83 lines
5.4 KiB
Text
83 lines
5.4 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs6054/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs6054
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#Current Build 156
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#Released October 13, 2022
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#Organism Homo sapiens
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#Position chr4:154568456 (GRCh38.p14)
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#Alleles C>T
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 3 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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Allele Frequency Aggregator Total Global 293888 C=0.996056 T=0.003944 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 258608 C=0.995816 T=0.004184 SAMN10492695
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Allele Frequency Aggregator Other Sub 18484 C=0.99665 T=0.00335 SAMN11605645
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Allele Frequency Aggregator African Sub 8622 C=0.9988 T=0.0012 SAMN10492703
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Allele Frequency Aggregator Asian Sub 3942 C=1.0000 T=0.0000 SAMN10492704
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Allele Frequency Aggregator Latin American 2 Sub 2544 C=0.9996 T=0.0004 SAMN10492700
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Allele Frequency Aggregator Latin American 1 Sub 1322 C=0.9970 T=0.0030 SAMN10492699
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Allele Frequency Aggregator South Asian Sub 366 C=1.000 T=0.000 SAMN10492702
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TopMed Global Study-wide 264690 C=0.997518 T=0.002482 PRJNA400167
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gnomAD - Exomes Global Study-wide 251290 C=0.997648 T=0.002352 PRJNA398795 SAMN07488253
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gnomAD - Exomes European Sub 135228 C=0.996229 T=0.003771 SAMN10181265
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gnomAD - Exomes Asian Sub 49006 C=0.99908 T=0.00092
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gnomAD - Exomes American Sub 34586 C=0.99960 T=0.00040 SAMN07488255
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gnomAD - Exomes African Sub 16256 C=0.99926 T=0.00074 SAMN07488254
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gnomAD - Exomes Ashkenazi Jewish Sub 10080 C=1.00000 T=0.00000 SAMN07488252
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gnomAD - Exomes Other Sub 6134 C=0.9984 T=0.0016 SAMN07488248
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gnomAD - Genomes Global Study-wide 140016 C=0.997250 T=0.002750 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75864 C=0.99578 T=0.00422 SAMN10181265
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gnomAD - Genomes African Sub 41942 C=0.99883 T=0.00117 SAMN07488254
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gnomAD - Genomes American Sub 13612 C=0.99934 T=0.00066 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3318 C=1.0000 T=0.0000 SAMN07488252
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gnomAD - Genomes East Asian Sub 3130 C=0.9990 T=0.0010 SAMN07488251
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gnomAD - Genomes Other Sub 2150 C=0.9981 T=0.0019 SAMN07488248
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ExAC Global Study-wide 121364 C=0.997569 T=0.002431 PRJEB8661 SAMN07490465
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ExAC Europe Sub 73326 C=0.99651 T=0.00349
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ExAC Asian Sub 25156 C=0.99897 T=0.00103
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ExAC American Sub 11568 C=0.99974 T=0.00026
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ExAC African Sub 10406 C=0.99904 T=0.00096
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ExAC Other Sub 908 C=1.000 T=0.000 SAMN07486028
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The PAGE Study Global Study-wide 78702 C=0.99897 T=0.00103 PRJNA168052 SAMN10868975
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The PAGE Study AfricanAmerican Sub 32516 C=0.99877 T=0.00123 SAMN10868721
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The PAGE Study Mexican Sub 10810 C=0.99944 T=0.00056 SAMN10868735
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The PAGE Study Asian Sub 8318 C=0.9993 T=0.0007 SAMN10868722
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The PAGE Study PuertoRican Sub 7918 C=0.9990 T=0.0010 SAMN10868968
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The PAGE Study NativeHawaiian Sub 4534 C=0.9991 T=0.0009 SAMN10868777
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The PAGE Study Cuban Sub 4230 C=0.9993 T=0.0007 SAMN10868733
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The PAGE Study Dominican Sub 3828 C=0.9982 T=0.0018 SAMN10868734
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The PAGE Study CentralAmerican Sub 2450 C=0.9980 T=0.0020 SAMN10868729
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The PAGE Study SouthAmerican Sub 1982 C=1.0000 T=0.0000 SAMN10868969
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The PAGE Study NativeAmerican Sub 1260 C=0.9984 T=0.0016 SAMN10868739
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The PAGE Study SouthAsian Sub 856 C=1.000 T=0.000 SAMN10868970
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14KJPN JAPANESE Study-wide 28258 C=0.99858 T=0.00142 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16760 C=0.99845 T=0.00155 PRJNA678214 SAMN16789458
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GO Exome Sequencing Project Global Study-wide 13006 C=0.99685 T=0.00315 PRJNA192955
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GO Exome Sequencing Project European American Sub 8600 C=0.9959 T=0.0041
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GO Exome Sequencing Project African American Sub 4406 C=0.9986 T=0.0014
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1000Genomes_30x Global Study-wide 6404 C=0.9992 T=0.0008 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 C=1.0000 T=0.0000 SAMN07486022
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1000Genomes_30x Europe Sub 1266 C=0.9968 T=0.0032 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 C=0.9992 T=0.0008 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 C=1.0000 T=0.0000 SAMN07486024
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1000Genomes_30x American Sub 980 C=1.000 T=0.000 SAMN07488242
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1000Genomes Global Study-wide 5008 C=0.9990 T=0.0010 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 C=1.0000 T=0.0000 SAMN07486022
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1000Genomes East Asian Sub 1008 C=1.0000 T=0.0000 SAMN07486024
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1000Genomes Europe Sub 1006 C=0.9960 T=0.0040 SAMN07488239
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1000Genomes South Asian Sub 978 C=0.999 T=0.001 SAMN07486027
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1000Genomes American Sub 694 C=1.000 T=0.000 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.9998 T=0.0002 PRJNA489787
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The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.9943 T=0.0057 PRJEB7217
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UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.9933 T=0.0067 PRJEB7218
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KOREAN population from KRGDB KOREAN Study-wide 2922 C=0.9997 T=0.0003 PRJNA589833
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Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.993 T=0.007 PRJEB5829 SAMN13000132
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Northern Sweden ACPOP Study-wide 600 C=0.993 T=0.007 PPRJNA503394 SAMN10359154
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HapMap Global Study-wide 326 C=0.997 T=0.003 PRJNA60817 SAMN10820145
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HapMap American Sub 120 C=0.992 T=0.008 SAMN10821182
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HapMap African Sub 118 C=1.000 T=0.000 SAMN10821181
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HapMap Asian Sub 88 C=1.00 T=0.00 SAMN10821184
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FINRISK Finnish from FINRISK project Study-wide 304 C=0.997 T=0.003 PRJEB7895 SAMN13002954
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Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 32 C=1.00 T=0.00 PRJEB36033 SAMN15458807
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