after an average follow-up of 5.2 years.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "#eutilities">NCBI Announces New Entrez Programming Utilities</a></h3>
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<font size="2"><strong>July 18, 2002</strong> [posted]</font>
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<p>
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The National Center for Biotechnology Information (NCBI) has developed a new set
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of <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query/static/eutils_help.html"> Entrez Programming Utilities</a> (Entrez Utilities).
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The new Entrez Utilities consolidate the original utilities currently in use. A link to the new Entrez Utilities can be found on PubMed's sidebar, labelled "E-Utilities."
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</p>
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<p>
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Utility users should begin using the new Entrez Utilities now and revise any existing URLs that were created using
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the original utilities (e.g., PmFetch, PmNeighbor). URLs created using the original utilities will continue to work
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until December 2002 by which time your transition to the new utilities should be complete. If you have not done so
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already, please subscribe to the Entrez Utilities Announcement Mailing List for announcements regarding the Entrez Utilities. To subscribe send
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an email message with subscribe in the Subject area to: <a href="mailto:utilities-announce-request@ncbi.nlm.nih.gov">utilities-announce-request@ncbi.nlm.nih.gov</a> .
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</p>
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<p>
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<strong>Reminder: Linking to PubMed<sup><font size=-2>®</font></sup></strong><br />
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Manually constructed URLs created for the old PubMed system (i.e., http://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?db=m ...) will not work after
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December 2002. All old URLs must be changed to follow the specifications outlined in the <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query/static/linking.html">Linking
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to PubMed and other Entrez databases</a> documentation.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "umls">UMLS<sup><font size = -2>®</font></sup> Moves to Quarterly Releases</a></h3>
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<font size="2"><strong>August 05, 2002</strong> [posted]</font>
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<p>
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New releases to the <a href="/research/umls/">UMLS</a> (Unified Medical Language System) have been
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issued annually since 1990. Beginning in 2002, the UMLS is released
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quarterly. The January 2002 release, 2002AA, contained 776,940 concepts and 2.1 million terms;
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the May 2002 release, 2002AB, contained 871,584 concepts and 2.1 million
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terms. There are now over 95 vocabulary sources contained in the UMLS
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Metathesaurus. There will be two more releases in 2002, one in August and the
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other in October. PubMed<sup><font size = -2>®</font></sup>, the NLM Gateway, and ClinicalTrials.gov utilize
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the UMLS to enhance searching; all are updated following each UMLS release.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "pubmedstats">PubMed Search Statistics</a></h3>
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<font size="2"><strong>August 05, 2002</strong> [posted]</font>
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<p>
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In response to user requests for PubMed statistics the National Center for Biotechnology Information (NCBI) has released a <a href="http://www.ncbi.nlm.nih.gov/About/tools/restable_stat_pubmed.html">PubMed Searches</a> graph. This new graph is available from the
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Overview on the <a href="http://www.pubmed.gov">PubMed sidebar</a> as well as from the Databases and
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Tools section of the <a href="http://www.ncbi.nlm.nih.gov/About/index.html">About NCBI</a> web page.
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The new graph provides statistical information for PubMed searches
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from January 1997 to the present.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "engine">New Search Engine on NLM Web Site</a></h3>
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<font size="2"><strong>August 08, 2002</strong> [posted]</font>
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<p>
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On Thursday, July 25, the National Library of Medicine released a new search engine on its main
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<a href="http://www.nlm.nih.gov">Web site</a>. The new search engine is from a
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California-based company RecomMind, who offers a concept-based information retrieval system.
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RecomMind not only searches keywords, but concepts and topics
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are also automatically extracted from data, allowing related concepts to be retrieved in the same search.
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</p>
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<p>
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Search results are listed and navigated via a series of folders: National Library of Medicine, Health
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Information - MedlinePlus, Profiles in Science, and Exhibits. This structure allows users to choose a
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concept and to move conveniently among the folders. The Library plans to expand implementation of the new
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search engine site by site, starting with the soon-to-be-released Spanish MedlinePlus and MedlinePlus.
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</p>
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<p>
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To find out more about how the search engine works, see the Search FAQ at <a href="http://www.nlm.nih.gov/searchfaq.html">http://www.nlm.nih.gov/searchfaq.html</a>.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "uilist">UI List - New Display Format in PubMed </a></h3>
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<font size="2"><strong>August 08, 2002</strong> [posted]</font>
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<p>
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PubMed's Display pull-down menu has a new option, UI List. This format displays the same information
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as the Brief format, i.e., Authors, the first 30 characters of the Title, and the PMID (PubMed Unique Identifier).
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However, if you use the Save or Text function with UI List you will get a list of only the PMIDs.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "train">August 2002 PubMed, NLM Gateway, and ClinicalTrials.gov Training Manuals Now Available</a></h3>
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<font size="2"><strong>August 09, 2002</strong> [posted]</font>
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<p>
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The August 2002 editions of the training manuals are now available for
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downloading from the NLM Web site: <a href="http://www.nlm.nih.gov/pubs/web_based.html">PubMed, NLM Gateway,
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ClinicalTrials.gov and TOXNET Training Manuals</a>. The workbooks were
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updated to reflect changes to PubMed, the NLM Gateway, and
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ClinicalTrials.gov since October 2001. The manuals are available for
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downloading in Portable Document Format (PDF) and Microsoft (MS) Word
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formats. They are broken down into sections so you can choose the areas of
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interest to you. These materials correspond to the NLM's National Training
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Center and Clearinghouse training courses described at
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<a href=" http://nnlm.gov/mar/online/description.html">http://nnlm.gov/mar/online/description.html</a>.
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</p>
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<p>
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Lecture guides used in training on Toxicology and Environmental Health Web
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Resources (i.e., TOXNET and ChemIDplus) are also available from this Web
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site.
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</p>
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<p>
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These workbooks are not copyrighted. Feel free to use any part of the
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workbooks - you may customize parts for training programs, demonstrations,
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or workshops you conduct.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "pubmed">URLF and URLS Data to be Deleted in PubMed</a></h3>
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<font size="2"><strong>August 13, 2002</strong> [posted]</font>
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<p>
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The URLF and URLS fields have been removed from the MEDLINE format in PubMed and will be removed from the XML format at the end of the year.
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These fields held URLs for links to full text and summaries at providers' websites; however, the data were often incomplete and not updated.
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The <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query/static/eutils_help.html">Entrez Utility</a>, ELink, can be used to obtain LinkOut URLs.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<h3><a name = "umlsclass">UMLS Basics Class Offered</a></h3>
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<font size="2"><strong>August 22, 2002</strong> [posted]</font>
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<p>
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NLM announces that the one-day "UMLS Basics: What Is This Thing Called the UMLS And Why Do I Care?" course is now being offered at NLM on Wednesday,
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September 25, 2002, and again on Thursday, October 17, 2002. There are no prerequisites for the course but students should be familiar with MeSH and controlled
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vocabularies (especially conventions and hierarchical arrangements). We expect to be notified soon of the approved Medical Library Association CEU credits for this course.
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Register with the <a href="http://nnlm.gov/mar/online/description.html#umls">National Training Center and Clearinghouse</a>.
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</p>
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<p>
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Brief class description: This 8-hour, hands-on course introduces NLM's UMLS: what it is and how it is used. Students gain an understanding of the three
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main components, or Knowledge Sources: the Metathesaurus, the Semantic Network, and the SPECIALIST Lexicon--what these are and how these and related
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tools are used in a variety of biomedical applications and research. A broad overview of the 95-plus source vocabularies contained in the Metathesaurus is provided.
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Criteria for assessing the usefulness of specific controlled vocabularies for clinical, research, and educational purposes are discussed. The online UMLS Knowledge Source
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Server (UMLSKS) is used to access UMLS data throughout the class. Hands-on exercises allow students to practice basic and advanced searching skills. Some experience
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is provided with software called MetamorphoSys and how it can be used to produce customized local versions of the Metathesaurus useful for particular applications.
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The intended audience is medical librarians and other information specialists who desire an introduction to the UMLS and an understanding of the issues and practical
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considerations involved in selecting and using appropriate controlled vocabularies for a range of biomedical applications.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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<!--
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<h3><a name = "lsiou"><em>List of Serials Indexed in Index Medicius (LJI)</em> - 2002 - Now Available</a></h3>
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<font size="2"><strong>August xx, 2002</strong> [posted]</font>
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<p>
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The <em>List of Serials Indexed in Index Medicus</em> - 2002 - is now available and can be downloaded in Adobe Acrobat
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PDF format (782 KB) from <a href="ftp://nlmpubs.nlm.nih.gov/online/journals/lsiweb.pdf">ftp://nlmpubs.nlm.nih.gov/online/journals/lsiweb.pdf</a>.
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PDF documents require the use of Adobe<sup>®</sup> Acrobat<sup>®</sup> Reader, which can be downloaded from
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Adobe's Web site at no charge.
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</p>
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<p>
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The 3,799 journals being indexed for <em>Index Medicus</em> as of April 2002, are listed in four sections: (1)
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Alphabetic listing by abbreviated title, followed by full title; (2) Alphabetic listing by full title, followed by
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abbreviated title; (3) Alphabetic listing subject field; and, (4) Alphabetic listing by country of publication.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/> <a href = "/pubs/techbull/ja02/ja02_technote.html">top of page</a> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" alt= "black line separating technical notes" width="50" height="1"/></center><br /><br />
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</td><td width="30"> </td></tr>
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</table>
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