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<title>NCBI C++ ToolKit: CBlastOptionsHandle Class Reference</title>
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<a href="#pub-types">Public Types</a> &#124;
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pro-methods">Protected Member Functions</a> &#124;
<a href="#pro-attribs">Protected Attributes</a> &#124;
<a href="classCBlastOptionsHandle-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">CBlastOptionsHandle Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span><div class="ingroups"><a class="el" href="group__ALGO.html">ALGORITHMS</a> &raquo; <a class="el" href="group__AlgoBlast.html">BLAST (Basic Local Alignment Search Tool)</a></div></div> </div>
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<p>
<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CBlastOptionsHandle">Search Toolkit Book for <i>CBlastOptionsHandle</i></a>
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<p>Handle to the options to the BLAST algorithm.
<a href="classCBlastOptionsHandle.html#details">More...</a></p>
<p><code>#include &lt;<a class="el" href="blast__options__handle_8hpp_source.html">algo/blast/api/blast_options_handle.hpp</a>&gt;</code></p>
<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CBlastOptionsHandle:</div>
<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
<div class="center"><img src="img__inherit__graph/classCBlastOptionsHandle__inherit__graph.png" border="0" usemap="#aCBlastOptionsHandle_inherit__map" alt="Inheritance graph"/></div>
<map name="aCBlastOptionsHandle_inherit__map" id="aCBlastOptionsHandle_inherit__map">
<area shape="rect" title="Handle to the options to the BLAST algorithm." alt="" coords="301,224,449,251"/>
<area shape="rect" href="classCBlastNucleotideOptionsHandle.html" title="Handle to the nucleotide&#45;nucleotide options to the BLAST algorithm." alt="" coords="497,56,708,83"/>
<area shape="rect" href="classCBlastProteinOptionsHandle.html" title="Handle to the protein&#45;protein options to the BLAST algorithm." alt="" coords="508,199,697,225"/>
<area shape="rect" href="classCBlastRPSOptionsHandle.html" title="Handle to the rpsblast options to the BLAST algorithm." alt="" coords="515,249,691,276"/>
<area shape="rect" href="classCMagicBlastOptionsHandle.html" title="Handle to the nucleotide mapping options to the BLAST algorithm." alt="" coords="511,300,694,327"/>
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<area shape="rect" href="classCDiscNucleotideOptionsHandle.html" title="Handle to the nucleotide&#45;nucleotide options to the discontiguous BLAST algorithm." alt="" coords="756,5,963,32"/>
<area shape="rect" href="classCPHIBlastNuclOptionsHandle.html" title="Handle to the nuclein PHI BLAST options." alt="" coords="760,56,959,83"/>
<area shape="rect" href="classCBlastAdvancedProteinOptionsHandle.html" title="Handle to the Advanced BLASTP options." alt="" coords="756,107,963,149"/>
<area shape="rect" href="classCBlastxOptionsHandle.html" title="Handle to the translated nucleotide&#45;protein options to the BLAST algorithm." alt="" coords="782,173,937,200"/>
<area shape="rect" href="classCPHIBlastProtOptionsHandle.html" title="Handle to the protein PHI BLAST options." alt="" coords="762,224,957,251"/>
<area shape="rect" href="classCTBlastxOptionsHandle.html" title="Handle to the translated nucleotide&#45;translated nucleotide options to the BLAST algorithm." alt="" coords="778,275,941,301"/>
<area shape="rect" href="classCBlastpKmerOptionsHandle.html" title="Handle to the KMER BLASTP options." alt="" coords="1011,64,1197,91"/>
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<area shape="rect" href="classCTBlastnOptionsHandle.html" title="Handle to the protein&#45;translated nucleotide options to the BLAST algorithm." alt="" coords="1023,165,1185,192"/>
<area shape="rect" href="classCDeltaBlastOptionsHandle.html" title="Handle to the protein&#45;protein options to the BLAST algorithm." alt="" coords="1245,115,1424,141"/>
<area shape="rect" href="classCRPSTBlastnOptionsHandle.html" title="Handle to the options for translated nucleotide&#45;RPS blast." alt="" coords="764,325,955,352"/>
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CBlastOptionsHandle:</div>
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<div class="center"><img src="img__coll__graph/classCBlastOptionsHandle__coll__graph.png" border="0" usemap="#aCBlastOptionsHandle_coll__map" alt="Collaboration graph"/></div>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:gae8894f418664b9ffc30d75e716b797c8"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">CBlastOptions::EAPILocality</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae8894f418664b9ffc30d75e716b797c8">EAPILocality</a></td></tr>
<tr class="memdesc:gae8894f418664b9ffc30d75e716b797c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience define. <a href="group__AlgoBlast.html#gae8894f418664b9ffc30d75e716b797c8">More...</a><br /></td></tr>
<tr class="separator:gae8894f418664b9ffc30d75e716b797c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
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<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic&lt; <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ga55f3a32a3a56731e11cf7bc366033b29"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga55f3a32a3a56731e11cf7bc366033b29">CBlastOptionsHandle</a> (<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> locality)</td></tr>
<tr class="memdesc:ga55f3a32a3a56731e11cf7bc366033b29"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default c-tor. <a href="group__AlgoBlast.html#ga55f3a32a3a56731e11cf7bc366033b29">More...</a><br /></td></tr>
<tr class="separator:ga55f3a32a3a56731e11cf7bc366033b29"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa9b361bf1d476216378da8fecbab960f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa9b361bf1d476216378da8fecbab960f">Validate</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaa9b361bf1d476216378da8fecbab960f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validate the options contained in this object. <a href="group__AlgoBlast.html#gaa9b361bf1d476216378da8fecbab960f">More...</a><br /></td></tr>
<tr class="separator:gaa9b361bf1d476216378da8fecbab960f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga8eff7539c027b3bec0f399e6406bd23c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8eff7539c027b3bec0f399e6406bd23c">GetOptions</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga8eff7539c027b3bec0f399e6406bd23c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return the object which this object is a handle for. <a href="group__AlgoBlast.html#ga8eff7539c027b3bec0f399e6406bd23c">More...</a><br /></td></tr>
<tr class="separator:ga8eff7539c027b3bec0f399e6406bd23c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5b6928ce3ef8ef99b60cd372264854cc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptions.html">CBlastOptions</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5b6928ce3ef8ef99b60cd372264854cc">SetOptions</a> ()</td></tr>
<tr class="memdesc:ga5b6928ce3ef8ef99b60cd372264854cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns a reference to the internal options class which this object is a handle for. <a href="group__AlgoBlast.html#ga5b6928ce3ef8ef99b60cd372264854cc">More...</a><br /></td></tr>
<tr class="separator:ga5b6928ce3ef8ef99b60cd372264854cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad5ab4aa2742056f754dfe7262c908724"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad5ab4aa2742056f754dfe7262c908724">SetDefaults</a> ()</td></tr>
<tr class="memdesc:gad5ab4aa2742056f754dfe7262c908724"><td class="mdescLeft">&#160;</td><td class="mdescRight">Resets the state of the object to all default values. <a href="group__AlgoBlast.html#gad5ab4aa2742056f754dfe7262c908724">More...</a><br /></td></tr>
<tr class="separator:gad5ab4aa2742056f754dfe7262c908724"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2251f8facc0127b9efb0a428e1f0a67f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2251f8facc0127b9efb0a428e1f0a67f">DoneDefaults</a> ()</td></tr>
<tr class="memdesc:ga2251f8facc0127b9efb0a428e1f0a67f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns true if this object needs default values set. <a href="group__AlgoBlast.html#ga2251f8facc0127b9efb0a428e1f0a67f">More...</a><br /></td></tr>
<tr class="separator:ga2251f8facc0127b9efb0a428e1f0a67f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad278bde0ef4535931e516e84cc2e8cdc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad278bde0ef4535931e516e84cc2e8cdc">GetWindowSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gad278bde0ef4535931e516e84cc2e8cdc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns WindowSize. <a href="group__AlgoBlast.html#gad278bde0ef4535931e516e84cc2e8cdc">More...</a><br /></td></tr>
<tr class="separator:gad278bde0ef4535931e516e84cc2e8cdc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9063e9f8369353466a0d15c906cfe9fc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9063e9f8369353466a0d15c906cfe9fc">SetWindowSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ws)</td></tr>
<tr class="memdesc:ga9063e9f8369353466a0d15c906cfe9fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets WindowSize. <a href="group__AlgoBlast.html#ga9063e9f8369353466a0d15c906cfe9fc">More...</a><br /></td></tr>
<tr class="separator:ga9063e9f8369353466a0d15c906cfe9fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga329323fd90c7bab19a7a0b831738fda1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga329323fd90c7bab19a7a0b831738fda1">GetOffDiagonalRange</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:ga329323fd90c7bab19a7a0b831738fda1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gacfabee4047a2da9c36a555b3e27f6d10"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gacfabee4047a2da9c36a555b3e27f6d10">SetOffDiagonalRange</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="njn__localmaxstatutil_8hpp.html#a528746e9ddcc245107c2546995139b42">r</a>)</td></tr>
<tr class="separator:gacfabee4047a2da9c36a555b3e27f6d10"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf0c35edf4f914c8084809c038ecd8793"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf0c35edf4f914c8084809c038ecd8793">ClearFilterOptions</a> ()</td></tr>
<tr class="memdesc:gaf0c35edf4f914c8084809c038ecd8793"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clears the filtering options. <a href="group__AlgoBlast.html#gaf0c35edf4f914c8084809c038ecd8793">More...</a><br /></td></tr>
<tr class="separator:gaf0c35edf4f914c8084809c038ecd8793"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaecf74272b601a0f23240146a5721eec5"><td class="memItemLeft" align="right" valign="top">char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaecf74272b601a0f23240146a5721eec5">GetFilterString</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaecf74272b601a0f23240146a5721eec5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns FilterString. <a href="group__AlgoBlast.html#gaecf74272b601a0f23240146a5721eec5">More...</a><br /></td></tr>
<tr class="separator:gaecf74272b601a0f23240146a5721eec5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gabc5ccfce9d7a046f8c5649e0dc78c537"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabc5ccfce9d7a046f8c5649e0dc78c537">SetFilterString</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi_2driver_2ftds14_2freetds_2utils_2des_8c.html#ab5682fc514f083a7cb16235b1ffd1f5f">f</a>, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> clear=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
<tr class="memdesc:gabc5ccfce9d7a046f8c5649e0dc78c537"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets FilterString. <a href="group__AlgoBlast.html#gabc5ccfce9d7a046f8c5649e0dc78c537">More...</a><br /></td></tr>
<tr class="separator:gabc5ccfce9d7a046f8c5649e0dc78c537"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9367d34a943a87805a7f31e3a5a64cbd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9367d34a943a87805a7f31e3a5a64cbd">GetMaskAtHash</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga9367d34a943a87805a7f31e3a5a64cbd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns whether masking should only be done for lookup table creation. <a href="group__AlgoBlast.html#ga9367d34a943a87805a7f31e3a5a64cbd">More...</a><br /></td></tr>
<tr class="separator:ga9367d34a943a87805a7f31e3a5a64cbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab7f4da26cbeb0ce62f8a23aa6ecb260f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab7f4da26cbeb0ce62f8a23aa6ecb260f">SetMaskAtHash</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
<tr class="memdesc:gab7f4da26cbeb0ce62f8a23aa6ecb260f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets MaskAtHash. <a href="group__AlgoBlast.html#gab7f4da26cbeb0ce62f8a23aa6ecb260f">More...</a><br /></td></tr>
<tr class="separator:gab7f4da26cbeb0ce62f8a23aa6ecb260f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gabd21b4f2b5c337ad16b8fb374d06e592"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabd21b4f2b5c337ad16b8fb374d06e592">GetGapXDropoff</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gabd21b4f2b5c337ad16b8fb374d06e592"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns GapXDropoff. <a href="group__AlgoBlast.html#gabd21b4f2b5c337ad16b8fb374d06e592">More...</a><br /></td></tr>
<tr class="separator:gabd21b4f2b5c337ad16b8fb374d06e592"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab6d1800db635bf322d40a7df84d81309"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab6d1800db635bf322d40a7df84d81309">SetGapXDropoff</a> (double x)</td></tr>
<tr class="memdesc:gab6d1800db635bf322d40a7df84d81309"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets GapXDropoff. <a href="group__AlgoBlast.html#gab6d1800db635bf322d40a7df84d81309">More...</a><br /></td></tr>
<tr class="separator:gab6d1800db635bf322d40a7df84d81309"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga1ecf084768343b7e22a2d5b26a4522f4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1ecf084768343b7e22a2d5b26a4522f4">GetGapTrigger</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga1ecf084768343b7e22a2d5b26a4522f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns GapTrigger. <a href="group__AlgoBlast.html#ga1ecf084768343b7e22a2d5b26a4522f4">More...</a><br /></td></tr>
<tr class="separator:ga1ecf084768343b7e22a2d5b26a4522f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga35205aa3c9179dcb680907fcd6fa2934"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga35205aa3c9179dcb680907fcd6fa2934">SetGapTrigger</a> (double <a class="el" href="thrddgri_8c.html#ac0814c7f6d26f2f867552032d5314c9c">g</a>)</td></tr>
<tr class="memdesc:ga35205aa3c9179dcb680907fcd6fa2934"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets GapTrigger. <a href="group__AlgoBlast.html#ga35205aa3c9179dcb680907fcd6fa2934">More...</a><br /></td></tr>
<tr class="separator:ga35205aa3c9179dcb680907fcd6fa2934"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga3d4e01b80f7fd10454a97549dc98c434"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3d4e01b80f7fd10454a97549dc98c434">GetGapXDropoffFinal</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga3d4e01b80f7fd10454a97549dc98c434"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns GapXDropoffFinal. <a href="group__AlgoBlast.html#ga3d4e01b80f7fd10454a97549dc98c434">More...</a><br /></td></tr>
<tr class="separator:ga3d4e01b80f7fd10454a97549dc98c434"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa34c9d7ac1c95d20b4ef2453901b3cac"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa34c9d7ac1c95d20b4ef2453901b3cac">SetGapXDropoffFinal</a> (double x)</td></tr>
<tr class="memdesc:gaa34c9d7ac1c95d20b4ef2453901b3cac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets GapXDropoffFinal. <a href="group__AlgoBlast.html#gaa34c9d7ac1c95d20b4ef2453901b3cac">More...</a><br /></td></tr>
<tr class="separator:gaa34c9d7ac1c95d20b4ef2453901b3cac"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad5508b3486fc54ee3f81983a3a4ae1c0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad5508b3486fc54ee3f81983a3a4ae1c0">GetHitlistSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gad5508b3486fc54ee3f81983a3a4ae1c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns HitlistSize. <a href="group__AlgoBlast.html#gad5508b3486fc54ee3f81983a3a4ae1c0">More...</a><br /></td></tr>
<tr class="separator:gad5508b3486fc54ee3f81983a3a4ae1c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7a4f08045d489497575c0487c52c028e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7a4f08045d489497575c0487c52c028e">SetHitlistSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
<tr class="memdesc:ga7a4f08045d489497575c0487c52c028e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets HitlistSize. <a href="group__AlgoBlast.html#ga7a4f08045d489497575c0487c52c028e">More...</a><br /></td></tr>
<tr class="separator:ga7a4f08045d489497575c0487c52c028e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga93116c0ac76d330ffd616afb78762fee"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga93116c0ac76d330ffd616afb78762fee">GetMaxNumHspPerSequence</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga93116c0ac76d330ffd616afb78762fee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns MaxNumHspPerSequence. <a href="group__AlgoBlast.html#ga93116c0ac76d330ffd616afb78762fee">More...</a><br /></td></tr>
<tr class="separator:ga93116c0ac76d330ffd616afb78762fee"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad72b6c0d345f3c3030fb6ba6a6e7b0dc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad72b6c0d345f3c3030fb6ba6a6e7b0dc">SetMaxNumHspPerSequence</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
<tr class="memdesc:gad72b6c0d345f3c3030fb6ba6a6e7b0dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets MaxNumHspPerSequence. <a href="group__AlgoBlast.html#gad72b6c0d345f3c3030fb6ba6a6e7b0dc">More...</a><br /></td></tr>
<tr class="separator:gad72b6c0d345f3c3030fb6ba6a6e7b0dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf9e6856a0606c50ba0441ff40c0432d9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf9e6856a0606c50ba0441ff40c0432d9">GetMaxHspsPerSubject</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaf9e6856a0606c50ba0441ff40c0432d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns MaxHspsPerSubjectQueryPair. <a href="group__AlgoBlast.html#gaf9e6856a0606c50ba0441ff40c0432d9">More...</a><br /></td></tr>
<tr class="separator:gaf9e6856a0606c50ba0441ff40c0432d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga74fc1e6ed617ad75931125ef0e6289ef"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga74fc1e6ed617ad75931125ef0e6289ef">SetMaxHspsPerSubject</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
<tr class="memdesc:ga74fc1e6ed617ad75931125ef0e6289ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets MaxHspPerSubjectQueryPair. <a href="group__AlgoBlast.html#ga74fc1e6ed617ad75931125ef0e6289ef">More...</a><br /></td></tr>
<tr class="separator:ga74fc1e6ed617ad75931125ef0e6289ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gafee6f3facc5b6fd306ebbd9dfe29b357"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafee6f3facc5b6fd306ebbd9dfe29b357">GetEvalueThreshold</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gafee6f3facc5b6fd306ebbd9dfe29b357"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns EvalueThreshold. <a href="group__AlgoBlast.html#gafee6f3facc5b6fd306ebbd9dfe29b357">More...</a><br /></td></tr>
<tr class="separator:gafee6f3facc5b6fd306ebbd9dfe29b357"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0f5b08ca4094558b90bd1fac1a0113f5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0f5b08ca4094558b90bd1fac1a0113f5">SetEvalueThreshold</a> (double eval)</td></tr>
<tr class="memdesc:ga0f5b08ca4094558b90bd1fac1a0113f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets EvalueThreshold. <a href="group__AlgoBlast.html#ga0f5b08ca4094558b90bd1fac1a0113f5">More...</a><br /></td></tr>
<tr class="separator:ga0f5b08ca4094558b90bd1fac1a0113f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa595bd6c12f2f25369d2f5cb57ee3880"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa595bd6c12f2f25369d2f5cb57ee3880">GetCutoffScore</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaa595bd6c12f2f25369d2f5cb57ee3880"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns CutoffScore. <a href="group__AlgoBlast.html#gaa595bd6c12f2f25369d2f5cb57ee3880">More...</a><br /></td></tr>
<tr class="separator:gaa595bd6c12f2f25369d2f5cb57ee3880"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae28e9bc38a9be4e821f4474550e17f43"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae28e9bc38a9be4e821f4474550e17f43">SetCutoffScore</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
<tr class="memdesc:gae28e9bc38a9be4e821f4474550e17f43"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets CutoffScore. <a href="group__AlgoBlast.html#gae28e9bc38a9be4e821f4474550e17f43">More...</a><br /></td></tr>
<tr class="separator:gae28e9bc38a9be4e821f4474550e17f43"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga6e159f55add441259f7ae7a73769e00d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6e159f55add441259f7ae7a73769e00d">GetPercentIdentity</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga6e159f55add441259f7ae7a73769e00d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns PercentIdentity. <a href="group__AlgoBlast.html#ga6e159f55add441259f7ae7a73769e00d">More...</a><br /></td></tr>
<tr class="separator:ga6e159f55add441259f7ae7a73769e00d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae01528c97963caf8dca065c9ceb4f74b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae01528c97963caf8dca065c9ceb4f74b">SetPercentIdentity</a> (double p)</td></tr>
<tr class="memdesc:gae01528c97963caf8dca065c9ceb4f74b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets PercentIdentity. <a href="group__AlgoBlast.html#gae01528c97963caf8dca065c9ceb4f74b">More...</a><br /></td></tr>
<tr class="separator:gae01528c97963caf8dca065c9ceb4f74b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab002c49e1de57868aa7af1b79498800f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab002c49e1de57868aa7af1b79498800f">GetQueryCovHspPerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gab002c49e1de57868aa7af1b79498800f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns QueryCovHspPerc. <a href="group__AlgoBlast.html#gab002c49e1de57868aa7af1b79498800f">More...</a><br /></td></tr>
<tr class="separator:gab002c49e1de57868aa7af1b79498800f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga25185d5e45e009172f203f097d83aef1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga25185d5e45e009172f203f097d83aef1">SetQueryCovHspPerc</a> (double p)</td></tr>
<tr class="memdesc:ga25185d5e45e009172f203f097d83aef1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets QueryCovHspPerc. <a href="group__AlgoBlast.html#ga25185d5e45e009172f203f097d83aef1">More...</a><br /></td></tr>
<tr class="separator:ga25185d5e45e009172f203f097d83aef1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga847711132cbcdeea427728032c3ed987"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga847711132cbcdeea427728032c3ed987">GetMinDiagSeparation</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga847711132cbcdeea427728032c3ed987"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns MinDiagSeparation. <a href="group__AlgoBlast.html#ga847711132cbcdeea427728032c3ed987">More...</a><br /></td></tr>
<tr class="separator:ga847711132cbcdeea427728032c3ed987"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga957508564ab5700b0e1c9d5b98a754d5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga957508564ab5700b0e1c9d5b98a754d5">SetMinDiagSeparation</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> d)</td></tr>
<tr class="memdesc:ga957508564ab5700b0e1c9d5b98a754d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets MinDiagSeparation. <a href="group__AlgoBlast.html#ga957508564ab5700b0e1c9d5b98a754d5">More...</a><br /></td></tr>
<tr class="separator:ga957508564ab5700b0e1c9d5b98a754d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga63aa41eb526dac3c38e7f1ce8f0262fc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga63aa41eb526dac3c38e7f1ce8f0262fc">GetGappedMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga63aa41eb526dac3c38e7f1ce8f0262fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns GappedMode. <a href="group__AlgoBlast.html#ga63aa41eb526dac3c38e7f1ce8f0262fc">More...</a><br /></td></tr>
<tr class="separator:ga63aa41eb526dac3c38e7f1ce8f0262fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad9541dbc2881213874a26487f0ac94e3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad9541dbc2881213874a26487f0ac94e3">SetGappedMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
<tr class="memdesc:gad9541dbc2881213874a26487f0ac94e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets GappedMode. <a href="group__AlgoBlast.html#gad9541dbc2881213874a26487f0ac94e3">More...</a><br /></td></tr>
<tr class="separator:gad9541dbc2881213874a26487f0ac94e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaff598fc5b679bc7fa9446b1fc4bdc6d0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaff598fc5b679bc7fa9446b1fc4bdc6d0">GetCullingLimit</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaff598fc5b679bc7fa9446b1fc4bdc6d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns Culling limit. <a href="group__AlgoBlast.html#gaff598fc5b679bc7fa9446b1fc4bdc6d0">More...</a><br /></td></tr>
<tr class="separator:gaff598fc5b679bc7fa9446b1fc4bdc6d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaaa736c7dadde191dd57ca5eafca58e1f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaa736c7dadde191dd57ca5eafca58e1f">SetCullingLimit</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
<tr class="memdesc:gaaa736c7dadde191dd57ca5eafca58e1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets Culling limit. <a href="group__AlgoBlast.html#gaaa736c7dadde191dd57ca5eafca58e1f">More...</a><br /></td></tr>
<tr class="separator:gaaa736c7dadde191dd57ca5eafca58e1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga4e2633cb1fedbd8baa88bf868eb31738"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4e2633cb1fedbd8baa88bf868eb31738">GetMaskLevel</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga4e2633cb1fedbd8baa88bf868eb31738"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns MaskLevel -RMH-. <a href="group__AlgoBlast.html#ga4e2633cb1fedbd8baa88bf868eb31738">More...</a><br /></td></tr>
<tr class="separator:ga4e2633cb1fedbd8baa88bf868eb31738"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gac437855d6cec56f44210668aba7eedb8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac437855d6cec56f44210668aba7eedb8">SetMaskLevel</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ml)</td></tr>
<tr class="memdesc:gac437855d6cec56f44210668aba7eedb8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets MaskLevel -RMH-. <a href="group__AlgoBlast.html#gac437855d6cec56f44210668aba7eedb8">More...</a><br /></td></tr>
<tr class="separator:gac437855d6cec56f44210668aba7eedb8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gafd62e6bf1c9aa5fc07e5d21bfccefe0e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafd62e6bf1c9aa5fc07e5d21bfccefe0e">GetComplexityAdjMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gafd62e6bf1c9aa5fc07e5d21bfccefe0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns Complexity Adjustment Mode -RMH-. <a href="group__AlgoBlast.html#gafd62e6bf1c9aa5fc07e5d21bfccefe0e">More...</a><br /></td></tr>
<tr class="separator:gafd62e6bf1c9aa5fc07e5d21bfccefe0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga3558e70c89e3290647960249944ff818"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3558e70c89e3290647960249944ff818">SetComplexityAdjMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
<tr class="memdesc:ga3558e70c89e3290647960249944ff818"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets ComplexityAdjMode -RMH-. <a href="group__AlgoBlast.html#ga3558e70c89e3290647960249944ff818">More...</a><br /></td></tr>
<tr class="separator:ga3558e70c89e3290647960249944ff818"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaaa090c0657270cc5853e9daedf412af1"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaa090c0657270cc5853e9daedf412af1">GetLowScorePerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaaa090c0657270cc5853e9daedf412af1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns low score percentage for ungapped alignments. <a href="group__AlgoBlast.html#gaaa090c0657270cc5853e9daedf412af1">More...</a><br /></td></tr>
<tr class="separator:gaaa090c0657270cc5853e9daedf412af1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab9466c9e46f01ac0c5c0a59c0e8c8577"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab9466c9e46f01ac0c5c0a59c0e8c8577">SetLowScorePerc</a> (double p)</td></tr>
<tr class="memdesc:gab9466c9e46f01ac0c5c0a59c0e8c8577"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets low score percentage for ungapped alignments. <a href="group__AlgoBlast.html#gab9466c9e46f01ac0c5c0a59c0e8c8577">More...</a><br /></td></tr>
<tr class="separator:gab9466c9e46f01ac0c5c0a59c0e8c8577"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga3da7a99e27b962cfbf8b9e3021413f32"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3da7a99e27b962cfbf8b9e3021413f32">GetDbLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga3da7a99e27b962cfbf8b9e3021413f32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns DbLength. <a href="group__AlgoBlast.html#ga3da7a99e27b962cfbf8b9e3021413f32">More...</a><br /></td></tr>
<tr class="separator:ga3da7a99e27b962cfbf8b9e3021413f32"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga25e4412ffd482f5ea0f90d66b204087b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga25e4412ffd482f5ea0f90d66b204087b">SetDbLength</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> <a class="el" href="ftds14_2freetds_2tds_2iconv_8c.html#a96bbf959016e4411c9e6b9812a8be60a">len</a>)</td></tr>
<tr class="memdesc:ga25e4412ffd482f5ea0f90d66b204087b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets DbLength. <a href="group__AlgoBlast.html#ga25e4412ffd482f5ea0f90d66b204087b">More...</a><br /></td></tr>
<tr class="separator:ga25e4412ffd482f5ea0f90d66b204087b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5987c8c4cbd928d9983de5780ba36246"><td class="memItemLeft" align="right" valign="top">unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5987c8c4cbd928d9983de5780ba36246">GetDbSeqNum</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga5987c8c4cbd928d9983de5780ba36246"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns DbSeqNum. <a href="group__AlgoBlast.html#ga5987c8c4cbd928d9983de5780ba36246">More...</a><br /></td></tr>
<tr class="separator:ga5987c8c4cbd928d9983de5780ba36246"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga33a847ff9fb0fe032981e8fa24335f69"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga33a847ff9fb0fe032981e8fa24335f69">SetDbSeqNum</a> (unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> num)</td></tr>
<tr class="memdesc:ga33a847ff9fb0fe032981e8fa24335f69"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets DbSeqNum. <a href="group__AlgoBlast.html#ga33a847ff9fb0fe032981e8fa24335f69">More...</a><br /></td></tr>
<tr class="separator:ga33a847ff9fb0fe032981e8fa24335f69"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga13dac00be1fa512ee0458fd83dd5715f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga13dac00be1fa512ee0458fd83dd5715f">GetEffectiveSearchSpace</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga13dac00be1fa512ee0458fd83dd5715f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns EffectiveSearchSpace. <a href="group__AlgoBlast.html#ga13dac00be1fa512ee0458fd83dd5715f">More...</a><br /></td></tr>
<tr class="separator:ga13dac00be1fa512ee0458fd83dd5715f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga4f0cd87d58c058174f05cf19843fbaa6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4f0cd87d58c058174f05cf19843fbaa6">SetEffectiveSearchSpace</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> eff)</td></tr>
<tr class="memdesc:ga4f0cd87d58c058174f05cf19843fbaa6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets EffectiveSearchSpace. <a href="group__AlgoBlast.html#ga4f0cd87d58c058174f05cf19843fbaa6">More...</a><br /></td></tr>
<tr class="separator:ga4f0cd87d58c058174f05cf19843fbaa6"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &amp;src)</td></tr>
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &amp;src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mark this object as not allocated in heap &ndash; do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mark this object as allocated in heap &ndash; object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga66707761bd1460db43ee9018220deb75">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define method for dumping debug information. <a href="group__Object.html#ga66707761bd1460db43ee9018220deb75">More...</a><br /></td></tr>
<tr class="separator:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &amp;<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &amp;ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:ga7818813fcb1843d88001d529dbc2fa75"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7818813fcb1843d88001d529dbc2fa75">CBlastOptionsHandle</a> (<a class="el" href="classCRef.html">CRef</a>&lt; <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &gt; opt)</td></tr>
<tr class="memdesc:ga7818813fcb1843d88001d529dbc2fa75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Create Options Handle from Existing <a class="el" href="classCBlastOptions.html" title="Encapsulates ALL the BLAST algorithm&#39;s options.">CBlastOptions</a> Object. <a href="group__AlgoBlast.html#ga7818813fcb1843d88001d529dbc2fa75">More...</a><br /></td></tr>
<tr class="separator:ga7818813fcb1843d88001d529dbc2fa75"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa6e339837f097f21470dab77314b5cb8"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa6e339837f097f21470dab77314b5cb8">SetRemoteProgramAndService_Blast3</a> ()=0</td></tr>
<tr class="memdesc:gaa6e339837f097f21470dab77314b5cb8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the program and service name for remote blast. <a href="group__AlgoBlast.html#gaa6e339837f097f21470dab77314b5cb8">More...</a><br /></td></tr>
<tr class="separator:gaa6e339837f097f21470dab77314b5cb8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2b8f39c4592b9217225ea9727f5edea4"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2b8f39c4592b9217225ea9727f5edea4">SetLookupTableDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga2b8f39c4592b9217225ea9727f5edea4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets LookupTableDefaults. <a href="group__AlgoBlast.html#ga2b8f39c4592b9217225ea9727f5edea4">More...</a><br /></td></tr>
<tr class="separator:ga2b8f39c4592b9217225ea9727f5edea4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga55422bfce2849eca6a7b94017271faba"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga55422bfce2849eca6a7b94017271faba">SetQueryOptionDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga55422bfce2849eca6a7b94017271faba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets QueryOptionDefaults. <a href="group__AlgoBlast.html#ga55422bfce2849eca6a7b94017271faba">More...</a><br /></td></tr>
<tr class="separator:ga55422bfce2849eca6a7b94017271faba"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9b7c1e2d1127fabc61956af5628552d4"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9b7c1e2d1127fabc61956af5628552d4">SetInitialWordOptionsDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga9b7c1e2d1127fabc61956af5628552d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets InitialWordOptionsDefaults. <a href="group__AlgoBlast.html#ga9b7c1e2d1127fabc61956af5628552d4">More...</a><br /></td></tr>
<tr class="separator:ga9b7c1e2d1127fabc61956af5628552d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga300a8c89c83759fc4250d2fb847c0ebf"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga300a8c89c83759fc4250d2fb847c0ebf">SetGappedExtensionDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga300a8c89c83759fc4250d2fb847c0ebf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets GappedExtensionDefaults. <a href="group__AlgoBlast.html#ga300a8c89c83759fc4250d2fb847c0ebf">More...</a><br /></td></tr>
<tr class="separator:ga300a8c89c83759fc4250d2fb847c0ebf"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga1554c26dcf703489f282135af0244a9e"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1554c26dcf703489f282135af0244a9e">SetScoringOptionsDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga1554c26dcf703489f282135af0244a9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets ScoringOptionsDefaults. <a href="group__AlgoBlast.html#ga1554c26dcf703489f282135af0244a9e">More...</a><br /></td></tr>
<tr class="separator:ga1554c26dcf703489f282135af0244a9e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gac7a43ff3597ba9b87ab1491e3a7d81e9"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac7a43ff3597ba9b87ab1491e3a7d81e9">SetHitSavingOptionsDefaults</a> ()=0</td></tr>
<tr class="memdesc:gac7a43ff3597ba9b87ab1491e3a7d81e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets HitSavingOptionsDefaults. <a href="group__AlgoBlast.html#gac7a43ff3597ba9b87ab1491e3a7d81e9">More...</a><br /></td></tr>
<tr class="separator:gac7a43ff3597ba9b87ab1491e3a7d81e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga770751f085545bafa5c49d352438e6bc"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga770751f085545bafa5c49d352438e6bc">SetEffectiveLengthsOptionsDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga770751f085545bafa5c49d352438e6bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets EffectiveLengthsOptionsDefaults. <a href="group__AlgoBlast.html#ga770751f085545bafa5c49d352438e6bc">More...</a><br /></td></tr>
<tr class="separator:ga770751f085545bafa5c49d352438e6bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2f48bea49d61da9186d7c796b029957d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2f48bea49d61da9186d7c796b029957d">SetSubjectSequenceOptionsDefaults</a> ()=0</td></tr>
<tr class="memdesc:ga2f48bea49d61da9186d7c796b029957d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets SubjectSequenceOptionsDefaults. <a href="group__AlgoBlast.html#ga2f48bea49d61da9186d7c796b029957d">More...</a><br /></td></tr>
<tr class="separator:ga2f48bea49d61da9186d7c796b029957d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:ga576f6728f136af83e2102ab5e69d5117"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>&lt; <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga576f6728f136af83e2102ab5e69d5117">m_Opts</a></td></tr>
<tr class="memdesc:ga576f6728f136af83e2102ab5e69d5117"><td class="mdescLeft">&#160;</td><td class="mdescRight">Data type this class controls access to. <a href="group__AlgoBlast.html#ga576f6728f136af83e2102ab5e69d5117">More...</a><br /></td></tr>
<tr class="separator:ga576f6728f136af83e2102ab5e69d5117"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7eb4985ac2cc1dbc716ae3edc66afb7f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7eb4985ac2cc1dbc716ae3edc66afb7f">m_DefaultsMode</a></td></tr>
<tr class="memdesc:ga7eb4985ac2cc1dbc716ae3edc66afb7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set to true when 'remote' options should ignore setters. <a href="group__AlgoBlast.html#ga7eb4985ac2cc1dbc716ae3edc66afb7f">More...</a><br /></td></tr>
<tr class="separator:ga7eb4985ac2cc1dbc716ae3edc66afb7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
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Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &amp;<a class="el" href="structtype.html">type</a>)</td></tr>
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/>&#160;Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 &lt;&lt; 0</td></tr>
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 &lt;&lt; 1</td></tr>
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 &lt;&lt; 2</td></tr>
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) &lt;&lt; (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Handle to the options to the BLAST algorithm. </p>
<p>This abstract base class only defines those options that are truly "universal" BLAST options (they apply to all flavors of BLAST).</p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="blast_opts_cookbook.html">C++ BLAST Options Cookbook</a> <a class="el" href="blast_opts_cpp_design.html">C++ BLAST Options Design</a></dd></dl>
<dl class="section invariant"><dt>Invariant</dt><dd>Derived classes define options that are applicable only to those programs whose options they manipulate. </dd></dl>
<p class="definition">Definition at line <a class="el" href="blast__options__handle_8hpp_source.html#l00141">141</a> of file <a class="el" href="blast__options__handle_8hpp_source.html">blast_options_handle.hpp</a>.</p>
</div><hr/>The documentation for this class was generated from the following files:<ul>
<li>include/algo/blast/api/<a class="el" href="blast__options__handle_8hpp_source.html">blast_options_handle.hpp</a></li>
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