1249 lines
173 KiB
HTML
1249 lines
173 KiB
HTML
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<meta name="generator" content="Doxygen 1.9.0"/>
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<title>NCBI C++ ToolKit: CBioseq Class Reference</title>
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<td id="projectalign" style="padding-left: 0.5em;">
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<div id="projectname">NCBI C++ ToolKit
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</div>
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</td>
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</tr>
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</tbody>
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/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
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$(function() {
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initMenu('',true,true,'/toolkit/','Search');
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});
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/* @license-end */</script>
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<div id="main-nav"></div>
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</div><!-- top -->
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<div class="header">
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<div class="summary">
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<a href="#pub-types">Public Types</a> |
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pro-methods">Protected Member Functions</a> |
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<a href="#pri-types">Private Types</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="#pri-static-methods">Static Private Member Functions</a> |
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<a href="#pri-attribs">Private Attributes</a> |
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<a href="#pri-static-attribs">Static Private Attributes</a> |
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<a href="#friends">Friends</a> |
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<a href="classCBioseq-members.html">List of all members</a> </div>
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<div class="headertitle">
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<div class="title">CBioseq Class Reference</div> </div>
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</div><!--header-->
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<div class="contents">
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<p>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CBioseq">Search Toolkit Book for <i>CBioseq</i></a>
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</p>
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<p><code>#include <<a class="el" href="Bioseq_8hpp_source.html">objects/seq/Bioseq.hpp</a>></code></p>
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<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CBioseq:</div>
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<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__inherit__graph/classCBioseq__inherit__graph.png" border="0" usemap="#aCBioseq_inherit__map" alt="Inheritance graph"/></div>
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<map name="aCBioseq_inherit__map" id="aCBioseq_inherit__map">
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<area shape="rect" title=" " alt="" coords="101,304,173,331"/>
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<area shape="rect" href="classCBioseq__Base.html" title="*** Sequence ******************************** *" alt="" coords="15,229,125,256"/>
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<area shape="rect" href="classCSerialObject.html" title="Base class for all serializable objects." alt="" coords="19,155,121,181"/>
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<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="35,80,105,107"/>
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</map>
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CBioseq:</div>
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<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-1-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__coll__graph/classCBioseq__coll__graph.png" border="0" usemap="#aCBioseq_coll__map" alt="Collaboration graph"/></div>
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<map name="aCBioseq_coll__map" id="aCBioseq_coll__map">
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<area shape="rect" title=" " alt="" coords="133,557,205,584"/>
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<area shape="rect" href="classCBioseq__Base.html" title="*** Sequence ******************************** *" alt="" coords="358,468,467,495"/>
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
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Public Types</h2></td></tr>
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||
<tr class="memitem:a47f9fffbed0cb715f49286de83c73730"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730">ELabelType</a> { <a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730ad7516890581e6c7826e5fb89141a0484">eType</a>
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, <a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730a893b2069aa3b2e3a712c979ef846c6d5">eContent</a>
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, <a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730af97e9c88c510af03fc481621e66e491e">eBoth</a>
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||
}</td></tr>
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<tr class="separator:a47f9fffbed0cb715f49286de83c73730"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_types_classCBioseq__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCBioseq__Base')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCBioseq__Base.html">CBioseq_Base</a></td></tr>
|
||
<tr class="memitem:gac92d9d89317ea8493446a69db71a5465 inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">enum class  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gac92d9d89317ea8493446a69db71a5465">E_memberIndex</a> { <br />
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  <a class="el" href="group__dataspec__NCBI__Sequence.html#ggac92d9d89317ea8493446a69db71a5465ad2c4d82f7037e318e1aa6f58d06bd153">e__allMandatory</a> = 0
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, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggac92d9d89317ea8493446a69db71a5465a71d0735f755f8f34960e4a40ab86a368">e_id</a>
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, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggac92d9d89317ea8493446a69db71a5465acb6d5a0e3244a150f58402ea929e5b95">e_descr</a>
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||
, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggac92d9d89317ea8493446a69db71a5465a07128f8623e3f2683088656d7aea303a">e_inst</a>
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||
, <br />
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  <a class="el" href="group__dataspec__NCBI__Sequence.html#ggac92d9d89317ea8493446a69db71a5465afde1eb1b8698d107b7a5cbdb0e781e55">e_annot</a>
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||
<br />
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||
}</td></tr>
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||
<tr class="separator:gac92d9d89317ea8493446a69db71a5465 inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga6a4e0b5fd726a07aba85f50653490ebe inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSeq__id.html">CSeq_id</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga6a4e0b5fd726a07aba85f50653490ebe">TId</a></td></tr>
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<tr class="separator:ga6a4e0b5fd726a07aba85f50653490ebe inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf98fb7c0832830177e1f3e300e80749b inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSeq__descr.html">CSeq_descr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaf98fb7c0832830177e1f3e300e80749b">TDescr</a></td></tr>
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<tr class="separator:gaf98fb7c0832830177e1f3e300e80749b inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gab724969c72c19ff47eef13111a45dddd inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSeq__inst.html">CSeq_inst</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gab724969c72c19ff47eef13111a45dddd">TInst</a></td></tr>
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<tr class="separator:gab724969c72c19ff47eef13111a45dddd inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabf5df64f40ea266180c6f286667d4c25 inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSeq__annot.html">CSeq_annot</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gabf5df64f40ea266180c6f286667d4c25">TAnnot</a></td></tr>
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||
<tr class="separator:gabf5df64f40ea266180c6f286667d4c25 inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9f2c06f35ae7e10f2291c6848c3288b0 inherit pub_types_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSerialObject_1_1CMemberIndex.html">Tparent::CMemberIndex</a>< <a class="el" href="group__dataspec__NCBI__Sequence.html#gac92d9d89317ea8493446a69db71a5465">E_memberIndex</a>, 5 > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9f2c06f35ae7e10f2291c6848c3288b0">TmemberIndex</a></td></tr>
|
||
<tr class="separator:ga9f2c06f35ae7e10f2291c6848c3288b0 inherit pub_types_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
|
||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
|
||
Public Member Functions</h2></td></tr>
|
||
<tr class="memitem:abe7d9317d07ba462ead09ac1d18290ac"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#abe7d9317d07ba462ead09ac1d18290ac">CBioseq</a> (void)</td></tr>
|
||
<tr class="separator:abe7d9317d07ba462ead09ac1d18290ac"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa1ded558c21e9f2290cae5939e47052d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#aa1ded558c21e9f2290cae5939e47052d">~CBioseq</a> (void)</td></tr>
|
||
<tr class="separator:aa1ded558c21e9f2290cae5939e47052d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a055ca3aa6193bf523513f77fc7da8cdb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__entry.html">CSeq_entry</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a055ca3aa6193bf523513f77fc7da8cdb">GetParentEntry</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a055ca3aa6193bf523513f77fc7da8cdb"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a48510bc31acea8784a1480a0f1eea06e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCBioseq__set.html">CBioseq_set</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a48510bc31acea8784a1480a0f1eea06e">GetParentSet</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a48510bc31acea8784a1480a0f1eea06e"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a49f09b54ed2a329cd23b726f73b32587"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeqdesc.html">CSeqdesc</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a49f09b54ed2a329cd23b726f73b32587">GetClosestDescriptor</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga9727e4daff612af12779888e4fd6b5b6">CSeqdesc::E_Choice</a> choice, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> *level=<a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a49f09b54ed2a329cd23b726f73b32587"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a797209fe0ed7d7edda682c29098e3210"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a797209fe0ed7d7edda682c29098e3210">CBioseq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> &loc, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &str_id=<a class="el" href="group__String.html#ga22e230174d0eec8c98ef37f69f263afb">kEmptyStr</a>)</td></tr>
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<tr class="separator:a797209fe0ed7d7edda682c29098e3210"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a6658c00f90daa5e1194d77ee0f0d78a9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a6658c00f90daa5e1194d77ee0f0d78a9">GetLabel</a> (<a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> *<a class="el" href="group__auth.html#ga430baa7a733a1418dd4283c85b0e1fe7">label</a>, <a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730">ELabelType</a> <a class="el" href="structtype.html">type</a>, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> worst=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a6658c00f90daa5e1194d77ee0f0d78a9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3368176496056f9eb312de7e85b40c26"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a3368176496056f9eb312de7e85b40c26">GetFirstId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a3368176496056f9eb312de7e85b40c26"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a1692d423c03bed5afd586942c5dd2d07"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a1692d423c03bed5afd586942c5dd2d07">GetNonLocalId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a1692d423c03bed5afd586942c5dd2d07"><td class="mdescLeft"> </td><td class="mdescRight">Find a non-local ID if present, consulting assembly details if all IDs for the overall sequence are local. <a href="classCBioseq.html#a1692d423c03bed5afd586942c5dd2d07">More...</a><br /></td></tr>
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<tr class="separator:a1692d423c03bed5afd586942c5dd2d07"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a6a94dc1e7be45113797deb13364e3380"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a6a94dc1e7be45113797deb13364e3380">GetLocalId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a6a94dc1e7be45113797deb13364e3380"><td class="mdescLeft"> </td><td class="mdescRight">Find a local ID if present. <a href="classCBioseq.html#a6a94dc1e7be45113797deb13364e3380">More...</a><br /></td></tr>
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<tr class="separator:a6a94dc1e7be45113797deb13364e3380"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ab3ecb5fdfdf1523216d62f7a3713e113"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#ab3ecb5fdfdf1523216d62f7a3713e113">IsNa</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ab3ecb5fdfdf1523216d62f7a3713e113"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ab81bb76d3d6cdded8ae2ab48ad6cf73a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#ab81bb76d3d6cdded8ae2ab48ad6cf73a">IsAa</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ab81bb76d3d6cdded8ae2ab48ad6cf73a"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a703a9c67111b5341678df03019ee38e8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#gac1947a5600889669571884ebe66ec0e0">TTaxId</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a703a9c67111b5341678df03019ee38e8">GetTaxId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a703a9c67111b5341678df03019ee38e8"><td class="mdescLeft"> </td><td class="mdescRight">Determine the tax-id for this bioseq. <a href="classCBioseq.html#a703a9c67111b5341678df03019ee38e8">More...</a><br /></td></tr>
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<tr class="separator:a703a9c67111b5341678df03019ee38e8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a6a80609c84198848fb70f4aacac5d9bf"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a6a80609c84198848fb70f4aacac5d9bf">IsSetLength</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a6a80609c84198848fb70f4aacac5d9bf"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a5d94344250c9a0d2397bf3b800b3497a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a5d94344250c9a0d2397bf3b800b3497a">GetLength</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a5d94344250c9a0d2397bf3b800b3497a"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a847822ed23ec546cb24b9f1a13065a52"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a847822ed23ec546cb24b9f1a13065a52">PackAsDeltaSeq</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> gaps_ok=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memdesc:a847822ed23ec546cb24b9f1a13065a52"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="namespaceConvert.html">Convert</a> a raw nucleotide sequence with occasional ambiguities or gaps into a tighter (but somewhat more complex) delta-seq representation. <a href="classCBioseq.html#a847822ed23ec546cb24b9f1a13065a52">More...</a><br /></td></tr>
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<tr class="separator:a847822ed23ec546cb24b9f1a13065a52"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCBioseq__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCBioseq__Base')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCBioseq__Base.html">CBioseq_Base</a></td></tr>
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<tr class="memitem:ga386c1461f5dc783dc71c4fc2529e718c inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga386c1461f5dc783dc71c4fc2529e718c">CBioseq_Base</a> (void)</td></tr>
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<tr class="separator:ga386c1461f5dc783dc71c4fc2529e718c inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7a7bd909667b15581b69ee064985f0d4 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga7a7bd909667b15581b69ee064985f0d4">~CBioseq_Base</a> (void)</td></tr>
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<tr class="separator:ga7a7bd909667b15581b69ee064985f0d4 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9fad98c5a6b9a051e41e5318facc970f inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9fad98c5a6b9a051e41e5318facc970f">DECLARE_INTERNAL_TYPE_INFO</a> ()</td></tr>
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<tr class="separator:ga9fad98c5a6b9a051e41e5318facc970f inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gabb69b984b1e2b3300458cbbf912cd95b inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gabb69b984b1e2b3300458cbbf912cd95b">IsSetId</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gabb69b984b1e2b3300458cbbf912cd95b inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">equivalent identifiers <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Id data member. <a href="group__dataspec__NCBI__Sequence.html#gabb69b984b1e2b3300458cbbf912cd95b">More...</a><br /></td></tr>
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<tr class="separator:gabb69b984b1e2b3300458cbbf912cd95b inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9c46f3256e15752009dd356006260a5c inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9c46f3256e15752009dd356006260a5c">CanGetId</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9c46f3256e15752009dd356006260a5c inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetId method. <a href="group__dataspec__NCBI__Sequence.html#ga9c46f3256e15752009dd356006260a5c">More...</a><br /></td></tr>
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<tr class="separator:ga9c46f3256e15752009dd356006260a5c inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga19d138e23f15195762c49497eb4633be inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga19d138e23f15195762c49497eb4633be">ResetId</a> (void)</td></tr>
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<tr class="memdesc:ga19d138e23f15195762c49497eb4633be inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Id data member. <a href="group__dataspec__NCBI__Sequence.html#ga19d138e23f15195762c49497eb4633be">More...</a><br /></td></tr>
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<tr class="separator:ga19d138e23f15195762c49497eb4633be inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga4feb8e604e855f7e73688d018b6b769e inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__Sequence.html#ga6a4e0b5fd726a07aba85f50653490ebe">TId</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga4feb8e604e855f7e73688d018b6b769e">GetId</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga4feb8e604e855f7e73688d018b6b769e inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Id member data. <a href="group__dataspec__NCBI__Sequence.html#ga4feb8e604e855f7e73688d018b6b769e">More...</a><br /></td></tr>
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<tr class="separator:ga4feb8e604e855f7e73688d018b6b769e inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga10339ed88becfdd843afcc7c4fa39b58 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga6a4e0b5fd726a07aba85f50653490ebe">TId</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga10339ed88becfdd843afcc7c4fa39b58">SetId</a> (void)</td></tr>
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<tr class="memdesc:ga10339ed88becfdd843afcc7c4fa39b58 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Id data member. <a href="group__dataspec__NCBI__Sequence.html#ga10339ed88becfdd843afcc7c4fa39b58">More...</a><br /></td></tr>
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<tr class="separator:ga10339ed88becfdd843afcc7c4fa39b58 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9586cc8c189dd158a17626c4e595bf43 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9586cc8c189dd158a17626c4e595bf43">IsSetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9586cc8c189dd158a17626c4e595bf43 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">descriptors <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Descr data member. <a href="group__dataspec__NCBI__Sequence.html#ga9586cc8c189dd158a17626c4e595bf43">More...</a><br /></td></tr>
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<tr class="separator:ga9586cc8c189dd158a17626c4e595bf43 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga582b44e79878aecf8eab75b348c0e27b inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga582b44e79878aecf8eab75b348c0e27b">CanGetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga582b44e79878aecf8eab75b348c0e27b inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetDescr method. <a href="group__dataspec__NCBI__Sequence.html#ga582b44e79878aecf8eab75b348c0e27b">More...</a><br /></td></tr>
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<tr class="separator:ga582b44e79878aecf8eab75b348c0e27b inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga160d2ce0296b1af16250e3e8bd004fc5 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga160d2ce0296b1af16250e3e8bd004fc5">ResetDescr</a> (void)</td></tr>
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<tr class="memdesc:ga160d2ce0296b1af16250e3e8bd004fc5 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Descr data member. <a href="group__dataspec__NCBI__Sequence.html#ga160d2ce0296b1af16250e3e8bd004fc5">More...</a><br /></td></tr>
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<tr class="separator:ga160d2ce0296b1af16250e3e8bd004fc5 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gadb43da3d34da1e4538daa34bf903dd8c inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__Sequence.html#gaf98fb7c0832830177e1f3e300e80749b">TDescr</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gadb43da3d34da1e4538daa34bf903dd8c">GetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gadb43da3d34da1e4538daa34bf903dd8c inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Descr member data. <a href="group__dataspec__NCBI__Sequence.html#gadb43da3d34da1e4538daa34bf903dd8c">More...</a><br /></td></tr>
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<tr class="separator:gadb43da3d34da1e4538daa34bf903dd8c inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaa3446f650866bce25f17ce984f8e7937 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaa3446f650866bce25f17ce984f8e7937">SetDescr</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#gaf98fb7c0832830177e1f3e300e80749b">TDescr</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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<tr class="memdesc:gaa3446f650866bce25f17ce984f8e7937 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Descr data member. <a href="group__dataspec__NCBI__Sequence.html#gaa3446f650866bce25f17ce984f8e7937">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa3446f650866bce25f17ce984f8e7937 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab83108d336a602b896911e19210b3f14 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaf98fb7c0832830177e1f3e300e80749b">TDescr</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gab83108d336a602b896911e19210b3f14">SetDescr</a> (void)</td></tr>
|
||
<tr class="memdesc:gab83108d336a602b896911e19210b3f14 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Descr data member. <a href="group__dataspec__NCBI__Sequence.html#gab83108d336a602b896911e19210b3f14">More...</a><br /></td></tr>
|
||
<tr class="separator:gab83108d336a602b896911e19210b3f14 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5cff325e32f5e24328da644a277638bc inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga5cff325e32f5e24328da644a277638bc">IsSetInst</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga5cff325e32f5e24328da644a277638bc inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">the sequence data <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Inst data member. <a href="group__dataspec__NCBI__Sequence.html#ga5cff325e32f5e24328da644a277638bc">More...</a><br /></td></tr>
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<tr class="separator:ga5cff325e32f5e24328da644a277638bc inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaeef4f2f586df52f75245dd88011b96ad inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaeef4f2f586df52f75245dd88011b96ad">CanGetInst</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaeef4f2f586df52f75245dd88011b96ad inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetInst method. <a href="group__dataspec__NCBI__Sequence.html#gaeef4f2f586df52f75245dd88011b96ad">More...</a><br /></td></tr>
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||
<tr class="separator:gaeef4f2f586df52f75245dd88011b96ad inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac2574455176f72086d9a41bcfcfed2b1 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gac2574455176f72086d9a41bcfcfed2b1">ResetInst</a> (void)</td></tr>
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<tr class="memdesc:gac2574455176f72086d9a41bcfcfed2b1 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Inst data member. <a href="group__dataspec__NCBI__Sequence.html#gac2574455176f72086d9a41bcfcfed2b1">More...</a><br /></td></tr>
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||
<tr class="separator:gac2574455176f72086d9a41bcfcfed2b1 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga201d4306858bc8525ca8e67f91c2899c inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__Sequence.html#gab724969c72c19ff47eef13111a45dddd">TInst</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga201d4306858bc8525ca8e67f91c2899c">GetInst</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga201d4306858bc8525ca8e67f91c2899c inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Inst member data. <a href="group__dataspec__NCBI__Sequence.html#ga201d4306858bc8525ca8e67f91c2899c">More...</a><br /></td></tr>
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||
<tr class="separator:ga201d4306858bc8525ca8e67f91c2899c inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8ab306fb45498d5bd2d75904210383de inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga8ab306fb45498d5bd2d75904210383de">SetInst</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#gab724969c72c19ff47eef13111a45dddd">TInst</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga8ab306fb45498d5bd2d75904210383de inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Inst data member. <a href="group__dataspec__NCBI__Sequence.html#ga8ab306fb45498d5bd2d75904210383de">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8ab306fb45498d5bd2d75904210383de inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga862c9a98dfd366bcd3d6c4c2a611e5b1 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#gab724969c72c19ff47eef13111a45dddd">TInst</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga862c9a98dfd366bcd3d6c4c2a611e5b1">SetInst</a> (void)</td></tr>
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||
<tr class="memdesc:ga862c9a98dfd366bcd3d6c4c2a611e5b1 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Inst data member. <a href="group__dataspec__NCBI__Sequence.html#ga862c9a98dfd366bcd3d6c4c2a611e5b1">More...</a><br /></td></tr>
|
||
<tr class="separator:ga862c9a98dfd366bcd3d6c4c2a611e5b1 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga32e25adad0c10b024b88951d9b20449b inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga32e25adad0c10b024b88951d9b20449b">IsSetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga32e25adad0c10b024b88951d9b20449b inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if a value has been assigned to Annot data member. <a href="group__dataspec__NCBI__Sequence.html#ga32e25adad0c10b024b88951d9b20449b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga32e25adad0c10b024b88951d9b20449b inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2ff9e52eb72c51f782e29fbe8b6429b8 inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga2ff9e52eb72c51f782e29fbe8b6429b8">CanGetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga2ff9e52eb72c51f782e29fbe8b6429b8 inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetAnnot method. <a href="group__dataspec__NCBI__Sequence.html#ga2ff9e52eb72c51f782e29fbe8b6429b8">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2ff9e52eb72c51f782e29fbe8b6429b8 inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga52e5173042d12d42190e9774e3d80b7d inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga52e5173042d12d42190e9774e3d80b7d">ResetAnnot</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52e5173042d12d42190e9774e3d80b7d inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Annot data member. <a href="group__dataspec__NCBI__Sequence.html#ga52e5173042d12d42190e9774e3d80b7d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52e5173042d12d42190e9774e3d80b7d inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga4cf5d701c63b55458141eaaf1fad70ea inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__Sequence.html#gabf5df64f40ea266180c6f286667d4c25">TAnnot</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga4cf5d701c63b55458141eaaf1fad70ea">GetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga4cf5d701c63b55458141eaaf1fad70ea inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Annot member data. <a href="group__dataspec__NCBI__Sequence.html#ga4cf5d701c63b55458141eaaf1fad70ea">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4cf5d701c63b55458141eaaf1fad70ea inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4cece757bf7e45a0d858dfb4d95a8b3b inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#gabf5df64f40ea266180c6f286667d4c25">TAnnot</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga4cece757bf7e45a0d858dfb4d95a8b3b">SetAnnot</a> (void)</td></tr>
|
||
<tr class="memdesc:ga4cece757bf7e45a0d858dfb4d95a8b3b inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Annot data member. <a href="group__dataspec__NCBI__Sequence.html#ga4cece757bf7e45a0d858dfb4d95a8b3b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4cece757bf7e45a0d858dfb4d95a8b3b inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga91b3064da7dfae21cbbaaf11bd31f9ca inherit pub_methods_classCBioseq__Base"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga91b3064da7dfae21cbbaaf11bd31f9ca">Reset</a> (void)</td></tr>
|
||
<tr class="memdesc:ga91b3064da7dfae21cbbaaf11bd31f9ca inherit pub_methods_classCBioseq__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset the whole object. <a href="group__dataspec__NCBI__Sequence.html#ga91b3064da7dfae21cbbaaf11bd31f9ca">More...</a><br /></td></tr>
|
||
<tr class="separator:ga91b3064da7dfae21cbbaaf11bd31f9ca inherit pub_methods_classCBioseq__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
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||
<tr class="memitem:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga8575b1015c4a4f3336b6e1c0a4324b71">CSerialObject</a> (void)</td></tr>
|
||
<tr class="separator:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gaf278b96157abad20b5d944fb83d32fb1">~CSerialObject</a> (void)</td></tr>
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<tr class="separator:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTypeInfo.html">CTypeInfo</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacb5d8a2e6878e58aeaeaf342081f0b7f">GetThisTypeInfo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> =0</td></tr>
|
||
<tr class="separator:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">Assign</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &source, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>)</td></tr>
|
||
<tr class="memdesc:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Set object to copy of another one. <a href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">More...</a><br /></td></tr>
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||
<tr class="separator:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">Equals</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &object, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if both objects contain the same values. <a href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">More...</a><br /></td></tr>
|
||
<tr class="separator:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">More...</a><br /></td></tr>
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||
<tr class="separator:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga7382b4cd30306d9444f85abd912ff61e">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
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<tr class="separator:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab5506012856f3627d88368a24e1eb254">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi__sample__base_8hpp.html#a8334353b550f5c3b6d2ea57d716ab2e2">file_name</a>, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> file_line) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">HasNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object data type has namespace name. <a href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">GetNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace name. <a href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">More...</a><br /></td></tr>
|
||
<tr class="separator:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">HasNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if data type has namespace prefix. <a href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">More...</a><br /></td></tr>
|
||
<tr class="separator:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">GetNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace prefix. <a href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">More...</a><br /></td></tr>
|
||
<tr class="separator:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
|
||
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
|
||
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
|
||
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
|
||
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
|
||
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
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||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCSerialUserOp"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSerialUserOp')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCSerialUserOp.html">CSerialUserOp</a></td></tr>
|
||
<tr class="memitem:ga6a399046cde36cf17a740c295c8f3216 inherit pub_methods_classCSerialUserOp"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6a399046cde36cf17a740c295c8f3216">~CSerialUserOp</a> ()</td></tr>
|
||
<tr class="separator:ga6a399046cde36cf17a740c295c8f3216 inherit pub_methods_classCSerialUserOp"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
|
||
Protected Member Functions</h2></td></tr>
|
||
<tr class="memitem:a7a6e289ab14e704612465c95502d43cb"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a7a6e289ab14e704612465c95502d43cb">UserOp_Assign</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialUserOp.html">CSerialUserOp</a> &source)</td></tr>
|
||
<tr class="memdesc:a7a6e289ab14e704612465c95502d43cb"><td class="mdescLeft"> </td><td class="mdescRight">Will be called after copying the datatool-generated members. <a href="classCBioseq.html#a7a6e289ab14e704612465c95502d43cb">More...</a><br /></td></tr>
|
||
<tr class="separator:a7a6e289ab14e704612465c95502d43cb"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a1e67e1ea3b31e5249e1c02a99af3ac31"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a1e67e1ea3b31e5249e1c02a99af3ac31">UserOp_Equals</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialUserOp.html">CSerialUserOp</a> &object) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a1e67e1ea3b31e5249e1c02a99af3ac31"><td class="mdescLeft"> </td><td class="mdescRight">Will be called after comparing the datatool-generated members. <a href="classCBioseq.html#a1e67e1ea3b31e5249e1c02a99af3ac31">More...</a><br /></td></tr>
|
||
<tr class="separator:a1e67e1ea3b31e5249e1c02a99af3ac31"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-types"></a>
|
||
Private Types</h2></td></tr>
|
||
<tr class="memitem:ad4a5ed3e74c63e70d830a9e2eae324e1"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCBioseq__Base.html">CBioseq_Base</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#ad4a5ed3e74c63e70d830a9e2eae324e1">Tparent</a></td></tr>
|
||
<tr class="separator:ad4a5ed3e74c63e70d830a9e2eae324e1"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
|
||
Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:a8c9643da6fe9bfa2dc4009671bffac92"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a8c9643da6fe9bfa2dc4009671bffac92">CBioseq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBioseq.html">CBioseq</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="separator:a8c9643da6fe9bfa2dc4009671bffac92"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ac7aac72c53c9f162df9b6372cc3df565"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBioseq.html">CBioseq</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#ac7aac72c53c9f162df9b6372cc3df565">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBioseq.html">CBioseq</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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||
<tr class="separator:ac7aac72c53c9f162df9b6372cc3df565"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a14cc9ebd16518471087e88e76da9982b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a14cc9ebd16518471087e88e76da9982b">SetParentEntry</a> (<a class="el" href="classCSeq__entry.html">CSeq_entry</a> *entry)</td></tr>
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||
<tr class="separator:a14cc9ebd16518471087e88e76da9982b"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-methods"></a>
|
||
Static Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:a572303ac4a6d52f3bd463b75e9b0ae59"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a572303ac4a6d52f3bd463b75e9b0ae59">x_SeqLoc_To_DeltaExt</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> &loc, <a class="el" href="classCDelta__ext.html">CDelta_ext</a> &ext)</td></tr>
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||
<tr class="separator:a572303ac4a6d52f3bd463b75e9b0ae59"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
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||
Private Attributes</h2></td></tr>
|
||
<tr class="memitem:a01d0fdc007241f17bd13ecc39318ff44"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__entry.html">CSeq_entry</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a01d0fdc007241f17bd13ecc39318ff44">m_ParentEntry</a></td></tr>
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<tr class="separator:a01d0fdc007241f17bd13ecc39318ff44"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-attribs"></a>
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||
Static Private Attributes</h2></td></tr>
|
||
<tr class="memitem:a8a325b9b5d4dce4c32ac22536bbbeac1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#a8a325b9b5d4dce4c32ac22536bbbeac1">sm_ConstructedId</a> = 0</td></tr>
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<tr class="separator:a8a325b9b5d4dce4c32ac22536bbbeac1"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
|
||
Friends</h2></td></tr>
|
||
<tr class="memitem:ac5d0215223049707047735e3a1e81944"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBioseq.html#ac5d0215223049707047735e3a1e81944">CSeq_entry</a></td></tr>
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<tr class="separator:ac5d0215223049707047735e3a1e81944"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
|
||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
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||
<tr class="memitem:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab2a92c7a5b5900317294b85e854db07e">SetVerifyDataThread</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
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||
<tr class="separator:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga2e3bead397d7ec0fffde866cd890267e">SetVerifyDataGlobal</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
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||
<tr class="separator:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gada3dbb83951d0bed9bde06c6c4ede9e2">UnassignedString</a> (void)</td></tr>
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<tr class="separator:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__STL.html#ga88e22aab83a29bae20f5354e89b041e3">CStringUTF8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga123d82fb69550b6418ad5d69e752873a">UnassignedStringUTF8</a> (void)</td></tr>
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<tr class="separator:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga1d897c6ce0f541df2487600cedd9f40a">UnassignedByte</a> (void)</td></tr>
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<tr class="separator:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
|
||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
|
||
<tr class="memitem:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacf732f6a9f64037d0cad32a72f7522ea">ms_UnassignedStr</a> = "<*unassigned*>"</td></tr>
|
||
<tr class="separator:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6baaf827f8d2e4f98be84d91d511a716">ms_UnassignedByte</a> = char(0xcd)</td></tr>
|
||
<tr class="separator:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock">
|
||
<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00062">62</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
|
||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||
<a id="ad4a5ed3e74c63e70d830a9e2eae324e1"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ad4a5ed3e74c63e70d830a9e2eae324e1">◆ </a></span>Tparent</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef <a class="el" href="classCBioseq__Base.html">CBioseq_Base</a> <a class="el" href="classCBioseq.html#ad4a5ed3e74c63e70d830a9e2eae324e1">CBioseq::Tparent</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00064">64</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Enumeration Documentation</h2>
|
||
<a id="a47f9fffbed0cb715f49286de83c73730"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a47f9fffbed0cb715f49286de83c73730">◆ </a></span>ELabelType</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">enum <a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730">CBioseq::ELabelType</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
<table class="fieldtable">
|
||
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a47f9fffbed0cb715f49286de83c73730ad7516890581e6c7826e5fb89141a0484"></a>eType </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="a47f9fffbed0cb715f49286de83c73730a893b2069aa3b2e3a712c979ef846c6d5"></a>eContent </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="a47f9fffbed0cb715f49286de83c73730af97e9c88c510af03fc481621e66e491e"></a>eBoth </td><td class="fielddoc"></td></tr>
|
||
</table>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00101">101</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
|
||
<a id="abe7d9317d07ba462ead09ac1d18290ac"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#abe7d9317d07ba462ead09ac1d18290ac">◆ </a></span>CBioseq() <span class="overload">[1/3]</span></h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">CBioseq::CBioseq </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00162">162</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="aa1ded558c21e9f2290cae5939e47052d"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aa1ded558c21e9f2290cae5939e47052d">◆ </a></span>~CBioseq()</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">CBioseq::~CBioseq </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00084">84</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
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<h2 class="memtitle"><span class="permalink"><a href="#a797209fe0ed7d7edda682c29098e3210">◆ </a></span>CBioseq() <span class="overload">[2/3]</span></h2>
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<td class="memname">CBioseq::CBioseq </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> & </td>
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<td class="paramname"><em>loc</em>, </td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
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<td class="paramname"><em>str_id</em> = <code><a class="el" href="group__String.html#ga22e230174d0eec8c98ef37f69f263afb">kEmptyStr</a></code> </td>
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<td>)</td>
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<span class="mlabels"><span class="mlabel">explicit</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00151">151</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Seq__inst___8hpp_source.html#l00114">CSeq_inst_Base::eMol_other</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00096">CSeq_inst_Base::eRepr_const</a>, <a class="el" href="corelib_2ncbistr_8hpp_source.html#l05078">NStr::IntToString()</a>, <a class="el" href="Seq__inst___8cpp_source.html#l00147">CSeq_inst_Base::SetExt()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00296">CBioseq_Base::SetId()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00345">CBioseq_Base::SetInst()</a>, <a class="el" href="Seq__id___8cpp_source.html#l00199">CSeq_id_Base::SetLocal()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00621">CSeq_inst_Base::SetMol()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00574">CSeq_inst_Base::SetRepr()</a>, <a class="el" href="Object__id___8hpp_source.html#l00304">CObject_id_Base::SetStr()</a>, <a class="el" href="Bioseq_8hpp_source.html#l00151">sm_ConstructedId</a>, and <a class="el" href="Bioseq_8cpp_source.html#l00100">x_SeqLoc_To_DeltaExt()</a>.</p>
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<a id="a8c9643da6fe9bfa2dc4009671bffac92"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a8c9643da6fe9bfa2dc4009671bffac92">◆ </a></span>CBioseq() <span class="overload">[3/3]</span></h2>
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<td class="memname">CBioseq::CBioseq </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBioseq.html">CBioseq</a> & </td>
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<td class="paramname"><em>value</em></td><td>)</td>
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<h2 class="groupheader">Member Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a49f09b54ed2a329cd23b726f73b32587">◆ </a></span>GetClosestDescriptor()</h2>
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeqdesc.html">CSeqdesc</a> > CBioseq::GetClosestDescriptor </td>
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<td class="paramtype"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9727e4daff612af12779888e4fd6b5b6">CSeqdesc::E_Choice</a> </td>
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<td class="paramname"><em>choice</em>, </td>
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<td class="paramtype"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> * </td>
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<td class="paramname"><em>level</em> = <code><a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a></code> </td>
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<td></td><td> const</td>
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<p class="definition">Definition at line <a class="el" href="Seq__entry_8cpp_source.html#l00212">212</a> of file <a class="el" href="Seq__entry_8cpp_source.html">Seq_entry.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Seq__descr___8hpp_source.html#l00166">CSeq_descr_Base::Get()</a>, <a class="el" href="Seq__entry_8cpp_source.html#l00120">CSeq_entry::GetDescr()</a>, <a class="el" href="Bioseq_8hpp_source.html#l00174">GetParentEntry()</a>, <a class="el" href="Seq__entry_8hpp_source.html#l00131">CSeq_entry::GetParentEntry()</a>, <a class="el" href="Seq__entry_8cpp_source.html#l00106">CSeq_entry::IsSetDescr()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, and <a class="el" href="Seqdesc___8hpp_source.html#l00903">CSeqdesc_Base::Which()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="flat__file__generator_8cpp_source.html#l00687">CFlatFileGenerator::Generate()</a>, <a class="el" href="seqtitle_8cpp_source.html#l00551">GetTitle()</a>, <a class="el" href="macro__fn__do_8cpp_source.html#l01752">CMacroFunction_MakeBoldXrefs::s_HasBarcodeDbXref()</a>, <a class="el" href="macro__fn__where_8cpp_source.html#l00275">CMacroFunction_GetSeqdesc::TheFunction()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09171">CValidError_bioseq::ValidateMolInfoContext()</a>, <a class="el" href="validerror__bioseqset_8cpp_source.html#l00426">CValidError_bioseqset::ValidateNucProtSet()</a>, <a class="el" href="asn2fasta_8cpp_source.html#l00852">CAsn2FastaApp::x_GetFastaOstream()</a>, and <a class="el" href="validerror__bioseq_8cpp_source.html#l05077">CValidError_bioseq::x_ReportSuspiciousUseOfComplete()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a3368176496056f9eb312de7e85b40c26">◆ </a></span>GetFirstId()</h2>
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<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * CBioseq::GetFirstId </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00271">271</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="ctre-unicode_8hpp_source.html#l00525">ctll::empty()</a>, and <a class="el" href="Bioseq___8hpp_source.html#l00290">CBioseq_Base::GetId()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blastsetup__unit__test_8cpp_source.html#l01177">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="cached__sequence_8cpp_source.html#l00046">CCachedSequence::CCachedSequence()</a>, <a class="el" href="flat__file__text__item_8cpp_source.html#l00158">CFlatFileTextItem::CFlatFileTextItem()</a>, <a class="el" href="gene__model_8cpp_source.html#l04209">CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot()</a>, <a class="el" href="cuBlast2Seq_8cpp_source.html#l00559">CdBlaster::FillOutSeqLoc()</a>, <a class="el" href="view__graphic_8cpp_source.html#l00132">CViewGraphic::InitView()</a>, <a class="el" href="vcf__table__view_8cpp_source.html#l00235">CVcfTableView::InitView()</a>, <a class="el" href="tblastn__node_8cpp_source.html#l00079">CTblastnNode::Main()</a>, <a class="el" href="make__badspecifichost__tbl_8cpp_source.html#l00050">CMakeBadSpecificHostTable::MakeTable()</a>, <a class="el" href="sequester__sets_8cpp_source.html#l00250">CSequesterSets::OnAccept()</a>, <a class="el" href="select__feature__dlg_8cpp_source.html#l00486">CSelectFeatureDlg::OnButtonSaveFile()</a>, <a class="el" href="reorder__sequences__dlg_8cpp_source.html#l00241">CReorderSequencesDlg::ReadBioseq()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l00214">CSegregateSetsBase::ReadBioseq()</a>, <a class="el" href="psiblast__app_8cpp_source.html#l00412">CPsiBlastApp::Run()</a>, <a class="el" href="local__finder_8cpp_source.html#l00094">CLocalFinderApp::Run()</a>, <a class="el" href="tblastn__vdb_8cpp_source.html#l00176">CVDBTblastnApp::Run()</a>, <a class="el" href="deltablast__app_8cpp_source.html#l00171">s_AddSeqDataToPssm()</a>, <a class="el" href="magicblast__util_8cpp_source.html#l00220">s_CreateQueryMap()</a>, <a class="el" href="magicblast__util_8cpp_source.html#l00201">s_GetFastaDefline()</a>, <a class="el" href="blastinput__unit__test_8cpp_source.html#l02882">s_GetSequenceId()</a>, <a class="el" href="cn3d__blast_8cpp_source.html#l00245">SimpleSeqLocFromBioseq()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l00439">CSegregateSetsBase::TakeFromSet()</a>, <a class="el" href="blastdbcheck_8cpp_source.html#l00474">CTestAction::TestOID()</a>, <a class="el" href="blast__vdb__cmd_8cpp_source.html#l00197">CVdbFastaExtractor::Write()</a>, <a class="el" href="external__annots_8cpp_source.html#l00079">CAnnotGetter::x_AddAnnotations()</a>, <a class="el" href="aln__reader_8cpp_source.html#l00807">CAlnReader::x_AddMods()</a>, <a class="el" href="fasta_8cpp_source.html#l02047">CFastaReader::x_AddMods()</a>, <a class="el" href="blast__sra__input_8cpp_source.html#l00207">CSraInputSource::x_GetNextSeq_loc()</a>, <a class="el" href="agp__converter_8cpp_source.html#l00529">CAgpConverter::x_InitializeCopyOfTemplate()</a>, <a class="el" href="makeprofiledb_8cpp_source.html#l01392">CMakeProfileDBApp::x_MakeVol()</a>, <a class="el" href="blast__formatter_8cpp_source.html#l00150">CBlastFormatterApp::x_QueryBioseqToSSeqLoc()</a>, <a class="el" href="blast__formatter__vdb_8cpp_source.html#l00148">CBlastFormatterVdbApp::x_QueryBioseqToSSeqLoc()</a>, <a class="el" href="blast__asn1__input_8cpp_source.html#l00086">CASN1InputSourceOMF::x_ReadOneSeq()</a>, <a class="el" href="delta__unit__test_8cpp_source.html#l00098">CDeltaBlastTestFixture::x_ReadSeqEntriesFromFile()</a>, <a class="el" href="tblastn__app_8cpp_source.html#l00176">CTblastnApp::x_RunMTBySplitDB()</a>, <a class="el" href="split__loader_8cpp_source.html#l00210">CSplitDataLoader::x_SplitSeq()</a>, <a class="el" href="prime__cache_8cpp_source.html#l00946">CPrimeCacheApplication::x_StripSeqEntry()</a>, and <a class="el" href="validerror__graph_8cpp_source.html#l00349">CValidError_graph::x_ValidateGraphValues()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a6658c00f90daa5e1194d77ee0f0d78a9">◆ </a></span>GetLabel()</h2>
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<td class="memname">void CBioseq::GetLabel </td>
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<td class="paramtype"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> * </td>
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<td class="paramname"><em>label</em>, </td>
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<td class="paramtype"><a class="el" href="classCBioseq.html#a47f9fffbed0cb715f49286de83c73730">ELabelType</a> </td>
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<td class="paramname"><em>type</em>, </td>
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<td></td>
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<td class="paramtype"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td>
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<td class="paramname"><em>worst</em> = <code><a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a></code> </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00202">202</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Seq__id_8cpp_source.html#l00318">CSeq_id::Assign()</a>, <a class="el" href="Seq__id___8hpp_source.html#l00107">CSeq_id_Base::e_Ddbj</a>, <a class="el" href="Seq__id___8hpp_source.html#l00100">CSeq_id_Base::e_Embl</a>, <a class="el" href="Seq__id___8hpp_source.html#l00099">CSeq_id_Base::e_Genbank</a>, <a class="el" href="Seq__id___8hpp_source.html#l00104">CSeq_id_Base::e_Other</a>, <a class="el" href="Bioseq_8hpp_source.html#l00103">eContent</a>, <a class="el" href="ctre-unicode_8hpp_source.html#l00525">ctll::empty()</a>, <a class="el" href="Bioseq_8hpp_source.html#l00102">eType</a>, <a class="el" href="ncbiutil_8hpp_source.html#l00250">FindBestChoice()</a>, <a class="el" href="enumerated_8cpp_source.html#l00146">CEnumeratedTypeValues::FindName()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00290">CBioseq_Base::GetId()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, <a class="el" href="Bioseq_8cpp_source.html#l00360">GetLength()</a>, <a class="el" href="Seq__id_8cpp_source.html#l00169">CSeq_id::GetTextseq_Id()</a>, <a class="el" href="corelib_2ncbistr_8hpp_source.html#l05078">NStr::IntToString()</a>, <a class="el" href="Textseq__id___8hpp_source.html#l00328">CTextseq_id_Base::IsSetAccession()</a>, <a class="el" href="Bioseq_8cpp_source.html#l00355">IsSetLength()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="ftds100_2freetds_2tds_2sec__negotiate__gnutls_8h_source.html#l00210">label</a>, <a class="el" href="Textseq__id___8cpp_source.html#l00050">CTextseq_id_Base::ResetName()</a>, <a class="el" href="cgiapp_8hpp_source.html#l00690">string</a>, <a class="el" href="Seq__id___8hpp_source.html#l00746">CSeq_id_Base::Which()</a>, and <a class="el" href="Seq__id_8hpp_source.html#l00776">CSeq_id::WorstRank()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="validerror__bioseq_8cpp_source.html#l05055">CValidError_bioseq::CheckForPubOnBioseq()</a>, <a class="el" href="validerror__format_8cpp_source.html#l01049">CValidErrorFormat::GetBioseqLabel()</a>, <a class="el" href="correct__genes__dialog_8cpp_source.html#l00229">CCorrectGenesDialog::GetCommand()</a>, <a class="el" href="label_8cpp_source.html#l00961">CBioseqHandler::GetLabel()</a>, <a class="el" href="Seq__entry_8cpp_source.html#l00274">CSeq_entry::GetLabel()</a>, <a class="el" href="edit__sequence_8cpp_source.html#l00685">CEditSequence::GetSeqTitle()</a>, <a class="el" href="paint__alignment_8cpp_source.html#l00110">CPaintAlignment::GetSeqTitle()</a>, <a class="el" href="app__dialogs_8cpp_source.html#l00248">s_CheckDataStatus()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l03967">CValidError_bioseq::ValidateSegRef()</a>, and <a class="el" href="validerror__bioseq_8cpp_source.html#l08714">CValidError_bioseq::ValidateSeqDescContext()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a5d94344250c9a0d2397bf3b800b3497a">◆ </a></span>GetLength()</h2>
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<td class="memname"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> CBioseq::GetLength </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00360">360</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, and <a class="el" href="Seq__inst___8hpp_source.html#l00659">CSeq_inst_Base::GetLength()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="gaps__edit_8cpp_source.html#l00450">CGapsEditor::AddBioseqAsLiteral()</a>, <a class="el" href="unit__test__autodef_8cpp_source.html#l00589">AddFeat()</a>, <a class="el" href="feature_8cpp_source.html#l04195">AddProteinFeature()</a>, <a class="el" href="build__db_8cpp_source.html#l00794">CBuildDatabase::AddSequences()</a>, <a class="el" href="unit__test__util_8cpp_source.html#l01679">AddToDeltaSeq()</a>, <a class="el" href="convert__raw__to__delta_8cpp_source.html#l00371">AdjustSingleFeature()</a>, <a class="el" href="fcs__reader_8cpp_source.html#l00296">CForeignContaminationScreenReportReader::AnnotateOrRemove()</a>, <a class="el" href="pssmcreate__cdd__unit__test_8cpp_source.html#l00771">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="genref_8cpp_source.html#l02591">CheckGene()</a>, <a class="el" href="cmd__add__cds_8cpp_source.html#l00049">CCmdAddCDS::Execute()</a>, <a class="el" href="cmd__add__cds_8cpp_source.html#l00195">CCmdCreateCDS::Execute()</a>, <a class="el" href="blastdb__dataextract_8cpp_source.html#l00665">CBlastDBExtractor::ExtractFasta()</a>, <a class="el" href="cuBlast2Seq_8cpp_source.html#l00559">CdBlaster::FillOutSeqLoc()</a>, <a class="el" href="genref_8cpp_source.html#l02313">FindGene()</a>, <a class="el" href="add_8cpp_source.html#l01112">fta_parse_tpa_tsa_block()</a>, <a class="el" href="add_8cpp_source.html#l00382">GapsToDelta()</a>, <a class="el" href="Bioseq_8cpp_source.html#l00202">GetLabel()</a>, <a class="el" href="bulk__location__panel_8cpp_source.html#l00268">CBulkLocationPanel::GetLocForBioseq()</a>, <a class="el" href="objtools_2flatfile_2nucprot_8cpp_source.html#l00550">GetProtRefAnnot()</a>, <a class="el" href="util__cmds_8cpp_source.html#l01117">GetRetranslateCDSCommand()</a>, <a class="el" href="asci__blk_8cpp_source.html#l01674">GetSeqData()</a>, <a class="el" href="sp__ascii_8cpp_source.html#l03987">GetSeqLen()</a>, <a class="el" href="sp__ascii_8cpp_source.html#l04472">GetSPSegLocInfo()</a>, <a class="el" href="objtools_2flatfile_2nucprot_8cpp_source.html#l01890">IfOnlyStopCodon()</a>, <a class="el" href="blastfmtutil_8cpp_source.html#l00572">CBlastFormatUtil::InsertSubjectScores()</a>, <a class="el" href="convert__cds__with__gaps__to__misc__feat_8cpp_source.html#l00432">CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight()</a>, <a class="el" href="feature__tests_8cpp_source.html#l00360">IsExtendableRight()</a>, <a class="el" href="convert__cds__with__gaps__to__misc__feat_8cpp_source.html#l00468">CConvertBadCdsAndRnaToMiscFeat::IsNonExtendable()</a>, <a class="el" href="feature__tests_8cpp_source.html#l00429">IsNonExtendable()</a>, <a class="el" href="unit__test__entry__edit_8cpp_source.html#l00328">MakeEntryForDeltaConversion()</a>, <a class="el" href="named__collection__score__impl_8cpp_source.html#l00092">CScoreSeqCoverage::MakeScore()</a>, <a class="el" href="named__collection__score__impl_8cpp_source.html#l00142">CScoreUniqSeqCoverage::MakeScore()</a>, <a class="el" href="unit__test__cds__fix_8cpp_source.html#l00190">OneTerminalTranslationExceptionTest()</a>, <a class="el" href="remove__sequences_8cpp_source.html#l00333">CRemoveSequencesDlg::OnSelect()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l00991">CLengthSubpanel::OnSelectButton()</a>, <a class="el" href="fta__qscore_8cpp_source.html#l00855">QSbuf_To_Single_Qscore_SeqGraph()</a>, <a class="el" href="seq__entry__edit_8cpp_source.html#l03304">RetranslateCdregion()</a>, <a class="el" href="feature_8cpp_source.html#l04121">RetranslateCDS()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00125">RetrieveGi555WithTimeOut()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00310">RetrieveLargeChromosomeWithTimeOut()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00207">RetrieveLargeNuclSequence()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00162">RetrieveLargeProteinWithTimeOut()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00241">RetrievePartsOfLargeChromosome()</a>, <a class="el" href="unit__test__util_8cpp_source.html#l01560">RevComp()</a>, <a class="el" href="update__seq__input_8cpp_source.html#l00511">CUpdateSeq_Input::s_ConvertDeltaToRawBioseq()</a>, <a class="el" href="blastinput__unit__test_8cpp_source.html#l00756">s_ReadAndTestQueryFromString_CFastaReader()</a>, <a class="el" href="add_8cpp_source.html#l00500">SeqToDelta()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l01022">CLengthSubpanel::SetClusters()</a>, <a class="el" href="cn3d__blast_8cpp_source.html#l00245">SimpleSeqLocFromBioseq()</a>, <a class="el" href="fta__qscore_8cpp_source.html#l00613">Split_Qscore_SeqGraph_By_DeltaSeq()</a>, <a class="el" href="asci__blk_8cpp_source.html#l02390">SrchSegLength()</a>, <a class="el" href="unit__test__seq__translator_8cpp_source.html#l01026">TestOneGapSeq()</a>, <a class="el" href="unit__test__validator_8cpp_source.html#l24547">TestUTRPair()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l04392">CValidError_bioseq::ValidateDelta()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l03280">CValidError_bioseq::ValidateNsAndGaps()</a>, <a class="el" href="fasta__writer_8cpp_source.html#l01218">CQualScoreWriter::Write()</a>, <a class="el" href="update__seq_8cpp_source.html#l01986">CSequenceUpdater::x_AdjustProteinFeature()</a>, <a class="el" href="pkg__sequence__edit_2dll__register_8cpp_source.html#l01011">CSequenceEditingEventHandler::x_CacheSelectedLocations()</a>, <a class="el" href="Location__constraint_8cpp_source.html#l00157">CLocation_constraint::x_DoesLocationMatchDistanceConstraint()</a>, <a class="el" href="adjust__features__for__gaps_8cpp_source.html#l00686">CAdjustFeaturesForGaps::x_DoOne()</a>, <a class="el" href="newcleanupp_8cpp_source.html#l11650">CNewCleanup_imp::x_ExtendFeatureToCoverSequence()</a>, <a class="el" href="newcleanupp_8cpp_source.html#l11681">CNewCleanup_imp::x_ExtendProteinFeatureOnProteinSeq()</a>, <a class="el" href="asn2fasta_8cpp_source.html#l00852">CAsn2FastaApp::x_GetFastaOstream()</a>, <a class="el" href="edit__object__seq__feat_8cpp_source.html#l00997">CEditObjectSeq_feat::x_HandleCdsProduct()</a>, <a class="el" href="agp__converter_8cpp_source.html#l00454">CAgpConverter::x_InitializeAndCheckCopyOfTemplate()</a>, <a class="el" href="vectortrimpanel_8cpp_source.html#l00950">CVectorTrimPanel::x_RetranslateCDS()</a>, <a class="el" href="fasta__writer_8cpp_source.html#l01328">CQualScoreWriter::x_WriteHeader()</a>, and <a class="el" href="fcs__reader_8cpp_source.html#l00270">CForeignContaminationScreenReportReader::xCheckLen()</a>.</p>
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<a id="a6a94dc1e7be45113797deb13364e3380"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a6a94dc1e7be45113797deb13364e3380">◆ </a></span>GetLocalId()</h2>
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<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * CBioseq::GetLocalId </td>
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<td>(</td>
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<td class="paramname"></td><td>)</td>
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<td> const</td>
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<p>Find a local ID if present. </p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00336">336</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="ncbiutil_8hpp_source.html#l00250">FindBestChoice()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00290">CBioseq_Base::GetId()</a>, <a class="el" href="Seq__id___8hpp_source.html#l00775">CSeq_id_Base::IsLocal()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, and <a class="el" href="Bioseq_8cpp_source.html#l00328">s_BestLocalRank()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="unit__test__sequpdate_8cpp_source.html#l00369">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="miscedit__util_8cpp_source.html#l01250">CLocalIDField::GetVals()</a>, <a class="el" href="miscedit__util_8cpp_source.html#l01289">CLocalIDField::IsEmpty()</a>, <a class="el" href="editing__action__desc_8cpp_source.html#l02858">CEditingActionDescLocalId::Modify()</a>, and <a class="el" href="ssub__fork_8cpp_source.html#l00434">seqsubmit_split::SIdCompare::xGetId()</a>.</p>
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</div>
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</div>
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<a id="a1692d423c03bed5afd586942c5dd2d07"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a1692d423c03bed5afd586942c5dd2d07">◆ </a></span>GetNonLocalId()</h2>
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<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> * CBioseq::GetNonLocalId </td>
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<td>(</td>
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<td class="paramname"></td><td>)</td>
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<td> const</td>
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<p>Find a non-local ID if present, consulting assembly details if all IDs for the overall sequence are local. </p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00292">292</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Seq__hist___8hpp_source.html#l00506">CSeq_hist_Base::CanGetAssembly()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00853">CSeq_inst_Base::CanGetHist()</a>, <a class="el" href="fileutil_8cpp_source.html#l00523">Empty()</a>, <a class="el" href="ncbiutil_8hpp_source.html#l00250">FindBestChoice()</a>, <a class="el" href="Seq__hist___8hpp_source.html#l00512">CSeq_hist_Base::GetAssembly()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00859">CSeq_inst_Base::GetHist()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00290">CBioseq_Base::GetId()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, <a class="el" href="Seq__id___8hpp_source.html#l00775">CSeq_id_Base::IsLocal()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="Seq__id_8hpp_source.html#l01065">CSeq_id::Match()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, and <a class="el" href="Bioseq_8cpp_source.html#l00281">s_BestNonLocalRank()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="writedb__impl_8cpp_source.html#l00736">s_UseFastaReaderDeflines()</a>.</p>
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</div>
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<a id="a055ca3aa6193bf523513f77fc7da8cdb"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a055ca3aa6193bf523513f77fc7da8cdb">◆ </a></span>GetParentEntry()</h2>
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<td class="mlabels-left">
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<td class="memname"><a class="el" href="classCSeq__entry.html">CSeq_entry</a> * CBioseq::GetParentEntry </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<td class="paramname"></td><td>)</td>
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<td> const</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00174">174</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq_8hpp_source.html#l00147">m_ParentEntry</a>.</p>
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<p class="reference">Referenced by <a class="el" href="basic__converters_8cpp_source.html#l00209">Convert_Bioseq_Seq_entry()</a>, <a class="el" href="sequpd_8cpp_source.html#l00139">sequpd::FixCollidingIDs_Bioseq()</a>, <a class="el" href="read__blast__result__lib_8cpp_source.html#l00379">get_parent_seqset()</a>, <a class="el" href="validatorp_8cpp_source.html#l02762">CValidError_imp::GetAncestor()</a>, <a class="el" href="Seq__entry_8cpp_source.html#l00212">GetClosestDescriptor()</a>, <a class="el" href="Bioseq__set_8cpp_source.html#l00312">GetParentSet()</a>, <a class="el" href="makeblastdb_8cpp_source.html#l00367">s_GetTaxId()</a>, <a class="el" href="Seq__entry_8cpp_source.html#l00435">sx_FindBestId()</a>, <a class="el" href="process__defline_8hpp_source.html#l00318">CDeflineProcess::UnindexedProcess()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09136">CValidError_bioseq::ValidateGBBlock()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09918">CValidError_bioseq::ValidateModifDescriptors()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09171">CValidError_bioseq::ValidateMolInfoContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09981">CValidError_bioseq::ValidateMoltypeDescriptors()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l10095">CValidError_bioseq::ValidateOrgContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l08714">CValidError_bioseq::ValidateSeqDescContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l06071">CValidError_bioseq::ValidateSeqFeatContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l02580">CValidError_bioseq::ValidateSeqParts()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l10069">CValidError_bioseq::ValidateUpdateDateContext()</a>, <a class="el" href="indexer_8cpp_source.html#l00349">CSeqMasterIndex::x_Initialize()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l05077">CValidError_bioseq::x_ReportSuspiciousUseOfComplete()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l05091">CValidError_bioseq::x_ValidateCompletness()</a>, and <a class="el" href="validerror__bioseq_8cpp_source.html#l02702">CValidError_bioseq::x_ValidateTitle()</a>.</p>
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<a id="a48510bc31acea8784a1480a0f1eea06e"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a48510bc31acea8784a1480a0f1eea06e">◆ </a></span>GetParentSet()</h2>
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCBioseq__set.html">CBioseq_set</a> > CBioseq::GetParentSet </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq__set_8cpp_source.html#l00312">312</a> of file <a class="el" href="Bioseq__set_8cpp_source.html">Bioseq_set.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq_8hpp_source.html#l00174">GetParentEntry()</a>, <a class="el" href="Seq__entry_8hpp_source.html#l00131">CSeq_entry::GetParentEntry()</a>, <a class="el" href="Seq__entry___8cpp_source.html#l00124">CSeq_entry_Base::GetSet()</a>, and <a class="el" href="Seq__entry___8hpp_source.html#l00263">CSeq_entry_Base::IsSet()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="cleanup_8cpp_source.html#l02371">CCleanup::AddPartialToProteinTitle()</a>, <a class="el" href="source__mod__parser_8cpp_source.html#l00575">CSourceModParser::ApplyAllMods()</a>, <a class="el" href="descr__mod__apply_8cpp_source.html#l01006">CDescrCache::CDescrCache()</a>, <a class="el" href="discrepancy__dlg_8cpp_source.html#l01608">CollectNucProtBioseqs()</a>, and <a class="el" href="source__mod__parser_8cpp_source.html#l01441">s_SetDBLinkDesc()</a>.</p>
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<a id="a703a9c67111b5341678df03019ee38e8"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a703a9c67111b5341678df03019ee38e8">◆ </a></span>GetTaxId()</h2>
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<td class="memname"><a class="el" href="group__AppFramework.html#gac1947a5600889669571884ebe66ec0e0">TTaxId</a> CBioseq::GetTaxId </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<p>Determine the tax-id for this bioseq. </p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00177">177</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="named__parameters_8hpp_source.html#l00099">Get()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00315">CBioseq_Base::GetDescr()</a>, <a class="el" href="Seqdesc___8cpp_source.html#l00240">CSeqdesc_Base::GetOrg()</a>, <a class="el" href="BioSource___8hpp_source.html#l00509">CBioSource_Base::GetOrg()</a>, <a class="el" href="Seqdesc___8cpp_source.html#l00566">CSeqdesc_Base::GetSource()</a>, <a class="el" href="Org__ref_8cpp_source.html#l00072">COrg_ref::GetTaxId()</a>, <a class="el" href="Seqdesc___8hpp_source.html#l01046">CSeqdesc_Base::IsOrg()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00303">CBioseq_Base::IsSetDescr()</a>, <a class="el" href="BioSource___8hpp_source.html#l00497">CBioSource_Base::IsSetOrg()</a>, <a class="el" href="Seqdesc___8hpp_source.html#l01190">CSeqdesc_Base::IsSource()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="ncbimisc_8hpp_source.html#l01115">ZERO_TAX_ID</a>.</p>
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<p class="reference">Referenced by <a class="el" href="local__dataloader__test_8cpp_source.html#l00257">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="makeblastdb_8cpp_source.html#l00499">CSeqEntrySource::GetNext()</a>, and <a class="el" href="blastdbcheck_8cpp_source.html#l00474">CTestAction::TestOID()</a>.</p>
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<a id="ab81bb76d3d6cdded8ae2ab48ad6cf73a"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ab81bb76d3d6cdded8ae2ab48ad6cf73a">◆ </a></span>IsAa()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CBioseq::IsAa </td>
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<td>(</td>
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<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00350">350</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, and <a class="el" href="Seq__inst_8hpp_source.html#l00099">CSeq_inst::IsAa()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="valid__pub_8cpp_source.html#l01190">CValidError_imp::AddBioseqWithNoPub()</a>, <a class="el" href="cleanup_8cpp_source.html#l01824">CCleanup::AddMissingMolInfo()</a>, <a class="el" href="writedb__impl_8cpp_source.html#l00158">CWriteDB_Impl::AddSequence()</a>, <a class="el" href="build__db_8cpp_source.html#l00794">CBuildDatabase::AddSequences()</a>, <a class="el" href="gap__trim_8cpp_source.html#l00333">CFeatGapInfo::AdjustProteinSeq()</a>, <a class="el" href="source__mod__parser_8cpp_source.html#l00575">CSourceModParser::ApplyAllMods()</a>, <a class="el" href="clear__keywords_8cpp_source.html#l00274">CClearKeywords::ApplyToCSeq_entry()</a>, <a class="el" href="sequence_8cpp_source.html#l04086">CSeqTranslator::ChangeDeltaProteinToRawProtein()</a>, <a class="el" href="feature__table__reader_8cpp_source.html#l01856">CFeatureTableReader::ChangeDeltaProteinToRawProtein()</a>, <a class="el" href="newcleanupp_8cpp_source.html#l11433">CNewCleanup_imp::CreateMissingMolInfo()</a>, <a class="el" href="cmd__add__seqentry_8cpp_source.html#l00061">CCmdAddSeqEntry::Execute()</a>, <a class="el" href="suspect__feat_8cpp_source.html#l00163">objects::CFixSuspectProductName::FixSuspectProductNames()</a>, <a class="el" href="apply__rna__its__dlg_8cpp_source.html#l00771">CApplyRNAITSDlg::GetCommand()</a>, <a class="el" href="gui__object__info__bioseq_8cpp_source.html#l00069">CGuiObjectInfoBioseq::GetIcon()</a>, <a class="el" href="label_8cpp_source.html#l00961">CBioseqHandler::GetLabel()</a>, <a class="el" href="cuCdUpdater_8cpp_source.html#l01410">CDUpdater::GetOneBioseqFromSeqEntry()</a>, <a class="el" href="gui__object__info__bioseq_8cpp_source.html#l00059">CGuiObjectInfoBioseq::GetSubtype()</a>, <a class="el" href="seqtitle_8cpp_source.html#l00551">GetTitle()</a>, <a class="el" href="locations_8cpp_source.html#l00100">CReadBlastApp::hasGenomicLocation()</a>, <a class="el" href="read__blast__result__lib_8cpp_source.html#l00570">CReadBlastApp::less_seq()</a>, <a class="el" href="pkg__sequence__edit_2dll__register_8cpp_source.html#l08429">LoadFileForSubmission()</a>, <a class="el" href="Location__constraint_8cpp_source.html#l00197">CLocation_constraint::Match()</a>, <a class="el" href="cds__translation__panel_8cpp_source.html#l01417">CCDSTranslationPanel::OnImportCdsProteinHyperlinkClicked()</a>, <a class="el" href="newcleanupp_8cpp_source.html#l12040">CNewCleanup_imp::RemoveBadProteinTitle()</a>, <a class="el" href="problems_8cpp_source.html#l00460">CReadBlastApp::RemoveProblems()</a>, <a class="el" href="newcleanupp_8cpp_source.html#l12000">CNewCleanup_imp::ResynchPeptidePartials()</a>, <a class="el" href="process__prosplign_8hpp_source.html#l00080">CProsplignProcess::SeqEntryProcess()</a>, <a class="el" href="unit__test__util_8cpp_source.html#l01049">SetCompleteness()</a>, <a class="el" href="macro__fn__aecr_8cpp_source.html#l04976">CMacroFunction_AddDBLink::TheFunction()</a>, <a class="el" href="macro__fn__feature_8cpp_source.html#l02474">CMacroFunction_ApplyCDS::TheFunction()</a>, <a class="el" href="macro__fn__feature_8cpp_source.html#l02611">CMacroFunction_ApplyRNA::TheFunction()</a>, <a class="el" href="macro__fn__feature_8cpp_source.html#l02684">CMacroFunction_ApplyGene::TheFunction()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l01255">CValidError_bioseq::ValidateBioseqContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l01040">CValidError_bioseq::ValidateInst()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09171">CValidError_bioseq::ValidateMolInfoContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09981">CValidError_bioseq::ValidateMoltypeDescriptors()</a>, <a class="el" href="validerror__bioseqset_8cpp_source.html#l00426">CValidError_bioseqset::ValidateNucProtSet()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l03578">CValidError_bioseq::ValidateRawConst()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l03967">CValidError_bioseq::ValidateSegRef()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l08714">CValidError_bioseq::ValidateSeqDescContext()</a>, <a class="el" href="validerror__feat_8cpp_source.html#l00193">CValidError_feat::ValidateSeqFeatContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l00677">CValidError_bioseq::ValidateSeqIds()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l02557">CValidError_bioseq::ValidateSeqLen()</a>, <a class="el" href="pkg__sequence__edit_2dll__register_8cpp_source.html#l01011">CSequenceEditingEventHandler::x_CacheSelectedLocations()</a>, <a class="el" href="Location__constraint_8cpp_source.html#l00097">CLocation_constraint::x_DoesBioseqMatchSequenceType()</a>, <a class="el" href="writedb__impl_8cpp_source.html#l01719">CWriteDB_Impl::x_GetFastaReaderDeflines()</a>, and <a class="el" href="macro__fn__entry_8cpp_source.html#l01499">CMacroFunction_UpdateProteinSeqs::x_ReadUpdateSeqs()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ab3ecb5fdfdf1523216d62f7a3713e113">◆ </a></span>IsNa()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CBioseq::IsNa </td>
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<td>(</td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00345">345</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, and <a class="el" href="Seq__inst_8hpp_source.html#l00090">CSeq_inst::IsNa()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="feature__mod__apply_8cpp_source.html#l00068">CFeatModApply::Apply()</a>, <a class="el" href="source__mod__parser_8cpp_source.html#l00575">CSourceModParser::ApplyAllMods()</a>, <a class="el" href="source__mod__parser_8cpp_source.html#l00753">CSourceModParser::ApplyMods()</a>, <a class="el" href="clear__keywords_8cpp_source.html#l00274">CClearKeywords::ApplyToCSeq_entry()</a>, <a class="el" href="fasta_8cpp_source.html#l00710">CFastaReader::CheckDataLine()</a>, <a class="el" href="unit__test__autodef_8cpp_source.html#l00570">FindNucInSeqEntry()</a>, <a class="el" href="apply__rna__its__dlg_8cpp_source.html#l00771">CApplyRNAITSDlg::GetCommand()</a>, <a class="el" href="gui__object__info__bioseq_8cpp_source.html#l00069">CGuiObjectInfoBioseq::GetIcon()</a>, <a class="el" href="label_8cpp_source.html#l00961">CBioseqHandler::GetLabel()</a>, <a class="el" href="mask__fasta__reader_8cpp_source.html#l00043">CMaskFastaReader::GetNextSequence()</a>, <a class="el" href="Bioseq__set_8cpp_source.html#l00227">CBioseq_set::GetNucFromNucProtSet()</a>, <a class="el" href="gui__object__info__bioseq_8cpp_source.html#l00059">CGuiObjectInfoBioseq::GetSubtype()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l00917">CValidError_bioseq::IsHistAssemblyMissing()</a>, <a class="el" href="feature__table__reader_8cpp_source.html#l01935">CFeatureTableReader::MoveRegionsToProteins()</a>, <a class="el" href="fasta_8cpp_source.html#l00774">CFastaReader::ParseDataLine()</a>, <a class="el" href="struc__cmt__reader_8cpp_source.html#l00112">CTable2AsnStructuredCommentsReader::ProcessComments()</a>, <a class="el" href="reorder__sequences__dlg_8cpp_source.html#l00241">CReorderSequencesDlg::ReadBioseq()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l00214">CSegregateSetsBase::ReadBioseq()</a>, <a class="el" href="macro__util_8cpp_source.html#l00313">NMacroUtil::RemoveEmptyDescriptors()</a>, <a class="el" href="asn1_8cpp_source.html#l01156">RestoreModelFromInternalGnomonFeature()</a>, <a class="el" href="asn1_8cpp_source.html#l01133">RestoreModelFromPublicMrnaFeature()</a>, <a class="el" href="unit__test__util_8cpp_source.html#l01560">RevComp()</a>, <a class="el" href="validerror__bioseqset_8cpp_source.html#l00071">s_AutoDefUserObjectFromBioseq()</a>, <a class="el" href="update__seq__input_8cpp_source.html#l00544">s_CollectCollidingIDs_Entry()</a>, <a class="el" href="update__seq__input_8cpp_source.html#l00511">CUpdateSeq_Input::s_ConvertDeltaToRawBioseq()</a>, <a class="el" href="update__seq__input_8cpp_source.html#l00498">CUpdateSeq_Input::s_ConvertDeltaToRawEntry()</a>, <a class="el" href="update__seq__input_8cpp_source.html#l00531">CUpdateSeq_Input::s_FixCollidingIDs_Entry()</a>, <a class="el" href="feature__table__reader_8cpp_source.html#l00732">s_HasUnprocessedCdregions()</a>, <a class="el" href="process__agpwrite_8hpp_source.html#l00099">CAgpwriteProcess::SeqEntryProcess()</a>, <a class="el" href="process__prosplign_8hpp_source.html#l00080">CProsplignProcess::SeqEntryProcess()</a>, <a class="el" href="macro__fn__aecr_8cpp_source.html#l06556">CMacroFunction_SetStructCommDb::TheFunction()</a>, <a class="el" href="macro__fn__entry_8cpp_source.html#l00432">CMacroFunction_Autodef::TheFunction()</a>, <a class="el" href="macro__fn__feature_8cpp_source.html#l00546">CMacroFunction_RemoveAllFeatures::TheFunction()</a>, <a class="el" href="validerror__bioseqset_8cpp_source.html#l00133">CValidError_bioseqset::ValidateBioseqSet()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l10291">CValidError_bioseq::ValidateCompleteGenome()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l04392">CValidError_bioseq::ValidateDelta()</a>, <a class="el" href="validerror__graph_8cpp_source.html#l00187">CValidError_graph::ValidateGraphsOnBioseq()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l01040">CValidError_bioseq::ValidateInst()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l09171">CValidError_bioseq::ValidateMolInfoContext()</a>, <a class="el" href="validerror__bioseqset_8cpp_source.html#l00426">CValidError_bioseqset::ValidateNucProtSet()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l03578">CValidError_bioseq::ValidateRawConst()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l08714">CValidError_bioseq::ValidateSeqDescContext()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l00677">CValidError_bioseq::ValidateSeqIds()</a>, <a class="el" href="convert__seq_8cpp_source.html#l00311">CConversionApp::Write()</a>, <a class="el" href="update__seq_8cpp_source.html#l01986">CSequenceUpdater::x_AdjustProteinFeature()</a>, <a class="el" href="Location__constraint_8cpp_source.html#l00097">CLocation_constraint::x_DoesBioseqMatchSequenceType()</a>, <a class="el" href="submission__wizard_8cpp_source.html#l00929">CSubmissionWizard::x_ExtractDescriptorsFromSeqEntry()</a>, <a class="el" href="showdefline_8cpp_source.html#l00658">CShowBlastDefline::x_InitDefline()</a>, <a class="el" href="update__seq_8cpp_source.html#l02014">CSequenceUpdater::x_UpdateProteinID()</a>, <a class="el" href="validerror__bioseq_8cpp_source.html#l05091">CValidError_bioseq::x_ValidateCompletness()</a>, and <a class="el" href="feature__table__reader_8cpp_source.html#l01135">CFeatureTableReader::xConvertSeqIntoSeqSet()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a6a80609c84198848fb70f4aacac5d9bf">◆ </a></span>IsSetLength()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CBioseq::IsSetLength </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00355">355</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq___8hpp_source.html#l00336">CBioseq_Base::GetInst()</a>, and <a class="el" href="Seq__inst___8hpp_source.html#l00640">CSeq_inst_Base::IsSetLength()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="fcs__reader_8cpp_source.html#l00296">CForeignContaminationScreenReportReader::AnnotateOrRemove()</a>, <a class="el" href="Bioseq_8cpp_source.html#l00202">GetLabel()</a>, <a class="el" href="blastfmtutil_8cpp_source.html#l00572">CBlastFormatUtil::InsertSubjectScores()</a>, <a class="el" href="named__collection__score__impl_8cpp_source.html#l00092">CScoreSeqCoverage::MakeScore()</a>, <a class="el" href="named__collection__score__impl_8cpp_source.html#l00142">CScoreUniqSeqCoverage::MakeScore()</a>, <a class="el" href="remove__sequences_8cpp_source.html#l00333">CRemoveSequencesDlg::OnSelect()</a>, <a class="el" href="segregate__sets_8cpp_source.html#l00991">CLengthSubpanel::OnSelectButton()</a>, <a class="el" href="bdbloader__unit__test_8cpp_source.html#l00241">RetrievePartsOfLargeChromosome()</a>, <a class="el" href="agp__converter_8cpp_source.html#l00454">CAgpConverter::x_InitializeAndCheckCopyOfTemplate()</a>, <a class="el" href="fasta__writer_8cpp_source.html#l01328">CQualScoreWriter::x_WriteHeader()</a>, and <a class="el" href="fcs__reader_8cpp_source.html#l00270">CForeignContaminationScreenReportReader::xCheckLen()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ac7aac72c53c9f162df9b6372cc3df565">◆ </a></span>operator=()</h2>
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<td class="memname"><a class="el" href="classCBioseq.html">CBioseq</a>& CBioseq::operator= </td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBioseq.html">CBioseq</a> & </td>
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<h2 class="memtitle"><span class="permalink"><a href="#a847822ed23ec546cb24b9f1a13065a52">◆ </a></span>PackAsDeltaSeq()</h2>
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<td class="memname">void CBioseq::PackAsDeltaSeq </td>
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<td class="paramtype"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td>
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<td class="paramname"><em>gaps_ok</em> = <code><a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a></code></td><td>)</td>
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<p><a class="el" href="namespaceConvert.html">Convert</a> a raw nucleotide sequence with occasional ambiguities or gaps into a tighter (but somewhat more complex) delta-seq representation. </p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00365">365</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Delta__ext_8cpp_source.html#l00183">CDelta_ext::AddAndSplit()</a>, <a class="el" href="Bioseq_8cpp.html#a1cbf46b281ed5b4ea8a1eb35d11c1e29">CODING_CASE</a>, <a class="el" href="ftds14_2freetds_2tds_2iconv_8c_source.html#l00080">data</a>, <a class="el" href="Seq__data___8hpp_source.html#l00106">CSeq_data_Base::e_Ncbi2na</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00100">CSeq_inst_Base::eRepr_delta</a>, <a class="el" href="ncbidiag_8hpp_source.html#l00550">ERR_POST_X</a>, <a class="el" href="Delta__ext___8hpp_source.html#l00164">CDelta_ext_Base::Get()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00659">CSeq_inst_Base::GetLength()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00817">CSeq_inst_Base::GetSeq_data()</a>, <a class="el" href="Seq__inst_8hpp_source.html#l00099">CSeq_inst::IsAa()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00826">CSeq_inst_Base::IsSetExt()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00805">CSeq_inst_Base::IsSetSeq_data()</a>, <a class="el" href="Seq__inst___8cpp_source.html#l00142">CSeq_inst_Base::ResetExt()</a>, <a class="el" href="Seq__inst___8cpp_source.html#l00125">CSeq_inst_Base::ResetSeq_data()</a>, <a class="el" href="Seq__data___8cpp_source.html#l00156">CSeq_data_Base::SelectionName()</a>, <a class="el" href="Seq__inst___8cpp_source.html#l00147">CSeq_inst_Base::SetExt()</a>, <a class="el" href="Bioseq___8hpp_source.html#l00345">CBioseq_Base::SetInst()</a>, <a class="el" href="Seq__inst___8hpp_source.html#l00574">CSeq_inst_Base::SetRepr()</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l01191">Warning()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a14cc9ebd16518471087e88e76da9982b">◆ </a></span>SetParentEntry()</h2>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00168">168</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
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<p class="reference">References <a class="el" href="Bioseq_8hpp_source.html#l00147">m_ParentEntry</a>.</p>
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<p class="reference">Referenced by <a class="el" href="Seq__entry_8cpp_source.html#l00071">CSeq_entry::Parentize()</a>, and <a class="el" href="Seq__entry_8cpp_source.html#l00089">CSeq_entry::ParentizeOneLevel()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a7a6e289ab14e704612465c95502d43cb">◆ </a></span>UserOp_Assign()</h2>
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<td class="memname">void CBioseq::UserOp_Assign </td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialUserOp.html">CSerialUserOp</a> & </td>
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<p>Will be called after copying the datatool-generated members. </p>
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<p>Implements <a class="el" href="group__GenClassSupport.html#ga4a7135c579d0e926ffaee8bb72d9d6dd">CSerialUserOp</a>.</p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00088">88</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a1e67e1ea3b31e5249e1c02a99af3ac31">◆ </a></span>UserOp_Equals()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CBioseq::UserOp_Equals </td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialUserOp.html">CSerialUserOp</a> & </td>
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<p>Will be called after comparing the datatool-generated members. </p>
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<p>Implements <a class="el" href="group__GenClassSupport.html#ga46919b4d07215ce18e44c4cfa64a6fe1">CSerialUserOp</a>.</p>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00092">92</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a572303ac4a6d52f3bd463b75e9b0ae59">◆ </a></span>x_SeqLoc_To_DeltaExt()</h2>
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<td class="memname">void CBioseq::x_SeqLoc_To_DeltaExt </td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> & </td>
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<td class="paramname"><em>loc</em>, </td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8cpp_source.html#l00100">100</a> of file <a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a>.</p>
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<p class="reference">References <a class="el" href="Seq__loc___8hpp_source.html#l00105">CSeq_loc_Base::e_Mix</a>, <a class="el" href="Seq__loc___8hpp_source.html#l00102">CSeq_loc_Base::e_Packed_int</a>, <a class="el" href="Seq__loc___8hpp_source.html#l00104">CSeq_loc_Base::e_Packed_pnt</a>, <a class="el" href="Packed__seqint___8hpp_source.html#l00164">CPacked_seqint_Base::Get()</a>, <a class="el" href="Seq__loc__mix___8hpp_source.html#l00165">CSeq_loc_mix_Base::Get()</a>, <a class="el" href="Packed__seqpnt___8hpp_source.html#l00337">CPacked_seqpnt_Base::GetId()</a>, <a class="el" href="Seq__loc___8cpp_source.html#l00282">CSeq_loc_Base::GetMix()</a>, <a class="el" href="Seq__loc___8cpp_source.html#l00216">CSeq_loc_Base::GetPacked_int()</a>, <a class="el" href="Seq__loc___8cpp_source.html#l00260">CSeq_loc_Base::GetPacked_pnt()</a>, <a class="el" href="Packed__seqpnt___8hpp_source.html#l00388">CPacked_seqpnt_Base::GetPoints()</a>, <a class="el" href="Packed__seqpnt___8hpp_source.html#l00297">CPacked_seqpnt_Base::GetStrand()</a>, <a class="el" href="Packed__seqpnt___8hpp_source.html#l00278">CPacked_seqpnt_Base::IsSetStrand()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="utils_2math_8hpp_source.html#l00054">pi</a>, <a class="el" href="Delta__ext___8hpp_source.html#l00170">CDelta_ext_Base::Set()</a>, <a class="el" href="Delta__seq___8cpp_source.html#l00108">CDelta_seq_Base::SetLoc()</a>, <a class="el" href="Seq__loc_8hpp_source.html#l00985">CSeq_loc::SetPnt()</a>, and <a class="el" href="Seq__loc___8hpp_source.html#l00475">CSeq_loc_Base::Which()</a>.</p>
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<p class="reference">Referenced by <a class="el" href="Bioseq_8cpp_source.html#l00151">CBioseq()</a>.</p>
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<h2 class="groupheader">Friends And Related Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#ac5d0215223049707047735e3a1e81944">◆ </a></span>CSeq_entry</h2>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00153">153</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a01d0fdc007241f17bd13ecc39318ff44">◆ </a></span>m_ParentEntry</h2>
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<td class="memname"><a class="el" href="classCSeq__entry.html">CSeq_entry</a>* CBioseq::m_ParentEntry</td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00147">147</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="Bioseq_8hpp_source.html#l00174">GetParentEntry()</a>, and <a class="el" href="Bioseq_8hpp_source.html#l00168">SetParentEntry()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a8a325b9b5d4dce4c32ac22536bbbeac1">◆ </a></span>sm_ConstructedId</h2>
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<td class="memname"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> CBioseq::sm_ConstructedId = 0</td>
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<p class="definition">Definition at line <a class="el" href="Bioseq_8hpp_source.html#l00151">151</a> of file <a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="Bioseq_8cpp_source.html#l00151">CBioseq()</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
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<li>include/objects/seq/<a class="el" href="Bioseq_8hpp_source.html">Bioseq.hpp</a></li>
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<li>src/objects/seq/<a class="el" href="Bioseq_8cpp_source.html">Bioseq.cpp</a></li>
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<li>src/objects/seqset/<a class="el" href="Bioseq__set_8cpp_source.html">Bioseq_set.cpp</a></li>
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<li>src/objects/seqset/<a class="el" href="Seq__entry_8cpp_source.html">Seq_entry.cpp</a></li>
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Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
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<address style="align: right;"><small>Modified on Fri Sep 20 14:58:19 2024 by modify_doxy.py rev. 669887</small></address>
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