1920 lines
197 KiB
HTML
1920 lines
197 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||
<head>
|
||
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
||
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
|
||
<meta name="generator" content="Doxygen 1.9.0"/>
|
||
<meta name="viewport" content="width=device-width, initial-scale=1"/>
|
||
<title>NCBI C++ ToolKit: CGC_Assembly Class Reference</title>
|
||
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
||
<script type="text/javascript" src="jquery.js"></script>
|
||
<script type="text/javascript" src="dynsections.js"></script>
|
||
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
||
<script type="text/javascript">
|
||
jQuery.getScript("/core/alerts/alerts.js", function () {
|
||
galert(['div.nav_and_browser', 'div.header', '#universal_header',
|
||
'body > *:nth-child(1)'])
|
||
});
|
||
</script>
|
||
</head>
|
||
<body>
|
||
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
||
<div id="titlearea">
|
||
<table cellspacing="0" cellpadding="0">
|
||
<tbody>
|
||
<tr style="height: 56px;">
|
||
<td id="projectalign" style="padding-left: 0.5em;">
|
||
<div id="projectname">NCBI C++ ToolKit
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
<!-- end header part -->
|
||
<!-- Generated by Doxygen 1.9.0 -->
|
||
<script type="text/javascript" src="menudata.js"></script>
|
||
<script type="text/javascript" src="menu.js"></script>
|
||
<script type="text/javascript">
|
||
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
|
||
$(function() {
|
||
initMenu('',true,true,'/toolkit/','Search');
|
||
});
|
||
/* @license-end */</script>
|
||
<div id="main-nav"></div>
|
||
</div><!-- top -->
|
||
<div class="header">
|
||
<div class="summary">
|
||
<a href="#pub-types">Public Types</a> |
|
||
<a href="#pub-methods">Public Member Functions</a> |
|
||
<a href="#pri-types">Private Types</a> |
|
||
<a href="#pri-methods">Private Member Functions</a> |
|
||
<a href="#pri-attribs">Private Attributes</a> |
|
||
<a href="classCGC__Assembly-members.html">List of all members</a> </div>
|
||
<div class="headertitle">
|
||
<div class="title">CGC_Assembly Class Reference</div> </div>
|
||
</div><!--header-->
|
||
<div class="contents">
|
||
<p>
|
||
<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CGC_Assembly">Search Toolkit Book for <i>CGC_Assembly</i></a>
|
||
</p>
|
||
|
||
<p><code>#include <<a class="el" href="GC__Assembly_8hpp_source.html">objects/genomecoll/GC_Assembly.hpp</a>></code></p>
|
||
<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
|
||
<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CGC_Assembly:</div>
|
||
<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
|
||
</div>
|
||
<div id="dynsection-0-content" class="dyncontent" style="display:none;">
|
||
<div class="center"><img src="img__inherit__graph/classCGC__Assembly__inherit__graph.png" border="0" usemap="#aCGC__Assembly_inherit__map" alt="Inheritance graph"/></div>
|
||
<map name="aCGC__Assembly_inherit__map" id="aCGC__Assembly_inherit__map">
|
||
<area shape="rect" title=" " alt="" coords="24,304,141,331"/>
|
||
<area shape="rect" href="classCGC__Assembly__Base.html" title="A GC-Assembly is either a single assembly unit or it is a set of assemblies." alt="" coords="5,229,160,256"/>
|
||
<area shape="rect" href="classCSerialObject.html" title="Base class for all serializable objects." alt="" coords="31,155,134,181"/>
|
||
<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="47,80,118,107"/>
|
||
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="18,5,147,32"/>
|
||
</map>
|
||
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
|
||
<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
|
||
<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CGC_Assembly:</div>
|
||
<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
|
||
</div>
|
||
<div id="dynsection-1-content" class="dyncontent" style="display:none;">
|
||
<div class="center"><img src="img__coll__graph/classCGC__Assembly__coll__graph.png" border="0" usemap="#aCGC__Assembly_coll__map" alt="Collaboration graph"/></div>
|
||
<map name="aCGC__Assembly_coll__map" id="aCGC__Assembly_coll__map">
|
||
<area shape="rect" title=" " alt="" coords="2143,144,2260,171"/>
|
||
<area shape="rect" href="classCGC__Assembly__Base.html" title="A GC-Assembly is either a single assembly unit or it is a set of assemblies." alt="" coords="1831,83,1986,109"/>
|
||
<area shape="rect" href="classCSerialObject.html" title="Base class for all serializable objects." alt="" coords="1454,67,1557,93"/>
|
||
<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="1225,35,1295,61"/>
|
||
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="767,5,896,32"/>
|
||
<area shape="rect" href="classmap.html" title=" " alt="" coords="1828,137,1989,178"/>
|
||
<area shape="rect" href="classmap__checker.html" title=" " alt="" coords="1149,203,1371,259"/>
|
||
<area shape="rect" href="classCAtomicCounter__WithAutoInit.html" title="CAtomicCounter_WithAutoInit –." alt="" coords="300,153,499,180"/>
|
||
<area shape="rect" href="classmap__checker.html" title=" " alt="" coords="741,153,921,180"/>
|
||
<area shape="rect" href="classmap__checker.html" title=" " alt="" coords="1172,114,1348,155"/>
|
||
<area shape="rect" href="classCAtomicCounter.html" title="CAtomicCounter –." alt="" coords="41,153,159,180"/>
|
||
<area shape="rect" title=" " alt="" coords="736,368,927,424"/>
|
||
<area shape="rect" href="classCSeq__id__Handle.html" title=" " alt="" coords="339,421,459,448"/>
|
||
<area shape="rect" href="classCConstRef.html" title=" " alt="" coords="5,414,195,455"/>
|
||
<area shape="rect" title=" " alt="" coords="338,352,461,379"/>
|
||
<area shape="rect" title=" " alt="" coords="753,302,909,343"/>
|
||
<area shape="rect" title=" " alt="" coords="81,361,119,388"/>
|
||
<area shape="rect" title=" " alt="" coords="81,296,119,323"/>
|
||
<area shape="rect" href="classmap.html" title=" " alt="" coords="1420,121,1591,148"/>
|
||
<area shape="rect" href="classCMutex.html" title="CMutex –." alt="" coords="1875,209,1943,236"/>
|
||
<area shape="rect" title=" " alt="" coords="1449,223,1561,249"/>
|
||
</map>
|
||
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
|
||
<table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
|
||
Public Types</h2></td></tr>
|
||
<tr class="memitem:af8b387eed6927a06947f951b76e1bbca"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">ESubset</a> { <br />
|
||
  <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaab46cf20b78007598f50210034c1b0182">eChromosome</a>
|
||
, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaab9b261fe996064084e26d3e44815c84d">eScaffold</a>
|
||
, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaa1f64f22fbda86d04bc85b77929c5523c">eComponent</a>
|
||
, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaa1635b4bac5f311ae140fcdd0d5245167">eTopLevel</a>
|
||
, <br />
|
||
  <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaabb4f428a6423f69f47b7a52eeb596072">eSubmitterPseudoScaffold</a>
|
||
, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbcaa03910f80e49122aad713d7ee46ea469b">eAll</a>
|
||
<br />
|
||
}</td></tr>
|
||
<tr class="separator:af8b387eed6927a06947f951b76e1bbca"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a75492ab26cf665f370a435fe75afc060"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060">EFindSeqOption</a> { <a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060aedac199f5851cd7ca0602ccf707ecef3">eEnforceSingle</a>
|
||
, <a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060a0b887251ed2c7676b35a22dd87f6ec2a">eChooseAny</a>
|
||
, <a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060ac919a197b9289753072b74daff7c5d02">eChooseBest</a>
|
||
}</td></tr>
|
||
<tr class="separator:a75492ab26cf665f370a435fe75afc060"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aba89644ac22510808fa79519ecb2eb06"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a></td></tr>
|
||
<tr class="separator:aba89644ac22510808fa79519ecb2eb06"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a5af4f6facbf1b43a88cabee6c6cef4bc"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a5af4f6facbf1b43a88cabee6c6cef4bc">TAssemblyUnits</a></td></tr>
|
||
<tr class="separator:a5af4f6facbf1b43a88cabee6c6cef4bc"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a094c5c7fde223ac4f2225b599f0ce015"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a094c5c7fde223ac4f2225b599f0ce015">TFullAssemblies</a></td></tr>
|
||
<tr class="separator:a094c5c7fde223ac4f2225b599f0ce015"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCGC__Assembly__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCGC__Assembly__Base')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCGC__Assembly__Base.html">CGC_Assembly_Base</a></td></tr>
|
||
<tr class="memitem:ga3a2c42f16e8cd0ace171ef71b059388c inherit pub_types_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> { <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga3a2c42f16e8cd0ace171ef71b059388cad628da7e64e23da9474671f1106803b5">e_not_set</a> = 0
|
||
, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga3a2c42f16e8cd0ace171ef71b059388ca07403b5a394f6188891d41ba08a81543">e_Unit</a>
|
||
, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga3a2c42f16e8cd0ace171ef71b059388ca5f008e8add209b1215a8d724248572ef">e_Assembly_set</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3a2c42f16e8cd0ace171ef71b059388c"><td class="mdescLeft"> </td><td class="mdescRight">Choice variants. <a href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3a2c42f16e8cd0ace171ef71b059388c inherit pub_types_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab1cc75c3e82a5c3740f7b85b4a3ea653 inherit pub_types_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gab1cc75c3e82a5c3740f7b85b4a3ea653">E_ChoiceStopper</a> { <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ggab1cc75c3e82a5c3740f7b85b4a3ea653a73a684b7e8af374311aa502a99c82ef1">e_MaxChoice</a> = 3
|
||
}</td></tr>
|
||
<tr class="memdesc:gab1cc75c3e82a5c3740f7b85b4a3ea653"><td class="mdescLeft"> </td><td class="mdescRight">Maximum+1 value of the choice variant enumerator. <a href="group__dataspec__NCBI__GenomeCollection.html#gab1cc75c3e82a5c3740f7b85b4a3ea653">More...</a><br /></td></tr>
|
||
<tr class="separator:gab1cc75c3e82a5c3740f7b85b4a3ea653 inherit pub_types_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9ff8cbd16f55e02c8fdf9a492c471347 inherit pub_types_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ff8cbd16f55e02c8fdf9a492c471347">TUnit</a></td></tr>
|
||
<tr class="separator:ga9ff8cbd16f55e02c8fdf9a492c471347 inherit pub_types_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9ee646eb92155aa61c6a7c28cf5ea445 inherit pub_types_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCGC__AssemblySet.html">CGC_AssemblySet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ee646eb92155aa61c6a7c28cf5ea445">TAssembly_set</a></td></tr>
|
||
<tr class="separator:ga9ee646eb92155aa61c6a7c28cf5ea445 inherit pub_types_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
|
||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
|
||
Public Member Functions</h2></td></tr>
|
||
<tr class="memitem:a5e3953e6d01e9936274479120b767de4"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a5e3953e6d01e9936274479120b767de4">CGC_Assembly</a> (void)</td></tr>
|
||
<tr class="separator:a5e3953e6d01e9936274479120b767de4"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ab4c5e7b2b0a107856459145448e4079d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ab4c5e7b2b0a107856459145448e4079d">~CGC_Assembly</a> (void)</td></tr>
|
||
<tr class="separator:ab4c5e7b2b0a107856459145448e4079d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:adad15e5fc0a1e96a2b99df9a3b9b1de6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#adad15e5fc0a1e96a2b99df9a3b9b1de6">GetReleaseId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:adad15e5fc0a1e96a2b99df9a3b9b1de6"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the release id for this assembly. <a href="classCGC__Assembly.html#adad15e5fc0a1e96a2b99df9a3b9b1de6">More...</a><br /></td></tr>
|
||
<tr class="separator:adad15e5fc0a1e96a2b99df9a3b9b1de6"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a31ec76e58955a2c3c85bf82e4393042e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a31ec76e58955a2c3c85bf82e4393042e">GetAccession</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a31ec76e58955a2c3c85bf82e4393042e"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the accession for this assembly. <a href="classCGC__Assembly.html#a31ec76e58955a2c3c85bf82e4393042e">More...</a><br /></td></tr>
|
||
<tr class="separator:a31ec76e58955a2c3c85bf82e4393042e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a5d0cd9521f240e0ff26312b9daf9af33"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a5d0cd9521f240e0ff26312b9daf9af33">GetBestIdentifier</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a5d0cd9521f240e0ff26312b9daf9af33"><td class="mdescLeft"> </td><td class="mdescRight">Either accession or submitter-provided id. <a href="classCGC__Assembly.html#a5d0cd9521f240e0ff26312b9daf9af33">More...</a><br /></td></tr>
|
||
<tr class="separator:a5d0cd9521f240e0ff26312b9daf9af33"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa934cfa13ff193ce9c155a731537ad89"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__AssemblyDesc.html">CGC_AssemblyDesc</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#aa934cfa13ff193ce9c155a731537ad89">GetDesc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:aa934cfa13ff193ce9c155a731537ad89"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the full set of assembly descriptors. <a href="classCGC__Assembly.html#aa934cfa13ff193ce9c155a731537ad89">More...</a><br /></td></tr>
|
||
<tr class="separator:aa934cfa13ff193ce9c155a731537ad89"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a3fdc97341bead60190e2fd4f58b83672"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#gac1947a5600889669571884ebe66ec0e0">TTaxId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a3fdc97341bead60190e2fd4f58b83672">GetTaxId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a3fdc97341bead60190e2fd4f58b83672"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the tax-id for this assembly. <a href="classCGC__Assembly.html#a3fdc97341bead60190e2fd4f58b83672">More...</a><br /></td></tr>
|
||
<tr class="separator:a3fdc97341bead60190e2fd4f58b83672"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a51edce200fa9701fa4aa2bac3c228a24"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a51edce200fa9701fa4aa2bac3c228a24">GetName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a51edce200fa9701fa4aa2bac3c228a24"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the name of this assembly. <a href="classCGC__Assembly.html#a51edce200fa9701fa4aa2bac3c228a24">More...</a><br /></td></tr>
|
||
<tr class="separator:a51edce200fa9701fa4aa2bac3c228a24"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:af4644fc89e5e1acc4c9a807eab9db5c4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#af4644fc89e5e1acc4c9a807eab9db5c4">GetDisplayName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:af4644fc89e5e1acc4c9a807eab9db5c4"><td class="mdescLeft"> </td><td class="mdescRight">Get full label for assmebly; if this is a unit, full assembly name followed by unit name. <a href="classCGC__Assembly.html#af4644fc89e5e1acc4c9a807eab9db5c4">More...</a><br /></td></tr>
|
||
<tr class="separator:af4644fc89e5e1acc4c9a807eab9db5c4"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a5d50397781cc4fa92533cdd537e25ed2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a5d50397781cc4fa92533cdd537e25ed2">GetFileSafeName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a5d50397781cc4fa92533cdd537e25ed2"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the file-safe version of assembly name, if available; othwreise default to standard name. <a href="classCGC__Assembly.html#a5d50397781cc4fa92533cdd537e25ed2">More...</a><br /></td></tr>
|
||
<tr class="separator:a5d50397781cc4fa92533cdd537e25ed2"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ab1ca8d034be17783c12ba9d857ea7e51"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ab1ca8d034be17783c12ba9d857ea7e51">GetFileSafeDisplayName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ab1ca8d034be17783c12ba9d857ea7e51"><td class="mdescLeft"> </td><td class="mdescRight">Get file-safe version of full label for assmebly. <a href="classCGC__Assembly.html#ab1ca8d034be17783c12ba9d857ea7e51">More...</a><br /></td></tr>
|
||
<tr class="separator:ab1ca8d034be17783c12ba9d857ea7e51"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ab3fc2562b2d448a0879bacee25669b75"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ab3fc2562b2d448a0879bacee25669b75">IsRefSeq</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ab3fc2562b2d448a0879bacee25669b75"><td class="mdescLeft"> </td><td class="mdescRight">Is this assembly a RefSeq assembly? <a href="classCGC__Assembly.html#ab3fc2562b2d448a0879bacee25669b75">More...</a><br /></td></tr>
|
||
<tr class="separator:ab3fc2562b2d448a0879bacee25669b75"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a7abb956fd514fff0a6bf6926dbb0b7bc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a7abb956fd514fff0a6bf6926dbb0b7bc">IsGenBank</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a7abb956fd514fff0a6bf6926dbb0b7bc"><td class="mdescLeft"> </td><td class="mdescRight">Is this assembly a GenBank assembly? <a href="classCGC__Assembly.html#a7abb956fd514fff0a6bf6926dbb0b7bc">More...</a><br /></td></tr>
|
||
<tr class="separator:a7abb956fd514fff0a6bf6926dbb0b7bc"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a39558bb5b2deeda4e5cf9f2d700344ff"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a39558bb5b2deeda4e5cf9f2d700344ff">IsOrganelle</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a39558bb5b2deeda4e5cf9f2d700344ff"><td class="mdescLeft"> </td><td class="mdescRight">Is this a non-nuclear assembly unit? <a href="classCGC__Assembly.html#a39558bb5b2deeda4e5cf9f2d700344ff">More...</a><br /></td></tr>
|
||
<tr class="separator:a39558bb5b2deeda4e5cf9f2d700344ff"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a4483d90ede0b7bb272ad1ae31fd145f5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2ff96ef7f111d8fd5315de816ac62eac">CGC_AssemblyUnit::TClass</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a4483d90ede0b7bb272ad1ae31fd145f5">GetUnitClass</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a4483d90ede0b7bb272ad1ae31fd145f5"><td class="mdescLeft"> </td><td class="mdescRight">If this is an assembly unit, get unit class. <a href="classCGC__Assembly.html#a4483d90ede0b7bb272ad1ae31fd145f5">More...</a><br /></td></tr>
|
||
<tr class="separator:a4483d90ede0b7bb272ad1ae31fd145f5"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a3aeef8ec2038c68ad58a3ea69164c23c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a3aeef8ec2038c68ad58a3ea69164c23c">CreateHierarchy</a> (<a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> *target_set=<a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>)</td></tr>
|
||
<tr class="memdesc:a3aeef8ec2038c68ad58a3ea69164c23c"><td class="mdescLeft"> </td><td class="mdescRight">Generate the internal up-pointers. <a href="classCGC__Assembly.html#a3aeef8ec2038c68ad58a3ea69164c23c">More...</a><br /></td></tr>
|
||
<tr class="separator:a3aeef8ec2038c68ad58a3ea69164c23c"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ad16d29b5412f350bdb3524ae038adf76"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ad16d29b5412f350bdb3524ae038adf76">CreateIndex</a> ()</td></tr>
|
||
<tr class="memdesc:ad16d29b5412f350bdb3524ae038adf76"><td class="mdescLeft"> </td><td class="mdescRight">Generate the Seq-id index. <a href="classCGC__Assembly.html#ad16d29b5412f350bdb3524ae038adf76">More...</a><br /></td></tr>
|
||
<tr class="separator:ad16d29b5412f350bdb3524ae038adf76"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:acdb681986db82ab1f54ec5fd96874afe"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#acdb681986db82ab1f54ec5fd96874afe">GetMolecules</a> (<a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> &molecules, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">ESubset</a> subset) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:acdb681986db82ab1f54ec5fd96874afe"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a subset of molecules. <a href="classCGC__Assembly.html#acdb681986db82ab1f54ec5fd96874afe">More...</a><br /></td></tr>
|
||
<tr class="separator:acdb681986db82ab1f54ec5fd96874afe"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a94f51a0f60abddefb46be55f7c195e1b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a94f51a0f60abddefb46be55f7c195e1b">GetMoleculesByUnit</a> (vector< <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> > &molecules, <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">ESubset</a> subset) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a94f51a0f60abddefb46be55f7c195e1b"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a subset of molecules separately for each unit, in the same order in which the units are returned by <a class="el" href="classCGC__Assembly.html#a5dbfd3b36bfee7dba1ee1ddb03cc6348" title="Retrieve a list of all assembly units contained in this assembly.">GetAssemblyUnits()</a> <a href="classCGC__Assembly.html#a94f51a0f60abddefb46be55f7c195e1b">More...</a><br /></td></tr>
|
||
<tr class="separator:a94f51a0f60abddefb46be55f7c195e1b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a5dbfd3b36bfee7dba1ee1ddb03cc6348"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html#a5af4f6facbf1b43a88cabee6c6cef4bc">TAssemblyUnits</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a5dbfd3b36bfee7dba1ee1ddb03cc6348">GetAssemblyUnits</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a5dbfd3b36bfee7dba1ee1ddb03cc6348"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a list of all assembly units contained in this assembly. <a href="classCGC__Assembly.html#a5dbfd3b36bfee7dba1ee1ddb03cc6348">More...</a><br /></td></tr>
|
||
<tr class="separator:a5dbfd3b36bfee7dba1ee1ddb03cc6348"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a548449924a57974cbfad38c096a74bde"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html#a094c5c7fde223ac4f2225b599f0ce015">TFullAssemblies</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a548449924a57974cbfad38c096a74bde">GetFullAssemblies</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a548449924a57974cbfad38c096a74bde"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a list of all full assemblies contained in this assembly Note that, if the assembly is a full assembly, then it will be the only assembly returned; also, if the assembly is not an assembly set, then the base assembly will be returned. <a href="classCGC__Assembly.html#a548449924a57974cbfad38c096a74bde">More...</a><br /></td></tr>
|
||
<tr class="separator:a548449924a57974cbfad38c096a74bde"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a9e992afa3ef570dc8f50df026546cf67"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a9e992afa3ef570dc8f50df026546cf67">Find</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> &id, <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> &sequences) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a9e992afa3ef570dc8f50df026546cf67"><td class="mdescLeft"> </td><td class="mdescRight">Find all references to a given sequence within an assembly. <a href="classCGC__Assembly.html#a9e992afa3ef570dc8f50df026546cf67">More...</a><br /></td></tr>
|
||
<tr class="separator:a9e992afa3ef570dc8f50df026546cf67"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a100e74847b7f432d54dd0828c3432792"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a100e74847b7f432d54dd0828c3432792">Find</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> &id, <a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060">EFindSeqOption</a> find_option=<a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060aedac199f5851cd7ca0602ccf707ecef3">eEnforceSingle</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a100e74847b7f432d54dd0828c3432792"><td class="mdescLeft"> </td><td class="mdescRight">Find a single sequence corresponding to the supplied id. <a href="classCGC__Assembly.html#a100e74847b7f432d54dd0828c3432792">More...</a><br /></td></tr>
|
||
<tr class="separator:a100e74847b7f432d54dd0828c3432792"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ad246c89599ff46548d5453806b4b59ca"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ad246c89599ff46548d5453806b4b59ca">GetRepliconTypeLocRole</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> &id, <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="structtype.html">type</a>, <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#a643c1650dccabb6925471bf2c01f5204">location</a>, <a class="el" href="classset.html">set</a>< <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> > &role) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ad246c89599ff46548d5453806b4b59ca"><td class="mdescLeft"> </td><td class="mdescRight">Returns replicon type, location and role. <a href="classCGC__Assembly.html#ad246c89599ff46548d5453806b4b59ca">More...</a><br /></td></tr>
|
||
<tr class="separator:ad246c89599ff46548d5453806b4b59ca"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a67f774278fb4aff84ba447c84b40e70c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a67f774278fb4aff84ba447c84b40e70c">PreWrite</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a67f774278fb4aff84ba447c84b40e70c"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classCGC__Assembly.html#a67f774278fb4aff84ba447c84b40e70c" title="PreWrite() / PostRead() handle events for indexing of local structures.">PreWrite()</a> / <a class="el" href="classCGC__Assembly.html#a705965053b5a32d72463fbe0f33a0e45">PostRead()</a> handle events for indexing of local structures. <a href="classCGC__Assembly.html#a67f774278fb4aff84ba447c84b40e70c">More...</a><br /></td></tr>
|
||
<tr class="separator:a67f774278fb4aff84ba447c84b40e70c"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a705965053b5a32d72463fbe0f33a0e45"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a705965053b5a32d72463fbe0f33a0e45">PostRead</a> ()</td></tr>
|
||
<tr class="separator:a705965053b5a32d72463fbe0f33a0e45"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aea9f591ac6b16f946bfe4f1e582e4d92"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#aea9f591ac6b16f946bfe4f1e582e4d92">GetTargetSet</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:aea9f591ac6b16f946bfe4f1e582e4d92"><td class="mdescLeft"> </td><td class="mdescRight">Access the top-level target set that this assemhly belongs to. <a href="classCGC__Assembly.html#aea9f591ac6b16f946bfe4f1e582e4d92">More...</a><br /></td></tr>
|
||
<tr class="separator:aea9f591ac6b16f946bfe4f1e582e4d92"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a6f03a2dfe8140d55989c88e598980634"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a6f03a2dfe8140d55989c88e598980634">IsTargetSetReference</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a6f03a2dfe8140d55989c88e598980634"><td class="mdescLeft"> </td><td class="mdescRight">Is this assembly the reference assembly of the target set, or part of it? <a href="classCGC__Assembly.html#a6f03a2dfe8140d55989c88e598980634">More...</a><br /></td></tr>
|
||
<tr class="separator:a6f03a2dfe8140d55989c88e598980634"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCGC__Assembly__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCGC__Assembly__Base')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCGC__Assembly__Base.html">CGC_Assembly_Base</a></td></tr>
|
||
<tr class="memitem:ga41824dc6feb84aa1e99faaf6f60bbbe7 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga41824dc6feb84aa1e99faaf6f60bbbe7">CGC_Assembly_Base</a> (void)</td></tr>
|
||
<tr class="separator:ga41824dc6feb84aa1e99faaf6f60bbbe7 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1e235a9fb0ec660c14cb56bfa8e5ea23 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga1e235a9fb0ec660c14cb56bfa8e5ea23">~CGC_Assembly_Base</a> (void)</td></tr>
|
||
<tr class="separator:ga1e235a9fb0ec660c14cb56bfa8e5ea23 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga740bf75da5a942e3a3b57a2bbc329e04 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga740bf75da5a942e3a3b57a2bbc329e04">DECLARE_INTERNAL_TYPE_INFO</a> ()</td></tr>
|
||
<tr class="separator:ga740bf75da5a942e3a3b57a2bbc329e04 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga3d2a540abc42611c2a9ae2fffe79f220 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3d2a540abc42611c2a9ae2fffe79f220">Reset</a> (void)</td></tr>
|
||
<tr class="memdesc:ga3d2a540abc42611c2a9ae2fffe79f220 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset the whole object. <a href="group__dataspec__NCBI__GenomeCollection.html#ga3d2a540abc42611c2a9ae2fffe79f220">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3d2a540abc42611c2a9ae2fffe79f220 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga327bc901acf4d46c3445795a2a2eaafb inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga327bc901acf4d46c3445795a2a2eaafb">ResetSelection</a> (void)</td></tr>
|
||
<tr class="memdesc:ga327bc901acf4d46c3445795a2a2eaafb inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset the selection (set it to e_not_set). <a href="group__dataspec__NCBI__GenomeCollection.html#ga327bc901acf4d46c3445795a2a2eaafb">More...</a><br /></td></tr>
|
||
<tr class="separator:ga327bc901acf4d46c3445795a2a2eaafb inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga310e935540bc0f9488634ce9d6dbd328 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga310e935540bc0f9488634ce9d6dbd328">Which</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga310e935540bc0f9488634ce9d6dbd328 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Which variant is currently selected. <a href="group__dataspec__NCBI__GenomeCollection.html#ga310e935540bc0f9488634ce9d6dbd328">More...</a><br /></td></tr>
|
||
<tr class="separator:ga310e935540bc0f9488634ce9d6dbd328 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5326e73e57dbab1d98ac7310155bf60e inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5326e73e57dbab1d98ac7310155bf60e">CheckSelected</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5326e73e57dbab1d98ac7310155bf60e inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Verify selection, throw exception if it differs from the expected. <a href="group__dataspec__NCBI__GenomeCollection.html#ga5326e73e57dbab1d98ac7310155bf60e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5326e73e57dbab1d98ac7310155bf60e inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9434d4698191400b9b4237af78a9c86d inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9434d4698191400b9b4237af78a9c86d">ThrowInvalidSelection</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga9434d4698191400b9b4237af78a9c86d inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Throw 'InvalidSelection' exception. <a href="group__dataspec__NCBI__GenomeCollection.html#ga9434d4698191400b9b4237af78a9c86d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9434d4698191400b9b4237af78a9c86d inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga88a55615cce51333b096ed53d1a9d449 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga88a55615cce51333b096ed53d1a9d449">Select</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> index, <a class="el" href="group__GenClassSupport.html#ga7c6a1c466f2038d9c701334252e2ac91">EResetVariant</a> reset=<a class="el" href="group__GenClassSupport.html#gga7c6a1c466f2038d9c701334252e2ac91a2b52bf0dd0543d7d6bc95de9d25cf804">eDoResetVariant</a>)</td></tr>
|
||
<tr class="memdesc:ga88a55615cce51333b096ed53d1a9d449 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the requested variant if needed. <a href="group__dataspec__NCBI__GenomeCollection.html#ga88a55615cce51333b096ed53d1a9d449">More...</a><br /></td></tr>
|
||
<tr class="separator:ga88a55615cce51333b096ed53d1a9d449 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf5b4d0233289242f59e00db93995db77 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaf5b4d0233289242f59e00db93995db77">Select</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> index, <a class="el" href="group__GenClassSupport.html#ga7c6a1c466f2038d9c701334252e2ac91">EResetVariant</a> reset, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *pool)</td></tr>
|
||
<tr class="memdesc:gaf5b4d0233289242f59e00db93995db77 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the requested variant if needed, allocating <a class="el" href="classCObject.html" title="CObject –.">CObject</a> variants from memory pool. <a href="group__dataspec__NCBI__GenomeCollection.html#gaf5b4d0233289242f59e00db93995db77">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5b4d0233289242f59e00db93995db77 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gac4544863303700390e2ec723bd0d5807 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gac4544863303700390e2ec723bd0d5807">IsUnit</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gac4544863303700390e2ec723bd0d5807 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if variant Unit is selected. <a href="group__dataspec__NCBI__GenomeCollection.html#gac4544863303700390e2ec723bd0d5807">More...</a><br /></td></tr>
|
||
<tr class="separator:gac4544863303700390e2ec723bd0d5807 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga24e3ac2235cf0ae4e212f000a5227b31 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ff8cbd16f55e02c8fdf9a492c471347">TUnit</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga24e3ac2235cf0ae4e212f000a5227b31">GetUnit</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga24e3ac2235cf0ae4e212f000a5227b31 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the variant data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga24e3ac2235cf0ae4e212f000a5227b31">More...</a><br /></td></tr>
|
||
<tr class="separator:ga24e3ac2235cf0ae4e212f000a5227b31 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabe719a96a4c0ea67882d50c1faad354c inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ff8cbd16f55e02c8fdf9a492c471347">TUnit</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gabe719a96a4c0ea67882d50c1faad354c">SetUnit</a> (void)</td></tr>
|
||
<tr class="memdesc:gabe719a96a4c0ea67882d50c1faad354c inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the variant. <a href="group__dataspec__NCBI__GenomeCollection.html#gabe719a96a4c0ea67882d50c1faad354c">More...</a><br /></td></tr>
|
||
<tr class="separator:gabe719a96a4c0ea67882d50c1faad354c inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2bf7e7610a5897138a1865afd8c79bb2 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2bf7e7610a5897138a1865afd8c79bb2">SetUnit</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ff8cbd16f55e02c8fdf9a492c471347">TUnit</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga2bf7e7610a5897138a1865afd8c79bb2 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the variant and set its data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga2bf7e7610a5897138a1865afd8c79bb2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2bf7e7610a5897138a1865afd8c79bb2 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga62ea71b35656f3fb6f3fef6b07b3fb85 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga62ea71b35656f3fb6f3fef6b07b3fb85">IsAssembly_set</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga62ea71b35656f3fb6f3fef6b07b3fb85 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if variant Assembly_set is selected. <a href="group__dataspec__NCBI__GenomeCollection.html#ga62ea71b35656f3fb6f3fef6b07b3fb85">More...</a><br /></td></tr>
|
||
<tr class="separator:ga62ea71b35656f3fb6f3fef6b07b3fb85 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga94692e427edea07b61fd1ee0b373934f inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ee646eb92155aa61c6a7c28cf5ea445">TAssembly_set</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga94692e427edea07b61fd1ee0b373934f">GetAssembly_set</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga94692e427edea07b61fd1ee0b373934f inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the variant data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga94692e427edea07b61fd1ee0b373934f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga94692e427edea07b61fd1ee0b373934f inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad7cc419869d4677a6ee3a51787a3a00a inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ee646eb92155aa61c6a7c28cf5ea445">TAssembly_set</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gad7cc419869d4677a6ee3a51787a3a00a">SetAssembly_set</a> (void)</td></tr>
|
||
<tr class="memdesc:gad7cc419869d4677a6ee3a51787a3a00a inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the variant. <a href="group__dataspec__NCBI__GenomeCollection.html#gad7cc419869d4677a6ee3a51787a3a00a">More...</a><br /></td></tr>
|
||
<tr class="separator:gad7cc419869d4677a6ee3a51787a3a00a inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga58913761252000e164bcc459bdfa66e2 inherit pub_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga58913761252000e164bcc459bdfa66e2">SetAssembly_set</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9ee646eb92155aa61c6a7c28cf5ea445">TAssembly_set</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga58913761252000e164bcc459bdfa66e2 inherit pub_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Select the variant and set its data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga58913761252000e164bcc459bdfa66e2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga58913761252000e164bcc459bdfa66e2 inherit pub_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
|
||
<tr class="memitem:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga8575b1015c4a4f3336b6e1c0a4324b71">CSerialObject</a> (void)</td></tr>
|
||
<tr class="separator:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gaf278b96157abad20b5d944fb83d32fb1">~CSerialObject</a> (void)</td></tr>
|
||
<tr class="separator:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTypeInfo.html">CTypeInfo</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacb5d8a2e6878e58aeaeaf342081f0b7f">GetThisTypeInfo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> =0</td></tr>
|
||
<tr class="separator:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">Assign</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &source, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>)</td></tr>
|
||
<tr class="memdesc:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Set object to copy of another one. <a href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">Equals</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &object, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if both objects contain the same values. <a href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">More...</a><br /></td></tr>
|
||
<tr class="separator:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga7382b4cd30306d9444f85abd912ff61e">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab5506012856f3627d88368a24e1eb254">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi__sample__base_8hpp.html#a8334353b550f5c3b6d2ea57d716ab2e2">file_name</a>, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> file_line) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">HasNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object data type has namespace name. <a href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">GetNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace name. <a href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">More...</a><br /></td></tr>
|
||
<tr class="separator:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">HasNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if data type has namespace prefix. <a href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">More...</a><br /></td></tr>
|
||
<tr class="separator:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">GetNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace prefix. <a href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">More...</a><br /></td></tr>
|
||
<tr class="separator:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
|
||
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
|
||
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
|
||
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
|
||
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
|
||
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
|
||
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
|
||
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-types"></a>
|
||
Private Types</h2></td></tr>
|
||
<tr class="memitem:ab5b1c84b89e6f61438107c97e8236f9a"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCGC__Assembly__Base.html">CGC_Assembly_Base</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ab5b1c84b89e6f61438107c97e8236f9a">Tparent</a></td></tr>
|
||
<tr class="separator:ab5b1c84b89e6f61438107c97e8236f9a"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:abfb8768edf19e551c5248f60e6dadef6"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classmap.html">map</a>< <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a>, <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#abfb8768edf19e551c5248f60e6dadef6">TSequenceIndex</a></td></tr>
|
||
<tr class="separator:abfb8768edf19e551c5248f60e6dadef6"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
|
||
Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:add361ef634d6701cea823dfcd5520bc3"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#add361ef634d6701cea823dfcd5520bc3">CGC_Assembly</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="separator:add361ef634d6701cea823dfcd5520bc3"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:afad855ac2a649de87b1ce20f761fb856"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#afad855ac2a649de87b1ce20f761fb856">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="separator:afad855ac2a649de87b1ce20f761fb856"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa6007b69e8eb197c7f145dd9f10cb488"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#aa6007b69e8eb197c7f145dd9f10cb488">x_Index</a> (<a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> &assm, <a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> &replicon)</td></tr>
|
||
<tr class="memdesc:aa6007b69e8eb197c7f145dd9f10cb488"><td class="mdescLeft"> </td><td class="mdescRight">indexing infrastructure <a href="classCGC__Assembly.html#aa6007b69e8eb197c7f145dd9f10cb488">More...</a><br /></td></tr>
|
||
<tr class="separator:aa6007b69e8eb197c7f145dd9f10cb488"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a2148181e8034b0c92c258a90273f7bdc"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a2148181e8034b0c92c258a90273f7bdc">x_Index</a> (<a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> &assm, <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &seq)</td></tr>
|
||
<tr class="separator:a2148181e8034b0c92c258a90273f7bdc"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a771547c86d419698df0ca48aa030d99e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a771547c86d419698df0ca48aa030d99e">x_Index</a> (<a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> &unit, <a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> &replicon)</td></tr>
|
||
<tr class="separator:a771547c86d419698df0ca48aa030d99e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aefaaa3dec104746ecdf6f90f92862521"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#aefaaa3dec104746ecdf6f90f92862521">x_Index</a> (<a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> &unit, <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &seq)</td></tr>
|
||
<tr class="separator:aefaaa3dec104746ecdf6f90f92862521"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a74b56580572ac06f87c7456bd43aad7e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a74b56580572ac06f87c7456bd43aad7e">x_Index</a> (<a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> &replicon, <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &seq)</td></tr>
|
||
<tr class="separator:a74b56580572ac06f87c7456bd43aad7e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a78ab430ea8ce9ddd1d967fba33114a8e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a78ab430ea8ce9ddd1d967fba33114a8e">x_Index</a> (<a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &parent, <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &seq, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> relation)</td></tr>
|
||
<tr class="separator:a78ab430ea8ce9ddd1d967fba33114a8e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a10518e5efb62c432839842e7a1d039e9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a10518e5efb62c432839842e7a1d039e9">x_Index</a> (<a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &seq, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> relation)</td></tr>
|
||
<tr class="separator:a10518e5efb62c432839842e7a1d039e9"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a48160036dc2541d57f5f8a2d66f25c2c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a48160036dc2541d57f5f8a2d66f25c2c">x_Index</a> (<a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> &root)</td></tr>
|
||
<tr class="separator:a48160036dc2541d57f5f8a2d66f25c2c"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ab0e9bbaca7ceaf4612d756b88e1e4785"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCDbtag.html">CDbtag</a> > > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ab0e9bbaca7ceaf4612d756b88e1e4785">x_GetId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:ab0e9bbaca7ceaf4612d756b88e1e4785"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a4b32582ecb2253e85d9a82d3636c3127"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a4b32582ecb2253e85d9a82d3636c3127">x_GetSubmitterId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a4b32582ecb2253e85d9a82d3636c3127"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
|
||
Private Attributes</h2></td></tr>
|
||
<tr class="memitem:a85bd30b9155b031f6f2de98d10e937f4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCMutex.html">CMutex</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#a85bd30b9155b031f6f2de98d10e937f4">m_Mutex</a></td></tr>
|
||
<tr class="separator:a85bd30b9155b031f6f2de98d10e937f4"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:acd9f291cae4e40bfb56e89917d9a342d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html#abfb8768edf19e551c5248f60e6dadef6">TSequenceIndex</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#acd9f291cae4e40bfb56e89917d9a342d">m_SequenceMap</a></td></tr>
|
||
<tr class="separator:acd9f291cae4e40bfb56e89917d9a342d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ac52a1ca5dbb90f9540db4fb9dbb9112c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Assembly.html#ac52a1ca5dbb90f9540db4fb9dbb9112c">m_TargetSet</a></td></tr>
|
||
<tr class="separator:ac52a1ca5dbb90f9540db4fb9dbb9112c"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
|
||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCGC__Assembly__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCGC__Assembly__Base')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCGC__Assembly__Base.html">CGC_Assembly_Base</a></td></tr>
|
||
<tr class="memitem:gaa1627d7d62c09fe0ee1c8263f9f01bee inherit pub_static_methods_classCGC__Assembly__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaa1627d7d62c09fe0ee1c8263f9f01bee">SelectionName</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga3a2c42f16e8cd0ace171ef71b059388c">E_Choice</a> index)</td></tr>
|
||
<tr class="memdesc:gaa1627d7d62c09fe0ee1c8263f9f01bee inherit pub_static_methods_classCGC__Assembly__Base"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve selection name (for diagnostic purposes). <a href="group__dataspec__NCBI__GenomeCollection.html#gaa1627d7d62c09fe0ee1c8263f9f01bee">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa1627d7d62c09fe0ee1c8263f9f01bee inherit pub_static_methods_classCGC__Assembly__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
|
||
<tr class="memitem:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab2a92c7a5b5900317294b85e854db07e">SetVerifyDataThread</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
|
||
<tr class="separator:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga2e3bead397d7ec0fffde866cd890267e">SetVerifyDataGlobal</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
|
||
<tr class="separator:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gada3dbb83951d0bed9bde06c6c4ede9e2">UnassignedString</a> (void)</td></tr>
|
||
<tr class="separator:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__STL.html#ga88e22aab83a29bae20f5354e89b041e3">CStringUTF8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga123d82fb69550b6418ad5d69e752873a">UnassignedStringUTF8</a> (void)</td></tr>
|
||
<tr class="separator:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga1d897c6ce0f541df2487600cedd9f40a">UnassignedByte</a> (void)</td></tr>
|
||
<tr class="separator:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
|
||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
|
||
<tr class="memitem:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacf732f6a9f64037d0cad32a72f7522ea">ms_UnassignedStr</a> = "<*unassigned*>"</td></tr>
|
||
<tr class="separator:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6baaf827f8d2e4f98be84d91d511a716">ms_UnassignedByte</a> = char(0xcd)</td></tr>
|
||
<tr class="separator:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock">
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00062">62</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||
<a id="a5af4f6facbf1b43a88cabee6c6cef4bc"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5af4f6facbf1b43a88cabee6c6cef4bc">◆ </a></span>TAssemblyUnits</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a><<a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a>> > <a class="el" href="classCGC__Assembly.html#a5af4f6facbf1b43a88cabee6c6cef4bc">CGC_Assembly::TAssemblyUnits</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00068">68</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a094c5c7fde223ac4f2225b599f0ce015"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a094c5c7fde223ac4f2225b599f0ce015">◆ </a></span>TFullAssemblies</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a><<a class="el" href="classCGC__Assembly.html">CGC_Assembly</a>> > <a class="el" href="classCGC__Assembly.html#a094c5c7fde223ac4f2225b599f0ce015">CGC_Assembly::TFullAssemblies</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00069">69</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ab5b1c84b89e6f61438107c97e8236f9a"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ab5b1c84b89e6f61438107c97e8236f9a">◆ </a></span>Tparent</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef <a class="el" href="classCGC__Assembly__Base.html">CGC_Assembly_Base</a> <a class="el" href="classCGC__Assembly.html#ab5b1c84b89e6f61438107c97e8236f9a">CGC_Assembly::Tparent</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00064">64</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="abfb8768edf19e551c5248f60e6dadef6"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#abfb8768edf19e551c5248f60e6dadef6">◆ </a></span>TSequenceIndex</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef <a class="el" href="classmap.html">map</a><<a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a>, <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a>> <a class="el" href="classCGC__Assembly.html#abfb8768edf19e551c5248f60e6dadef6">CGC_Assembly::TSequenceIndex</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00194">194</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aba89644ac22510808fa79519ecb2eb06"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aba89644ac22510808fa79519ecb2eb06">◆ </a></span>TSequenceList</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a><<a class="el" href="classCGC__Sequence.html">CGC_Sequence</a>> > <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">CGC_Assembly::TSequenceList</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00067">67</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Enumeration Documentation</h2>
|
||
<a id="a75492ab26cf665f370a435fe75afc060"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a75492ab26cf665f370a435fe75afc060">◆ </a></span>EFindSeqOption</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">enum <a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060">CGC_Assembly::EFindSeqOption</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
<table class="fieldtable">
|
||
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a75492ab26cf665f370a435fe75afc060aedac199f5851cd7ca0602ccf707ecef3"></a>eEnforceSingle </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="a75492ab26cf665f370a435fe75afc060a0b887251ed2c7676b35a22dd87f6ec2a"></a>eChooseAny </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="a75492ab26cf665f370a435fe75afc060ac919a197b9289753072b74daff7c5d02"></a>eChooseBest </td><td class="fielddoc"></td></tr>
|
||
</table>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00156">156</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="af8b387eed6927a06947f951b76e1bbca"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#af8b387eed6927a06947f951b76e1bbca">◆ </a></span>ESubset</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">enum <a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">CGC_Assembly::ESubset</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
<table class="fieldtable">
|
||
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaab46cf20b78007598f50210034c1b0182"></a>eChromosome </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaab9b261fe996064084e26d3e44815c84d"></a>eScaffold </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaa1f64f22fbda86d04bc85b77929c5523c"></a>eComponent </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaa1635b4bac5f311ae140fcdd0d5245167"></a>eTopLevel </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaabb4f428a6423f69f47b7a52eeb596072"></a>eSubmitterPseudoScaffold </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="af8b387eed6927a06947f951b76e1bbcaa03910f80e49122aad713d7ee46ea469b"></a>eAll </td><td class="fielddoc"></td></tr>
|
||
</table>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00124">124</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
|
||
<a id="a5e3953e6d01e9936274479120b767de4"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5e3953e6d01e9936274479120b767de4">◆ </a></span>CGC_Assembly() <span class="overload">[1/2]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">CGC_Assembly::CGC_Assembly </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00066">66</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ab4c5e7b2b0a107856459145448e4079d"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ab4c5e7b2b0a107856459145448e4079d">◆ </a></span>~CGC_Assembly()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">CGC_Assembly::~CGC_Assembly </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00073">73</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="add361ef634d6701cea823dfcd5520bc3"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#add361ef634d6701cea823dfcd5520bc3">◆ </a></span>CGC_Assembly() <span class="overload">[2/2]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">CGC_Assembly::CGC_Assembly </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td>
|
||
<td class="paramname"><em>value</em></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Function Documentation</h2>
|
||
<a id="a3aeef8ec2038c68ad58a3ea69164c23c"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a3aeef8ec2038c68ad58a3ea69164c23c">◆ </a></span>CreateHierarchy()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::CreateHierarchy </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> * </td>
|
||
<td class="paramname"><em>target_set</em> = <code><a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a></code></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Generate the internal up-pointers. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00460">460</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblySet___8hpp_source.html#l00094">CGC_AssemblySet_Base::eSet_type_assembly_set</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00093">CGC_AssemblySet_Base::eSet_type_full_assembly</a>, <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00197">m_TargetSet</a>, <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00130">CGC_Assembly_Base::SetAssembly_set()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="table__data__gcassembly_8cpp_source.html#l00131">CTableDataGCAssembly::Init()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00454">PostRead()</a>, and <a class="el" href="advanced__cleanup_8cpp_source.html#l00150">CAdvancedAlignCleanup::SetParams()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ad16d29b5412f350bdb3524ae038adf76"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ad16d29b5412f350bdb3524ae038adf76">◆ </a></span>CreateIndex()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::CreateIndex </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Generate the Seq-id index. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00511">511</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="map_8hpp_source.html#l00149">map_checker< Container >::empty()</a>, <a class="el" href="GC__TaggedSequences___8hpp_source.html#l00091">CGC_TaggedSequences_Base::eState_placed</a>, <a class="el" href="seq__id__handle_8cpp_source.html#l00113">CSeq_id_Handle::GetHandle()</a>, <a class="el" href="GC__Sequence_8cpp_source.html#l00084">CGC_Sequence::GetReplicon()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00528">CGC_Sequence_Base::GetSeq_id()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00558">CGC_Sequence_Base::GetSeq_id_synonyms()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00629">CGC_Sequence_Base::GetSequences()</a>, <a class="el" href="util_2debug_2set_8hpp_source.html#l00149">set< Key, Compare >::insert()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00546">CGC_Sequence_Base::IsSetSeq_id_synonyms()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00193">m_Mutex</a>, and <a class="el" href="GC__Assembly_8hpp_source.html#l00195">m_SequenceMap</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00384">Find()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a100e74847b7f432d54dd0828c3432792"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a100e74847b7f432d54dd0828c3432792">◆ </a></span>Find() <span class="overload">[1/2]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > CGC_Assembly::Find </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> & </td>
|
||
<td class="paramname"><em>id</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060">EFindSeqOption</a> </td>
|
||
<td class="paramname"><em>find_option</em> = <code><a class="el" href="classCGC__Assembly.html#a75492ab26cf665f370a435fe75afc060aedac199f5851cd7ca0602ccf707ecef3">eEnforceSingle</a></code> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Find a single sequence corresponding to the supplied id. </p>
|
||
<p>Flag find_option specifies what to do if more than one sequence is found with this id.</p><ul>
|
||
<li>eEnforceSingle: throw an exception. This is the default</li>
|
||
<li>eChooseAny: arbitrarily choose one of the sequences</li>
|
||
<li>eChooseBest: choose the best sequneces available with this id. Criteria are: – Choose a sequence from the reference full assembly in preference to a sequence from another full assembly – Choose a sequence from the primary unit in preference to a sequence from another unit – Choose a top-level sequence in preference to a non-top-level sequence – Choose a scaffold in preference to a component – If there's more than one sequence that's "best" by the above criteria, choose one arbitrarily </li>
|
||
</ul>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00384">384</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00511">CreateIndex()</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00159">eChooseBest</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00157">eEnforceSingle</a>, <a class="el" href="map_8hpp_source.html#l00149">map_checker< Container >::empty()</a>, <a class="el" href="map_8hpp_source.html#l00152">map_checker< Container >::end()</a>, <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="map_8hpp_source.html#l00153">map_checker< Container >::find()</a>, <a class="el" href="remove__sequences__from__alignments_8cpp_source.html#l00084">GetSeqId()</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00195">m_SequenceMap</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a9e992afa3ef570dc8f50df026546cf67"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a9e992afa3ef570dc8f50df026546cf67">◆ </a></span>Find() <span class="overload">[2/2]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::Find </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> & </td>
|
||
<td class="paramname"><em>id</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> & </td>
|
||
<td class="paramname"><em>sequences</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Find all references to a given sequence within an assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00412">412</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00511">CreateIndex()</a>, <a class="el" href="map_8hpp_source.html#l00149">map_checker< Container >::empty()</a>, <a class="el" href="map_8hpp_source.html#l00152">map_checker< Container >::end()</a>, <a class="el" href="map_8hpp_source.html#l00153">map_checker< Container >::find()</a>, and <a class="el" href="GC__Assembly_8hpp_source.html#l00195">m_SequenceMap</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="attached__handles_8cpp_source.html#l00127">CAttachedHandles::Attach()</a>, <a class="el" href="gui_2objutils_2utils_8cpp_source.html#l01411">CSeqUtils::GetChrGI()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00425">GetRepliconTypeLocRole()</a>, and <a class="el" href="tabular__fmt_8cpp_source.html#l02365">s_FindGaps()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a31ec76e58955a2c3c85bf82e4393042e"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a31ec76e58955a2c3c85bf82e4393042e">◆ </a></span>GetAccession()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetAccession </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the accession for this assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00099">99</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00077">x_GetId()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="assembly__object__loader_8cpp_source.html#l00080">CAssemblyObjectLoader::Execute()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00113">GetBestIdentifier()</a>, <a class="el" href="gencoll__svc_8cpp_source.html#l00069">CGencollSvc::GetGCAssembly()</a>, <a class="el" href="assembly__info_8cpp_source.html#l00428">CAssemblyInfo::IsSameAssembly()</a>, <a class="el" href="tabular__fmt_8cpp_source.html#l02175">CTabularFormatter_AssemblyInfo::Print()</a>, <a class="el" href="gui_2objutils_2utils_8cpp_source.html#l01440">s_GetAssemblySeqIds()</a>, and <a class="el" href="gui_2core_2document_8cpp_source.html#l00149">CGBDocument::x_InitializeAssembly()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a5dbfd3b36bfee7dba1ee1ddb03cc6348"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5dbfd3b36bfee7dba1ee1ddb03cc6348">◆ </a></span>GetAssemblyUnits()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCGC__Assembly.html#a5af4f6facbf1b43a88cabee6c6cef4bc">CGC_Assembly::TAssemblyUnits</a> CGC_Assembly::GetAssemblyUnits </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve a list of all assembly units contained in this assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00266">266</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00266">GetAssemblyUnits()</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00594">CGC_AssemblySet_Base::GetPrimary_assembly()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="ftds100_2freetds_2odbc_2unittests_2utf8_8c_source.html#l00042">tmp</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00266">GetAssemblyUnits()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00290">GetFullAssemblies()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a5d0cd9521f240e0ff26312b9daf9af33"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5d0cd9521f240e0ff26312b9daf9af33">◆ </a></span>GetBestIdentifier()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetBestIdentifier </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Either accession or submitter-provided id. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00113">113</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00099">GetAccession()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00119">x_GetSubmitterId()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aa934cfa13ff193ce9c155a731537ad89"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aa934cfa13ff193ce9c155a731537ad89">◆ </a></span>GetDesc()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__AssemblyDesc.html">CGC_AssemblyDesc</a> & CGC_Assembly::GetDesc </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the full set of assembly descriptors. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00133">133</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00564">CGC_AssemblySet_Base::GetDesc()</a>, <a class="el" href="GC__AssemblyUnit___8hpp_source.html#l00530">CGC_AssemblyUnit_Base::GetDesc()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="basic__converters_8cpp_source.html#l01720">Convert_GC_Assembly_Seq_id()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00176">GetFileSafeName()</a>, <a class="el" href="label_8cpp_source.html#l03381">CGCAsssemblyHandler::GetLabel()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00147">GetName()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00196">GetTaxId()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00234">IsGenBank()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00218">IsRefSeq()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="af4644fc89e5e1acc4c9a807eab9db5c4"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#af4644fc89e5e1acc4c9a807eab9db5c4">◆ </a></span>GetDisplayName()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetDisplayName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Get full label for assmebly; if this is a unit, full assembly name followed by unit name. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00164">164</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblyUnit_8cpp_source.html#l00085">CGC_AssemblyUnit::GetDisplayName()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00147">GetName()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="corelib_2ncbistr_8hpp_source.html#l00123">kEmptyStr</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ab1ca8d034be17783c12ba9d857ea7e51"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ab1ca8d034be17783c12ba9d857ea7e51">◆ </a></span>GetFileSafeDisplayName()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetFileSafeDisplayName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Get file-safe version of full label for assmebly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00184">184</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblyUnit_8cpp_source.html#l00099">CGC_AssemblyUnit::GetFileSafeDisplayName()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00176">GetFileSafeName()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="corelib_2ncbistr_8hpp_source.html#l00123">kEmptyStr</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a5d50397781cc4fa92533cdd537e25ed2"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5d50397781cc4fa92533cdd537e25ed2">◆ </a></span>GetFileSafeName()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetFileSafeName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the file-safe version of assembly name, if available; othwreise default to standard name. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00176">176</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00133">GetDesc()</a>, <a class="el" href="GC__AssemblyDesc___8hpp_source.html#l01123">CGC_AssemblyDesc_Base::GetFilesafe_name()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00147">GetName()</a>, <a class="el" href="GC__AssemblyDesc___8hpp_source.html#l01111">CGC_AssemblyDesc_Base::IsSetFilesafe_name()</a>, and <a class="el" href="ncbistr_8cpp_source.html#l03305">NStr::Replace()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00184">GetFileSafeDisplayName()</a>, and <a class="el" href="GC__AssemblyUnit_8cpp_source.html#l00099">CGC_AssemblyUnit::GetFileSafeDisplayName()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a548449924a57974cbfad38c096a74bde"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a548449924a57974cbfad38c096a74bde">◆ </a></span>GetFullAssemblies()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCGC__Assembly.html#a094c5c7fde223ac4f2225b599f0ce015">CGC_Assembly::TFullAssemblies</a> CGC_Assembly::GetFullAssemblies </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve a list of all full assemblies contained in this assembly Note that, if the assembly is a full assembly, then it will be the only assembly returned; also, if the assembly is not an assembly set, then the base assembly will be returned. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00290">290</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblySet___8hpp_source.html#l00094">CGC_AssemblySet_Base::eSet_type_assembly_set</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00093">CGC_AssemblySet_Base::eSet_type_full_assembly</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00266">GetAssemblyUnits()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="ftds100_2freetds_2odbc_2unittests_2utf8_8c_source.html#l00042">tmp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="acdb681986db82ab1f54ec5fd96874afe"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#acdb681986db82ab1f54ec5fd96874afe">◆ </a></span>GetMolecules()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::GetMolecules </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> & </td>
|
||
<td class="paramname"><em>molecules</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">ESubset</a> </td>
|
||
<td class="paramname"><em>subset</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve a subset of molecules. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00865">865</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00839">s_Extract()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="basic__converters_8cpp_source.html#l01720">Convert_GC_Assembly_Seq_id()</a>, <a class="el" href="basic__converters_8cpp_source.html#l01962">Convert_GC_Assembly_Seq_loc_Chromosomes()</a>, <a class="el" href="basic__converters_8cpp_source.html#l01978">Convert_GC_Assembly_Seq_loc_TopLevel()</a>, <a class="el" href="table__data__gcassembly_8cpp_source.html#l00131">CTableDataGCAssembly::Init()</a>, <a class="el" href="gui_2objutils_2utils_8cpp_source.html#l01440">s_GetAssemblySeqIds()</a>, and <a class="el" href="columnar__vcf__load__manager_8cpp_source.html#l00516">CVcfLoadingJob::x_CreateProjectItems()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a94f51a0f60abddefb46be55f7c195e1b"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a94f51a0f60abddefb46be55f7c195e1b">◆ </a></span>GetMoleculesByUnit()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::GetMoleculesByUnit </td>
|
||
<td>(</td>
|
||
<td class="paramtype">vector< <a class="el" href="classCGC__Assembly.html#aba89644ac22510808fa79519ecb2eb06">TSequenceList</a> > & </td>
|
||
<td class="paramname"><em>molecules</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html#af8b387eed6927a06947f951b76e1bbca">ESubset</a> </td>
|
||
<td class="paramname"><em>subset</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve a subset of molecules separately for each unit, in the same order in which the units are returned by <a class="el" href="classCGC__Assembly.html#a5dbfd3b36bfee7dba1ee1ddb03cc6348" title="Retrieve a list of all assembly units contained in this assembly.">GetAssemblyUnits()</a> </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00871">871</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00839">s_Extract()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a51edce200fa9701fa4aa2bac3c228a24"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a51edce200fa9701fa4aa2bac3c228a24">◆ </a></span>GetName()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::GetName </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the name of this assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00147">147</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00133">GetDesc()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="corelib_2ncbistr_8hpp_source.html#l00123">kEmptyStr</a>, and <a class="el" href="ncbiobj_8hpp_source.html#l01439">CConstRef< C, Locker >::Reset()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="basic__converters_8cpp_source.html#l01720">Convert_GC_Assembly_Seq_id()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00164">GetDisplayName()</a>, <a class="el" href="GC__AssemblyUnit_8cpp_source.html#l00085">CGC_AssemblyUnit::GetDisplayName()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00176">GetFileSafeName()</a>, <a class="el" href="label_8cpp_source.html#l03381">CGCAsssemblyHandler::GetLabel()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00249">IsOrganelle()</a>, <a class="el" href="assembly__info_8cpp_source.html#l00428">CAssemblyInfo::IsSameAssembly()</a>, and <a class="el" href="tabular__fmt_8cpp_source.html#l02175">CTabularFormatter_AssemblyInfo::Print()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="adad15e5fc0a1e96a2b99df9a3b9b1de6"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#adad15e5fc0a1e96a2b99df9a3b9b1de6">◆ </a></span>GetReleaseId()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> CGC_Assembly::GetReleaseId </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the release id for this assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00084">84</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00077">x_GetId()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ad246c89599ff46548d5453806b4b59ca"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ad246c89599ff46548d5453806b4b59ca">◆ </a></span>GetRepliconTypeLocRole()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::GetRepliconTypeLocRole </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> & </td>
|
||
<td class="paramname"><em>id</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
|
||
<td class="paramname"><em>type</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
|
||
<td class="paramname"><em>location</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classset.html">set</a>< <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> > & </td>
|
||
<td class="paramname"><em>role</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Returns replicon type, location and role. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00425">425</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__SequenceRole___8hpp_source.html#l00068">eGC_SequenceRole_chromosome</a>, <a class="el" href="GC__SequenceRole___8hpp_source.html#l00072">eGC_SequenceRole_pseudo_scaffold</a>, <a class="el" href="GC__SequenceRole___8hpp_source.html#l00069">eGC_SequenceRole_scaffold</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00412">Find()</a>, <a class="el" href="util_2debug_2set_8hpp_source.html#l00149">set< Key, Compare >::insert()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="ftds100_2freetds_2tds_2config_8c_source.html#l00097">location</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aea9f591ac6b16f946bfe4f1e582e4d92"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aea9f591ac6b16f946bfe4f1e582e4d92">◆ </a></span>GetTargetSet()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> > CGC_Assembly::GetTargetSet </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Access the top-level target set that this assemhly belongs to. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00877">877</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8hpp_source.html#l00197">m_TargetSet</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a3fdc97341bead60190e2fd4f58b83672"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a3fdc97341bead60190e2fd4f58b83672">◆ </a></span>GetTaxId()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__AppFramework.html#gac1947a5600889669571884ebe66ec0e0">TTaxId</a> CGC_Assembly::GetTaxId </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Retrieve the tax-id for this assembly. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00196">196</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00133">GetDesc()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="ncbiobj_8hpp_source.html#l01439">CConstRef< C, Locker >::Reset()</a>, and <a class="el" href="ncbimisc_8hpp_source.html#l01115">ZERO_TAX_ID</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a4483d90ede0b7bb272ad1ae31fd145f5"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a4483d90ede0b7bb272ad1ae31fd145f5">◆ </a></span>GetUnitClass()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2ff96ef7f111d8fd5315de816ac62eac">CGC_AssemblyUnit::TClass</a> CGC_Assembly::GetUnitClass </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>If this is an assembly unit, get unit class. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00254">254</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblyUnit___8hpp_source.html#l00098">CGC_AssemblyUnit_Base::eClass_other</a>, <a class="el" href="GC__AssemblyUnit___8hpp_source.html#l00490">CGC_AssemblyUnit_Base::GetClass()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, and <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a7abb956fd514fff0a6bf6926dbb0b7bc"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a7abb956fd514fff0a6bf6926dbb0b7bc">◆ </a></span>IsGenBank()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Assembly::IsGenBank </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Is this assembly a GenBank assembly? </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00234">234</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblyDesc___8hpp_source.html#l00095">CGC_AssemblyDesc_Base::eRelease_type_genbank</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00133">GetDesc()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="ncbiobj_8hpp_source.html#l01439">CConstRef< C, Locker >::Reset()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="columnar__vcf__load__manager_8cpp_source.html#l00656">CVcfLoadingJob::x_FindSynonyms()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a39558bb5b2deeda4e5cf9f2d700344ff"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a39558bb5b2deeda4e5cf9f2d700344ff">◆ </a></span>IsOrganelle()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Assembly::IsOrganelle </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Is this a non-nuclear assembly unit? </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00249">249</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00147">GetName()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ab3fc2562b2d448a0879bacee25669b75"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ab3fc2562b2d448a0879bacee25669b75">◆ </a></span>IsRefSeq()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Assembly::IsRefSeq </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Is this assembly a RefSeq assembly? </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00218">218</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblyDesc___8hpp_source.html#l00096">CGC_AssemblyDesc_Base::eRelease_type_refseq</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00133">GetDesc()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="ncbiobj_8hpp_source.html#l01439">CConstRef< C, Locker >::Reset()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="table__annot__data__source_8cpp_source.html#l00367">CTableAnnotDataSource::AddSeqLoc()</a>, <a class="el" href="id__mapper__num__assembly_8cpp_source.html#l00041">CIdMapperNumAssembly::CIdMapperNumAssembly()</a>, <a class="el" href="table__annot__data__source_8cpp_source.html#l01027">CTableAnnotDataSource::CreateFeature()</a>, <a class="el" href="assembly__object__loader_8cpp_source.html#l00080">CAssemblyObjectLoader::Execute()</a>, <a class="el" href="gui_2objutils_2utils_8cpp_source.html#l02880">CGencollIdMapperAdapter::GetIdMapper()</a>, <a class="el" href="basic__converters_8cpp_source.html#l01900">s_GCSeqsToSeqLocs()</a>, and <a class="el" href="mapping__object__loader_8cpp_source.html#l00050">CMappingObjectLoader::x_CreateMapper()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a6f03a2dfe8140d55989c88e598980634"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a6f03a2dfe8140d55989c88e598980634">◆ </a></span>IsTargetSetReference()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Assembly::IsTargetSetReference </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>Is this assembly the reference assembly of the target set, or part of it? </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00882">882</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__AssemblySet___8hpp_source.html#l00094">CGC_AssemblySet_Base::eSet_type_assembly_set</a>, <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__AssemblyUnit_8cpp_source.html#l00126">CGC_AssemblyUnit::GetFullAssembly()</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00594">CGC_AssemblySet_Base::GetPrimary_assembly()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00882">IsTargetSetReference()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="GC__Assembly_8hpp_source.html#l00197">m_TargetSet</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00882">IsTargetSetReference()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="afad855ac2a649de87b1ce20f761fb856"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#afad855ac2a649de87b1ce20f761fb856">◆ </a></span>operator=()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a>& CGC_Assembly::operator= </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td>
|
||
<td class="paramname"><em>value</em></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a705965053b5a32d72463fbe0f33a0e45"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a705965053b5a32d72463fbe0f33a0e45">◆ </a></span>PostRead()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::PostRead </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00454">454</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly_8cpp_source.html#l00460">CreateHierarchy()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a67f774278fb4aff84ba447c84b40e70c"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a67f774278fb4aff84ba447c84b40e70c">◆ </a></span>PreWrite()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::PreWrite </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p><a class="el" href="classCGC__Assembly.html#a67f774278fb4aff84ba447c84b40e70c" title="PreWrite() / PostRead() handle events for indexing of local structures.">PreWrite()</a> / <a class="el" href="classCGC__Assembly.html#a705965053b5a32d72463fbe0f33a0e45">PostRead()</a> handle events for indexing of local structures. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00450">450</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ab0e9bbaca7ceaf4612d756b88e1e4785"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ab0e9bbaca7ceaf4612d756b88e1e4785">◆ </a></span>x_GetId()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCDbtag.html">CDbtag</a> > > & CGC_Assembly::x_GetId </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00077">77</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00124">CGC_Assembly_Base::GetAssembly_set()</a>, <a class="el" href="GC__AssemblySet___8hpp_source.html#l00445">CGC_AssemblySet_Base::GetId()</a>, <a class="el" href="GC__AssemblyUnit___8hpp_source.html#l00458">CGC_AssemblyUnit_Base::GetId()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00099">GetAccession()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00084">GetReleaseId()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00119">x_GetSubmitterId()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a4b32582ecb2253e85d9a82d3636c3127"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a4b32582ecb2253e85d9a82d3636c3127">◆ </a></span>x_GetSubmitterId()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Assembly::x_GetSubmitterId </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00119">119</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00077">x_GetId()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00113">GetBestIdentifier()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aa6007b69e8eb197c7f145dd9f10cb488"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aa6007b69e8eb197c7f145dd9f10cb488">◆ </a></span>x_Index() <span class="overload">[1/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td>
|
||
<td class="paramname"><em>assm</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> & </td>
|
||
<td class="paramname"><em>replicon</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>indexing infrastructure </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00605">605</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Replicon___8hpp_source.html#l00559">CGC_Replicon_Base::GetSequence()</a>, <a class="el" href="GC__Replicon___8hpp_source.html#l00427">CGC_Replicon_Base::C_Sequence::IsSingle()</a>, <a class="el" href="GC__Replicon_8hpp_source.html#l00077">CGC_Replicon::m_Assembly</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, and <a class="el" href="GC__Replicon___8cpp_source.html#l00173">CGC_Replicon_Base::SetSequence()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00460">CreateHierarchy()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00567">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a2148181e8034b0c92c258a90273f7bdc"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a2148181e8034b0c92c258a90273f7bdc">◆ </a></span>x_Index() <span class="overload">[2/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td>
|
||
<td class="paramname"><em>assm</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>seq</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00623">623</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00130">CGC_Sequence::m_Assembly</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00635">CGC_Sequence_Base::SetSequences()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a48160036dc2541d57f5f8a2d66f25c2c"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a48160036dc2541d57f5f8a2d66f25c2c">◆ </a></span>x_Index() <span class="overload">[3/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> & </td>
|
||
<td class="paramname"><em>root</em></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00567">567</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Assembly___8cpp_source.html#l00102">CGC_Assembly_Base::GetUnit()</a>, <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00266">CGC_Assembly_Base::IsAssembly_set()</a>, <a class="el" href="GC__Assembly___8hpp_source.html#l00260">CGC_Assembly_Base::IsUnit()</a>, <a class="el" href="GC__AssemblyUnit_8hpp_source.html#l00097">CGC_AssemblyUnit::m_Assembly</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00130">CGC_Assembly_Base::SetAssembly_set()</a>, <a class="el" href="GC__Assembly___8cpp_source.html#l00108">CGC_Assembly_Base::SetUnit()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a771547c86d419698df0ca48aa030d99e"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a771547c86d419698df0ca48aa030d99e">◆ </a></span>x_Index() <span class="overload">[4/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> & </td>
|
||
<td class="paramname"><em>unit</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> & </td>
|
||
<td class="paramname"><em>replicon</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00638">638</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__TaggedSequences___8hpp_source.html#l00091">CGC_TaggedSequences_Base::eState_placed</a>, <a class="el" href="GC__Replicon___8hpp_source.html#l00559">CGC_Replicon_Base::GetSequence()</a>, <a class="el" href="GC__Replicon___8hpp_source.html#l00427">CGC_Replicon_Base::C_Sequence::IsSingle()</a>, <a class="el" href="GC__Replicon_8hpp_source.html#l00078">CGC_Replicon::m_AssemblyUnit</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00134">CGC_Sequence::m_ParentRel</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Replicon___8cpp_source.html#l00173">CGC_Replicon_Base::SetSequence()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aefaaa3dec104746ecdf6f90f92862521"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aefaaa3dec104746ecdf6f90f92862521">◆ </a></span>x_Index() <span class="overload">[5/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> & </td>
|
||
<td class="paramname"><em>unit</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>seq</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00662">662</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00131">CGC_Sequence::m_AssemblyUnit</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00635">CGC_Sequence_Base::SetSequences()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a74b56580572ac06f87c7456bd43aad7e"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a74b56580572ac06f87c7456bd43aad7e">◆ </a></span>x_Index() <span class="overload">[6/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> & </td>
|
||
<td class="paramname"><em>replicon</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>seq</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00678">678</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00132">CGC_Sequence::m_Replicon</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00635">CGC_Sequence_Base::SetSequences()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a78ab430ea8ce9ddd1d967fba33114a8e"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a78ab430ea8ce9ddd1d967fba33114a8e">◆ </a></span>x_Index() <span class="overload">[7/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>parent</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>seq</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td>
|
||
<td class="paramname"><em>relation</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00693">693</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00134">CGC_Sequence::m_ParentRel</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00133">CGC_Sequence::m_ParentSequence</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00635">CGC_Sequence_Base::SetSequences()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a10518e5efb62c432839842e7a1d039e9"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a10518e5efb62c432839842e7a1d039e9">◆ </a></span>x_Index() <span class="overload">[8/8]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">void CGC_Assembly::x_Index </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>seq</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td>
|
||
<td class="paramname"><em>relation</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8cpp_source.html#l00709">709</a> of file <a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="lex_8newick_8cpp_source.html#l01456">i</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00617">CGC_Sequence_Base::IsSetSequences()</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00134">CGC_Sequence::m_ParentRel</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00133">CGC_Sequence::m_ParentSequence</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00635">CGC_Sequence_Base::SetSequences()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00605">x_Index()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Data Documentation</h2>
|
||
<a id="a85bd30b9155b031f6f2de98d10e937f4"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a85bd30b9155b031f6f2de98d10e937f4">◆ </a></span>m_Mutex</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCMutex.html">CMutex</a> CGC_Assembly::m_Mutex</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00193">193</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00511">CreateIndex()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="acd9f291cae4e40bfb56e89917d9a342d"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#acd9f291cae4e40bfb56e89917d9a342d">◆ </a></span>m_SequenceMap</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCGC__Assembly.html#abfb8768edf19e551c5248f60e6dadef6">TSequenceIndex</a> CGC_Assembly::m_SequenceMap</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00195">195</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00511">CreateIndex()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00384">Find()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="ac52a1ca5dbb90f9540db4fb9dbb9112c"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ac52a1ca5dbb90f9540db4fb9dbb9112c">◆ </a></span>m_TargetSet</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a>* CGC_Assembly::m_TargetSet</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Assembly_8hpp_source.html#l00197">197</a> of file <a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00460">CreateHierarchy()</a>, <a class="el" href="GC__Assembly_8cpp_source.html#l00877">GetTargetSet()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00882">IsTargetSetReference()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<hr/>The documentation for this class was generated from the following files:<ul>
|
||
<li>include/objects/genomecoll/<a class="el" href="GC__Assembly_8hpp_source.html">GC_Assembly.hpp</a></li>
|
||
<li>src/objects/genomecoll/<a class="el" href="GC__Assembly_8cpp_source.html">GC_Assembly.cpp</a></li>
|
||
</ul>
|
||
</div><!-- contents -->
|
||
<!-- start footer part -->
|
||
<hr class="footer"/><address class="footer"><small>
|
||
Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
|
||
</small></address>
|
||
<address style="align: right;"><small>Modified on Fri Sep 20 14:58:07 2024 by modify_doxy.py rev. 669887</small></address>
|
||
</body>
|
||
</html>
|