317 lines
10 KiB
HTML
317 lines
10 KiB
HTML
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<li class='active'>Sample validation of ChIP-seq data</li>
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<!-- Overridden analysis/detail_action.html -->
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<h2>
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<span>Sample validation of ChIP-seq data</span>
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<table class='table table-condensed'>
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<tr>
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<th style='width: 15%'>Description</th>
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<td style='width: 85%'>
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Sample validation of H3K27ac ChIP-seq data. For the test dataset, a validated H3K27ac ChIP-seq dataset in ES-Bruce4 cells generated by the Ren Lab for the ENCODE project was used. The test data was then run against all other H3K27ac data, as well as data from input controls and the mutually exclusive H3K27me3 mark. RefSeq TSSs were used as the feature list.
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</td>
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</tr>
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<tr>
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<th>Anchor</th>
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<td>center</td>
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</tr>
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<tr>
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<th>Bin start</th>
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<td>-2500</td>
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</tr>
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<tr>
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<th>Number of bins</th>
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<td>50</td>
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</tr>
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<tr>
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<th>Bin size</th>
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<td>100</td>
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</tr>
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<tr>
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<th>Public</th>
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<td><i class='fa fa-check-square-o' title'checked'></i></td>
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</tr>
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<tr>
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<th>Validated</th>
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<td><i class='fa fa-check-square-o' title'checked'></i></td>
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</tr>
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<tr>
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<th>Genome assembly</th>
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<td>mm9</td>
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</tr>
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<tr>
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<th>Date created</th>
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<td>Oct. 12, 2016, 10:19 a.m.</td>
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</tr>
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<tr>
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<th>Date updated</th>
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<td>Dec. 16, 2016, 1:56 p.m.</td>
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</tr>
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<tr>
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<th>Feature list</th>
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<td>
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<span>mm9_RefSeq_TSSs</span>
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</td>
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</tr>
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<tr>
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<th>Sort vector</th>
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<td>
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<span><i><none></i></span>
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</td>
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</tr>
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<tr>
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<th>User datasets</th>
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<td>
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<ul>
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<li><span>ES-Bruce4 Input rep2</span></li>
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<li><span>ES-Bruce4 Input rep1</span></li>
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<li><span>ES-Bruce4 H3K27ac rep2</span></li>
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<li><span>ES-Bruce4 H3K27ac rep1</span></li>
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</ul>
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</td>
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</tr>
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<tr>
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<th>ENCODE datasets</th>
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<td>
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<ul>
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<li>wgEncodeLicrHistoneLiverInputMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneLiverH3k27acMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneHeartH3k27acMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneHeartInputMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneSpleenH3k27acMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneKidneyInputMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneKidneyH3k27acMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneSpleenInputMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneSpleenH3k27me3MAdlt8wC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneKidneyH3k27me3MAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneHeartH3k27me3MAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrHistoneLiverH3k27me3MAdult8wksC57bl6StdSig</li>
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</ul>
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</td>
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</tr>
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</tbody>
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