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<h1>Web Services</h1>
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<p>The web services are available to retrieve the data in JSON or HTML formats from a <a href="/research/snpdelscore/static/main/software/snp_rest_client.py" target="_blank">client</a> based in a RESTful
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service</p>
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<h2>RESTful URLs</h2>
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<h3>Retrieve all SNP data</h3>
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<ol>
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<li>Search SNP by ID, HTML format:
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<a href="/research/snpdelscore/api/snp/?name=rs7417106">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snp/?name=rs7417106
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</a>
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</li>
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<li>Search SNP by ID, JSON format:
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<a href="/research/snpdelscore/api/snp.json?name=rs7417106">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snp/?name=rs7417106&format=json
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</a>
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</li>
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</ol>
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<h3>Retrieve calculated data</h3>
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<ol>
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<li>Search SNP by ID, HTML format:
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<a href="/research/snpdelscore/api/snpdata/?name=rs7417106">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?name=rs7417106
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</a>
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</li>
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||
<li>Search SNP by ID, JSON format:
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||
<a href="/research/snpdelscore/api/snpdata.json?name=rs7417106">
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||
https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?name=rs7417106&format=json
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</a>
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</li>
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||
<li>Search SNP by Gene name, HTML format:
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||
<a href="/research/snpdelscore/api/snpdata/?gene_name=DDX11L1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?gene_name=DDX11L1
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</a>
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||
</li>
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||
<li>Search SNP by Gene name, JSON format:
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||
<a href="/research/snpdelscore/api/snpdata.json?gene_name=DDX11L1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?gene_name=DDX11L1&format=json
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</a>
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||
</li>
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||
<li>Search SNPs by chromosome, HTML format:
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<a href="/research/snpdelscore/api/snpdata/?chr=chr1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1
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</a>
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</li>
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||
<li>Search SNPs by chromosome, JSON format:
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||
<a href="/research/snpdelscore/api/snpdata.json?chr=chr1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&format=json
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</a>
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</li>
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||
<li>Search SNPs by chromosome and region, HTML format:
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<a href="/research/snpdelscore/api/snpdata/?chr=chr1&start=0&end=3369847">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&start=0&end=3369847
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||
</a>
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||
</li>
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||
<li>Search SNPs by chromosome and region, JSON format:
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||
<a href="/research/snpdelscore/api/snpdata.json?chr=chr1&start=0&end=3369847">
|
||
https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&start=0&end=3369847&format=json
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</a>
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</li>
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<li>Search SNPs by method: CAPE eQTL (use method's number as shown in <a href="/research/snpdelscore/methods/">Methods</a>),
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HTML format:
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<a href="/research/snpdelscore/api/snpdata/?method=1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?method=1
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</a>
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</li>
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<li>Search SNPs by method: CAPE eQTL (use method's number as shown in <a href="/research/snpdelscore/methods/">Methods</a>),
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JSON format:
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<a href="/research/snpdelscore/api/snpdata.json?method=1">
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https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?method=1&format=json
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</a>
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</li>
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<li>Search SNPs by tissue: GM12878 Lymphoblastoid Cells (use tissue's number as shown in <a
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href="/research/snpdelscore/tissues/">Tissues</a>), HTML format:
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<a href="/research/snpdelscore/api/snpdata/?tissue=33">
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||
https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?tissue=33
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</a>
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||
</li>
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<li>Search SNPs by tissue: GM12878 Lymphoblastoid Cells (use tissue's number as shown in <a
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href="/research/snpdelscore/tissues/">Tissues</a>), JSON format:
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||
<a href="/research/snpdelscore/api/snpdata.json?tissue=33">
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||
https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?tissue=33&format=json
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</a>
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</li>
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||
</ol>
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<h2>Results in JSON format</h2>
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<p>The results in JSON format for the calculated data follows the next syntax:</p>
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||
<pre>
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||
{
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||
"count": 4059,
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||
"next": "https://www.ncbi.nlm.nih.gov/api/snpdata/?page=2",
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||
"previous": null,
|
||
"results": [
|
||
{
|
||
"name": "rs7417106",
|
||
"pos": 911595,
|
||
"ref": "A",
|
||
"alt": "G",
|
||
"chr": "chr1",
|
||
"method": "CAPE eQTL",
|
||
"tissue": "GM12878 Lymphoblastoid Cells",
|
||
"value": 0.00483957
|
||
]
|
||
}
|
||
</pre>
|
||
<h3>Global Fields</h3>
|
||
<ul>
|
||
<li><b>count</b>: total number of SNPs retrieved</li>
|
||
<li><b>next</b>: URL to be used to retrieve the next set of results</li>
|
||
<li><b>previous</b>: URL to be used to retrieve the previous set of results</li>
|
||
<li><b>results</b>: List of results</li>
|
||
</ul>
|
||
<h3>SNP Fields</h3>
|
||
<ul>
|
||
<li><b>name</b>: SNP ID</li>
|
||
<li><b>pos</b>: SNP position</li>
|
||
<li><b>ref</b>: SNP reference</li>
|
||
<li><b>alt</b>: SNP alternative</li>
|
||
<li><b>chr</b>: Chromosome</li>
|
||
<li><b>method</b>: Method used to calculate the prediction</li>
|
||
<li><b>tissue</b>: Tissue used</li>
|
||
<li><b>value</b>: Prediction value</li>
|
||
</ul>
|
||
<h2>Combining options</h2>
|
||
<p>All options can be used together to retrieve the specific data. For example, to retrieve the list of SNPs in
|
||
the
|
||
region: <b>chr5:5689-758812640</b> calculated with the method <b>CAPE eQTL</b></p>
|
||
<a href="/research/snpdelscore/api/snpdata/?chr=chr5&start=5689&end=758812&&method=1">
|
||
https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr5&start=5689&end=758812640&&method=1
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