52 lines
No EOL
1.7 KiB
HTML
52 lines
No EOL
1.7 KiB
HTML
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<title>Spliced-exon</title>
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<h3>Spliced-exon</h3><pre>Defined in file <a href="seqalign.asn.html">seqalign.asn</a>
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C++ class: <a href="../doxyhtml/classCSpliced__exon.html">CSpliced_exon</a>
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Spliced-exon ::= SEQUENCE {
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-- product-end >= product-start
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product-start <a href="Product-pos.html">Product-pos</a> ,
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product-end <a href="Product-pos.html">Product-pos</a> ,
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-- genomic-end >= genomic-start
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genomic-start INTEGER ,
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genomic-end INTEGER ,
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-- product is either protein or transcript (cDNA)
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product-id <a href="Seq-id.html">Seq-id</a> OPTIONAL ,
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genomic-id <a href="Seq-id.html">Seq-id</a> OPTIONAL ,
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-- should be 'plus' or 'minus'
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product-strand <a href="Na-strand.html">Na-strand</a> OPTIONAL ,
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-- genomic-strand represents the strand of translation
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genomic-strand <a href="Na-strand.html">Na-strand</a> OPTIONAL ,
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-- basic seqments always are in biologic order
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parts SEQUENCE OF <a href="Spliced-exon-chunk.html">Spliced-exon-chunk</a> OPTIONAL ,
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-- scores for this exon
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scores <a href="Score-set.html">Score-set</a> OPTIONAL ,
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-- splice sites
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acceptor-before-exon <a href="Splice-site.html">Splice-site</a> OPTIONAL,
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donor-after-exon <a href="Splice-site.html">Splice-site</a> OPTIONAL,
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-- flag: is this exon complete or partial?
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partial BOOLEAN OPTIONAL,
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--extra info
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ext SEQUENCE OF <a href="User-object.html">User-object</a> OPTIONAL
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}</pre>
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