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<div style="text-align: justify">
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<p>
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SNPDelScore displays pre-compute deleterious effects of noncoding variants using a large panel of
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currently available
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methods and summarizes this information in an interactive, easy to use website. It also provides open
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access to
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these data through a <a href="/research/snpdelscore/api/">RESTfull based web service</a> and a
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<a href="/research/snpdelscore/static/main/software/snp_rest_client.py">Python based web services command line
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client</a> to
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retrieve the data from other applications and tools.
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<h3 for="search_id" style="margin-top: 35px;">Locus ID</h3>
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<input id="search_id" name="search_id" type="search"
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/><br><br>
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<div style="font-size: small">SNP (rs62635286), gene name (DDX11L1) or genomic coordinates
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(chr8:11532494-11621567)
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</div>
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<h3 for="tissue_id" style="margin-top: 35px;">Tissue</h3>
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<select id="tissue_id" style="width: 200px;" name="tissue_id">
|
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<option value="1" >Average
|
||
</option>
|
||
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||
<option value="2" >H1 Cells
|
||
</option>
|
||
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<option value="3" >H1 BMP4 Derived Mesendoderm Cultured Cells
|
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</option>
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<option value="4" >H1 BMP4 Derived Trophoblast Cultured Cells
|
||
</option>
|
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||
<option value="5" >H1 Derived Mesenchymal Stem Cells
|
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</option>
|
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<option value="6" >H1 Derived Neuronal Progenitor Cultured Cells
|
||
</option>
|
||
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||
<option value="7" >H9 Cells
|
||
</option>
|
||
|
||
<option value="8" >IMR90 fetal lung fibroblasts Cell Line
|
||
</option>
|
||
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||
<option value="9" >iPS DF 6.9 Cells
|
||
</option>
|
||
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||
<option value="10" >iPS DF 19.11 Cells
|
||
</option>
|
||
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||
<option value="11" >Primary monocytes from peripheral blood
|
||
</option>
|
||
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<option value="12" >Primary B cells from peripheral blood
|
||
</option>
|
||
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||
<option value="13" >Primary T cells from peripheral blood
|
||
</option>
|
||
|
||
<option value="14" >Primary Natural Killer cells from peripheral blood
|
||
</option>
|
||
|
||
<option value="15" >Primary hematopoietic stem cells G-CSF-mobilized Female
|
||
</option>
|
||
|
||
<option value="16" >Foreskin Fibroblast Primary Cells skin01
|
||
</option>
|
||
|
||
<option value="17" >Foreskin Fibroblast Primary Cells skin02
|
||
</option>
|
||
|
||
<option value="18" >Foreskin Melanocyte Primary Cells skin01
|
||
</option>
|
||
|
||
<option value="19" >Fetal Adrenal Gland
|
||
</option>
|
||
|
||
<option value="20" >Fetal Intestine Large
|
||
</option>
|
||
|
||
<option value="21" >Fetal Intestine Small
|
||
</option>
|
||
|
||
<option value="22" >Fetal Muscle Trunk
|
||
</option>
|
||
|
||
<option value="23" >Fetal Muscle Leg
|
||
</option>
|
||
|
||
<option value="24" >Placenta
|
||
</option>
|
||
|
||
<option value="25" >Fetal Stomach
|
||
</option>
|
||
|
||
<option value="26" >Fetal Thymus
|
||
</option>
|
||
|
||
<option value="27" >Gastric
|
||
</option>
|
||
|
||
<option value="28" >Ovary
|
||
</option>
|
||
|
||
<option value="29" >Pancreas
|
||
</option>
|
||
|
||
<option value="30" >Psoas Muscle
|
||
</option>
|
||
|
||
<option value="31" >Small Intestine
|
||
</option>
|
||
|
||
<option value="32" >A549 EtOH 0.02pct Lung Carcinoma Cell Line
|
||
</option>
|
||
|
||
<option value="33" >GM12878 Lymphoblastoid Cells
|
||
</option>
|
||
|
||
<option value="34" >HeLa-S3 Cervical Carcinoma Cell Line
|
||
</option>
|
||
|
||
<option value="35" >HepG2 Hepatocellular Carcinoma Cell Line
|
||
</option>
|
||
|
||
<option value="36" >HMEC Mammary Epithelial Primary Cells
|
||
</option>
|
||
|
||
<option value="37" >HSMM Skeletal Muscle Myoblasts Cells
|
||
</option>
|
||
|
||
<option value="38" >HSMM cell derived Skeletal Muscle Myotubes Cells
|
||
</option>
|
||
|
||
<option value="39" >HUVEC Umbilical Vein Endothelial Primary Cells
|
||
</option>
|
||
|
||
<option value="40" >K562 Leukemia Cells
|
||
</option>
|
||
|
||
<option value="41" >Monocytes-CD14+ RO01746 Primary Cells
|
||
</option>
|
||
|
||
<option value="42" >NH-A Astrocytes Primary Cells
|
||
</option>
|
||
|
||
<option value="43" >NHDF-Ad Adult Dermal Fibroblast Primary Cells
|
||
</option>
|
||
|
||
<option value="44" >NHEK-Epidermal Keratinocyte Primary Cells
|
||
</option>
|
||
|
||
<option value="45" >NHLF Lung Fibroblast Primary Cells
|
||
</option>
|
||
|
||
</select>
|
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<div class="table_cell">
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<div style="margin-top: 69px; margin-left: 105px; width: 95px;">
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|
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|
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<div style="margin-top: 20px;">
|
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<button id="copy_clipboard" class="ui-button ui-widget ui-corner-all ">
|
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Share Link to Clipboard
|
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Share Link via Email
|
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|
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|
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<option value="0">Average</option>
|
||
|
||
<option value="1" >CAPE eQTL
|
||
</option>
|
||
|
||
<option value="2" >CAPE dsQTL
|
||
</option>
|
||
|
||
<option value="3" >deltaSVM
|
||
</option>
|
||
|
||
<option value="4" >CATO
|
||
</option>
|
||
|
||
<option value="5" >DeepSEA
|
||
</option>
|
||
|
||
<option value="6" >CADD
|
||
</option>
|
||
|
||
<option value="7" >LINSIGHT
|
||
</option>
|
||
|
||
<option value="8" >P-Causal
|
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</option>
|
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|
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</select>
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<div class="sgv-nav-button-w">
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|
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|
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<h3 style="margin-top: 15px;text-align: center;">Deleterious SNP scores</h3>
|
||
<div style="font-size: small; text-align: center">Click on the SNP name to get more info and on a column
|
||
header to
|
||
sort<br>
|
||
All methods have been normalized between [0,1]
|
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</div>
|
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<div id="main-SNPTable" style="text-align: center;"></div>
|
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|
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|
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|
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<div id="searching_icon_gwas" style="margin-top: 10px;" class="visible"> Loading GWAS
|
||
<img src="/research/snpdelscore/static/main/images/bigrotation2.gif" alt="Searching ..."/>
|
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|
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<style>
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|
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margin-top: 10px;
|
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}
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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<span class="close invisible">×</span>
|
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<img id="snp-searching_icon" class="invisible" src="/research/snpdelscore/static/main/images/bigrotation2.gif"
|
||
alt="Retrieving data ... "/>
|
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<div id="SNPSingleGraph" class="invisible" snp_name="">
|
||
<h2 id="snp_title"><a id="snp-name-link" href=target="_blank"></a></h2>
|
||
GRCh37.p13,
|
||
<spam id="chr-name"></spam>
|
||
<br>
|
||
Ref/Alt:
|
||
<spam id="snp-ref"></spam>
|
||
<br>
|
||
Location:
|
||
<spam id="snp-loc"></spam>
|
||
<br>
|
||
<div id="tfbs"></div>
|
||
<h3>Deleterious SNP scores</h3>
|
||
<div style="font-size: small;">
|
||
All methods have been normalized between [0,1]
|
||
</div>
|
||
<div id="SNPTable"></div>
|
||
<div class="right aux">
|
||
<a id="download_cvs" style="cursor: pointer;">Download data (CSV Format)</a>
|
||
</div>
|
||
<div id="snp-gwas-div" class="main-gwas-div" page='1'></div>
|
||
<h3>Genome Browser</h3>
|
||
<div id="SeqViewer"></div>
|
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</div>
|
||
</div>
|
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|
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|
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$('#method_id').change(function () {
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