109 lines
60 KiB
HTML
109 lines
60 KiB
HTML
<!DOCTYPE html>
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="NCBI Taxonomy Updates to Prokaryotes - NCBI Insights"><meta property="og:description" content="As previously announced, NCBI is continuing to improve our Taxonomy resource. The International Code of Nomenclature of Prokaryotes (ICNP) recently introduced changes to the code of nomenclature that governs naming of prokaryotes. Following these changes, we are updating the higher-level classification of prokaryotes with the introduction of rank ‘kingdom’ and other changes for this group. The changes … Continue reading NCBI Taxonomy Updates to Prokaryotes →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2024/10/02/ncbi-taxonomy-updates-prokaryotes/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2024-10-02T14:59:11+00:00"><meta property="article:modified_time" content="2024-10-02T18:11:05+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/10/Proks_NCBI-Taxonomy-2-e1727879532293.png"><meta property="og:image:width" content="1100"><meta property="og:image:height" content="575"><meta property="og:image:type" content="image/png"><meta name="author" content="NCBI Staff"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@NCBI"><meta name="twitter:site" content="@NCBI"><meta name="twitter:label1" content="Written by"><meta 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<h1 class="amp-wp-title">NCBI Taxonomy Updates to Prokaryotes</h1>
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<time datetime="2024-10-02T14:59:11+00:00">
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5 months ago </time>
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<amp-img width="1024" height="535" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/10/Proks_NCBI-Taxonomy-2-e1727879532293.png?fit=1024%2C535&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Six different rectangular pictures of prokaryotic organisms. Text says: Updates to Prokaryotes! NCBI Taxonomy." data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjUzNSIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Six different rectangular pictures of prokaryotic organisms. Text says: Updates to Prokaryotes! NCBI Taxonomy." src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/10/Proks_NCBI-Taxonomy-2-e1727879532293.png?fit=1024%2C535&ssl=1"></amp-img> </figure>
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<p><span data-contrast="auto">As </span><a href="https://ncbiinsights.ncbi.nlm.nih.gov/2024/06/04/changes-ncbi-taxonomy-classifications/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><span data-contrast="none">previously announced</span></a><span data-contrast="none">, NCBI is continuing to improve our </span><a href="https://www.ncbi.nlm.nih.gov/taxonomy?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><span data-contrast="none">Taxonomy resource</span></a>.<span data-contrast="none"> </span><span data-contrast="none">The </span><a href="https://the-icsp.org/index.php/code-of-nomenclatur"><span data-contrast="none">International Code of Nomenclature of Prokaryotes (ICNP)</span></a><span data-contrast="none"> recently introduced changes to the code of nomenclature that governs naming of prokaryotes. Following these changes, </span><span data-contrast="none">we are updating the higher-level classification of prokaryotes with the introduction </span><span data-contrast="none">of rank ‘kingdom’ and other changes for this group. The changes will first appear both in our </span><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><span data-contrast="none">legacy</span></a> <span data-contrast="none">and new </span><a href="https://www.ncbi.nlm.nih.gov/datasets/taxonomy/2/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><span data-contrast="none">NCBI Datasets taxonomy browsers</span></a><span data-contrast="none">, followed by data records. This update affects every prokaryotic record and may impact some pipelines and tools using lineage and/or name recognition. </span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></p>
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<h5><b><span data-contrast="none">What’s new?</span></b><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></h5>
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<p><span data-contrast="none">You will begin to see the following changes starting in October 2024, with the rollout continuing through December 2024:</span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></p>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Updated lineage information for nearly all Bacteria and Archaea with no change at species or other ranks below phylum </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">The following names will be introduced at rank ‘kingdom’: </span>
|
||
<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Nanobdellati (current name ‘DPANN group’) </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Thermoproteati (current name ‘TACK group’) </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Methanobacteriati </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Promethearchaeati (current name ‘Asgard group’) </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Bacillati (current name ‘Terrabacteria group’) </span></li>
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||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Fusobacteriati </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Thermotogati </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Pseudomonadati </span></li>
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||
</ul>
|
||
</li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">The following phyla will be renamed respectively: </span>
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<ul>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Euryarchaeota to Methanobacteriota </span></li>
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||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Candidatus Thermoplasmatota to Thermoplasmatota </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 16px;" class="amp-wp-beab583">Nanoarchaeota to Nanobdellota </span></li>
|
||
</ul>
|
||
</li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">All old names will still be searchable </span></li>
|
||
</ul>
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<h5><b><span data-contrast="none">Learn more</span></b><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></h5>
|
||
<p><span data-contrast="none">Learn more about these recent changes in the following publications:</span><span data-ccp-props='{"134233117":false,"134233118":false,"201341983":0,"335557856":16777215,"335559738":150,"335559739":0,"335559740":240}'> </span></p>
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<ul>
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<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><a href="https://pubmed.ncbi.nlm.nih.gov/38252124/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><i><span data-contrast="none"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Valid publication of names of two domains and seven kingdoms of prokaryotes</span></span></i></a><span data-ccp-props='{"134233117":false,"134233118":false,"201341983":0,"335557856":16777215,"335559738":150,"335559739":0,"335559740":240}' data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"> </span></li>
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<li data-leveltext="" data-font="Symbol" data-listid="25" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><a href="https://pubmed.ncbi.nlm.nih.gov/38967634/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=taxonomy-prokaryotes-20241002"><i>Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov</i></a> </span></li>
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