283 lines
11 KiB
HTML
283 lines
11 KiB
HTML
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head>
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<title>Citing and linking - GEO - NCBI</title>
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<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
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<meta name="keywords" content="NCBI, national institutes of health, nih, database, archive, central, bioinformatics, biomedicine, geo, gene, expression, omnibus, chips, microarrays, oligonucleotide, array, sage, CGH" />
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<meta name="description" content="Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays." />
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<meta name="ncbi_page" content="Citing and linking" />
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<body id="info" class="linking">
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<div id="all">
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<div id="header">
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<img src="/geo/img/ncbi_logo.gif" alt="NCBI Logo" />
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<a href="/geo/"><img src="/geo/img/geo_main.gif" alt="GEO Logo" /></a>
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<ul id="geo_nav_bar">
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<li><a href="#">GEO Publications</a>
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<ul class="sublist">
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<li><a href="/geo/info/GEOHandoutFinal.pdf">Handout</a></li>
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<li><a href="/pmc/articles/PMC10767856/">NAR 2024 (latest)</a></li>
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<li><a href="/pmc/articles/PMC99122/">NAR 2002 (original)</a></li>
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<li><a href="/pmc/?term=10767856,4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">All publications</a></li>
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</ul>
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</li>
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<li><a href="/geo/info/faq.html">FAQ</a></li>
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<li><a href="/geo/info/MIAME.html" title="Minimum Information About a Microarray Experiment">MIAME</a></li>
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<li><a href="mailto:geo@ncbi.nlm.nih.gov">Email GEO</a></li>
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<div id="crumbs_login_bar"><a title="NCBI home page" href="/">NCBI</a> »
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<a id="curr_page" title="GEO home page" href="/geo/">GEO</a> »
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<a title="GEO documentation guide" href="/geo/info/">Info</a> »
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<span>Citing and linking</span><span id="login_status"><a href="/geo/submitter/" title="Click here to login. You need to do this only if you want to edit the contact information, submit data, see your unreleased data, or work with data already submitted by you. You do not need to login if you are here just to browse through public holdings">Login</a></span></div>
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<div id="content">
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<h1 title="Citing and linking">Citing and linking to the GEO database</h1>
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<h2>Citing GEO <span class="toggle">Expand all</span></h2>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Citing the GEO database</a></h4>
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<div>
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<div class="header">Original paper:</div>
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<p class="citation">
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<span class="authors">Edgar R, Domrachev M, Lash AE.</span><br />
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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository<br />
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<a href="http://nar.oupjournals.org/cgi/content/full/30/1/207?ijkey=oxMPOWseARs7o&keytype=ref&siteid=nar">
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Nucleic Acids Res. 2002 Jan 1;30(1):207-10
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</a>
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</p>
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<div class="header">Latest paper:</div>
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<p class="citation">
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<span class="authors">Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA,
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Phillippy KH, Sherman PM, Holko M, Yefanov A, Lee H, Zhang N, Robertson CL, Serova N, Davis S, Soboleva A.</span><br />
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NCBI GEO: archive for functional genomics data sets--update.<br />
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<a href="http://nar.oxfordjournals.org/content/41/D1/D991.full">
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Nucleic Acids Res. 2013 Jan;41(Database issue):D991-5.
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</a>
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</p>
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<p>
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<a href="/pmc/?term=4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">
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More GEO publications »
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</a>
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</p>
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</div>
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</div>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Citing your GEO submission</a></h4>
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<div>
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<p class="citation">
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"The data discussed in this publication have been deposited in NCBI's Gene
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Expression Omnibus (Edgar <i>et al</i>., 2002) and are
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accessible through GEO Series accession number GSExxx (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSExxx)."
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</p>
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<p>
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We strongly recommend that submitters cite their <u>Series</u> accession number (<u>GSE</u>xxx)
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because that record summarizes the experiment and includes links to all other relevant data.
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</p>
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</div>
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</div>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Citing data you find in GEO</a></h4>
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<div>
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<p>
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In addition to citing one of the GEO database papers listed above for general use of GEO, if applicable,
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you should cite the original paper and the accession number used to identify the experiment(s) in GEO.
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That way the original generators of the data sets will get credit and allow readers to locate the source.
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The original paper (if available) is listed under the 'Citation' section of the Series and DataSet records.
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</p>
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<p>Examples:</p>
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<ul class="citation">
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<li>
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"Smith <i>et al</i>., 2006, recently performed microarray experiments investigating effect of
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compound X on neurons (data accessible at NCBI GEO database (Edgar <i>et al</i>., 2002), accession GSExxx)."
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</li>
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<li>
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"In March 2008, a search of the GEO Profiles database (Barrett <i>et al</i>., 2006) revealed that Gene X
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is upregulated in response to compound Y (GEO accession GDSxxx; Smith <i>et al</i>., 2006)."
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</li>
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</ul>
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<p>
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Also, please see <a href="/geo/info/disclaimer.html">Disclaimer</a>.
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</p>
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</div>
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</div>
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<h2>Linking to GEO <span class="toggle">Expand all</span></h2>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Linking to GEO accessions</a></h4>
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<div>
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<p>
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A specific GEO Platform (GPLxxx), Sample (GSMxxx), or Series (GSExxx) record may be linked as follows:
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</p>
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<ul class="link-list">
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE<b>xxx</b>
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</span>
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</li>
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL<b>xxx</b>
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</span>
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</li>
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM<b>xxx</b>
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</span>
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</li>
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</ul>
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<p>
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where <b>xxx</b> is the numerical part of the accession.
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</p>
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<p>
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We recommend linking to the Series object because it summarizes the
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experiment and includes links to all other relevant accessions.
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</p>
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<p>
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<i>Example:</i>
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</p>
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<ul class="link-list">
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<li>
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<a href="/geo/query/acc.cgi?acc=GSE6364">
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6364
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</a>
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</li>
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</ul>
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</div>
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</div>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Linking to GEO DataSet records</a></h4>
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<div>
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<p>
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A specific DataSet (GDSxxx) record may be linked as follows:
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</p>
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<ul class="link-list">
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS<b>xxx</b>
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</span>
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</li>
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</ul>
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<p>
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where <b>xxx</b> is the numerical part of the accession.
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</p>
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<p>
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Example:
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</p>
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<ul class="link-list">
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<li>
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<a href="/sites/GDSbrowser?acc=GDS2737">
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https://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS2737
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</a>
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</li>
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</ul>
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</div>
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</div>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Linking to Entrez GEO Profiles</a></h4>
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<div>
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<p>
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Specific profile(s) can be linked using a query term as follows:
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</p>
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<ul class="link-list">
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/geoprofiles?term="query term"
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</span>
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</li>
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</ul>
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<p>
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Examples:
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</p>
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<ul class="link-list">
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<li>
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<a href="/geoprofiles?term=GDS621+AND+L13606_at">
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https://www.ncbi.nlm.nih.gov/geoprofiles?term=GDS621+AND+L13606_at
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</a>
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</li>
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<li>
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<a href="/geoprofiles?term=dab2[gene+symbol]+AND+human[organism]+AND+dystrophy">
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https://www.ncbi.nlm.nih.gov/geoprofiles?term=dab2[gene+symbol]+AND+human[organism]+AND+dystrophy
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</a>
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</li>
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</ul>
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</div>
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</div>
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<div class="jig-ncbiaccordion">
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<h4><a href="#">Linking to Entrez GEO DataSets</a></h4>
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<div>
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<p>
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Specific DataSet(s) can be linked using a query term as follows:
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</p>
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<ul class="link-list">
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<li>
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<span>
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https://www.ncbi.nlm.nih.gov/gds?term="query term"
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</span>
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</li>
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</ul>
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<p>
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Examples:
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</p>
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<ul class="link-list">
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<li>
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<a href="/gds?term=GDS181+AND+gds[entry+type]">
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https://www.ncbi.nlm.nih.gov/gds?term=GDS181+AND+gds[entry+type]
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</a>
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</li>
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<li>
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<a href="/gds?term=Saccharomyces+cerevisiae[organism]+AND+stress">
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https://www.ncbi.nlm.nih.gov/gds?term=Saccharomyces+cerevisiae[organism]+AND+stress
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</a>
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</li>
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</ul>
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</div>
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</div>
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</div>
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</div>
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<div id="last_mod">
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Last modified: July 16, 2024</div>
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<div id="footer">
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<span class="helpbar">|<a href="https://www.nlm.nih.gov"> NLM </a>|<a href="https://www.nih.gov"> NIH </a>|<a href="mailto:geo@ncbi.nlm.nih.gov"> Email GEO </a>|<a href="/geo/info/disclaimer.html"> Disclaimer </a>|<a href="https://www.nlm.nih.gov/accessibility.html"> Accessibility </a>|<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html"> HHS Vulnerability Disclosure </a>|
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