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J - Translation, ribosomal structure and biogenesis</a>
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A - RNA processing and modification</a>
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K - Transcription</a>
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L - Replication, recombination and repair</a>
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Y - Nuclear structure</a>
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M - Cell wall/membrane/envelope biogenesis</a>
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W - Extracellular structures</a>
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U - Intracellular trafficking, secretion, and vesicular transport</a>
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C - Energy production and conversion</a>
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G - Carbohydrate transport and metabolism</a>
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E - Amino acid transport and metabolism</a>
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F - Nucleotide transport and metabolism</a>
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H - Coenzyme transport and metabolism</a>
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I - Lipid transport and metabolism</a>
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P - Inorganic ion transport and metabolism</a>
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Q - Secondary metabolites biosynthesis, transport and catabolism</a>
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R - General function prediction only</a>
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S - Function unknown</a>
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role="menuitem" tabindex="-1"
|
||
id="ui-ncbimenu-1_5">
|
||
COG Project
|
||
</a>
|
||
</li>
|
||
<li role="presentation" class="no-submenu">
|
||
<a href="mailto:cogs@ncbi.nlm.nih.gov" title="Web Services" class="uppercase"
|
||
role="menuitem" tabindex="-1"
|
||
id="ui-ncbimenu-1_6">
|
||
Contact
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
<main id="main_content" accesskey="3">
|
||
|
||
|
||
<section class="usa-section cog_top_section">
|
||
<div class="usa-grid">
|
||
|
||
|
||
<h1>Pathways</h1>
|
||
<div style="float: right; clear: both;margin-top: -46px;">
|
||
<a class="usa-button" href="#" onclick="download_table_as_tsv('pathway_result_table');">Download</a>
|
||
</div>
|
||
<div class="ui-ncbigrid-outer-div" style="font-size: 80%;">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table id="pathway_result_table" data-jig="ncbigrid">
|
||
<thead>
|
||
<tr>
|
||
<th>Pathway</th>
|
||
<th>No. COGs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/16S%20rRNA%20modification/">16S rRNA modification</a></td>
|
||
<td>16</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/23S%20rRNA%20modification/">23S rRNA modification</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/A/V-type%20ATP%20synthase/">A/V-type ATP synthase</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Aminoacyl-tRNA%20synthetases/">Aminoacyl-tRNA synthetases</a></td>
|
||
<td>26</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Archaeal%20ribosomal%20proteins/">Archaeal ribosomal proteins</a></td>
|
||
<td>33</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Archaella/">Archaella</a></td>
|
||
<td>14</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Arginine%20biosynthesis/">Arginine biosynthesis</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Aromatic%20amino%20acid%20biosynthesis/">Aromatic amino acid biosynthesis</a></td>
|
||
<td>23</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Asparagine%20biosynthesis/">Asparagine biosynthesis</a></td>
|
||
<td>2</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Biotin%20biosynthesis/">Biotin biosynthesis</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/CRISPR-Cas%20system/">CRISPR-Cas system</a></td>
|
||
<td>46</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Cobalamine/B12%20biosynthesis/">Cobalamine/B12 biosynthesis</a></td>
|
||
<td>24</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Cysteine%20biosynthesis/">Cysteine biosynthesis</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Entner-Doudoroff%20pathway/">Entner-Doudoroff pathway</a></td>
|
||
<td>1</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Fatty%20acid%20biosynthesis/">Fatty acid biosynthesis</a></td>
|
||
<td>15</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Flp/Tad%20pili/">Flp/Tad pili</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/FoF1-type%20ATP%20synthase/">FoF1-type ATP synthase</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Folate%20biosynthesis/">Folate biosynthesis</a></td>
|
||
<td>9</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Gluconeogenesis/">Gluconeogenesis</a></td>
|
||
<td>6</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Glutamine%20biosynthesis/">Glutamine biosynthesis</a></td>
|
||
<td>6</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Glycine%20cleavage/">Glycine cleavage</a></td>
|
||
<td>5</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Glycolysis/">Glycolysis</a></td>
|
||
<td>18</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Heme%20biosynthesis/">Heme biosynthesis</a></td>
|
||
<td>14</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Histidine%20biosynthesis/">Histidine biosynthesis</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Isoleucine,%20leucine,%20valine%20biosynthesis/">Isoleucine, leucine, valine biosynthesis</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Isoprenoid%20biosynthesis/">Isoprenoid biosynthesis</a></td>
|
||
<td>18</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Lipid%20A%20biosynthesis/">Lipid A biosynthesis</a></td>
|
||
<td>9</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Lipoate%20biosynthesis/">Lipoate biosynthesis</a></td>
|
||
<td>3</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Lysine%20biosynthesis/">Lysine biosynthesis</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Menaquinone%20biosynthesis/">Menaquinone biosynthesis</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Methionine%20biosynthesis/">Methionine biosynthesis</a></td>
|
||
<td>10</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Molybdopterin%20biosynthesis/">Molybdopterin biosynthesis</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Mureine%20biosynthesis/">Mureine biosynthesis</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/NAD%20biosynthesis/">NAD biosynthesis</a></td>
|
||
<td>9</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/NADH%20dehydrogenase/">NADH dehydrogenase</a></td>
|
||
<td>15</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Na+-translocating%20Fd:NADH%20oxidoreductase/">Na+-translocating Fd:NADH oxidoreductase</a></td>
|
||
<td>6</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Na+-translocating%20NADH%20dehydrogenase/">Na+-translocating NADH dehydrogenase</a></td>
|
||
<td>7</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Non-phosphorylated%20Entner-Doudoroff%20pathway/">Non-phosphorylated Entner-Doudoroff pathway</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pantothenate/CoA%20biosynthesis/">Pantothenate/CoA biosynthesis</a></td>
|
||
<td>13</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pentose%20phosphate%20pathway/">Pentose phosphate pathway</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Phospholipid%20biosynthesis/">Phospholipid biosynthesis</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Photosystem%20I/">Photosystem I</a></td>
|
||
<td>17</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Photosystem%20II/">Photosystem II</a></td>
|
||
<td>26</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Proline%20biosynthesis/">Proline biosynthesis</a></td>
|
||
<td>4</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Proline%20degradation/">Proline degradation</a></td>
|
||
<td>2</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Purine%20biosynthesis/">Purine biosynthesis</a></td>
|
||
<td>20</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Purine%20salvage/">Purine salvage</a></td>
|
||
<td>5</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pyridoxal%20phosphate%20biosynthesis/">Pyridoxal phosphate biosynthesis</a></td>
|
||
<td>8</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pyrimidine%20biosynthesis/">Pyrimidine biosynthesis</a></td>
|
||
<td>10</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pyrimidine%20degradation/">Pyrimidine degradation</a></td>
|
||
<td>7</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pyrimidine%20salvage/">Pyrimidine salvage</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Pyruvate%20oxidation/">Pyruvate oxidation</a></td>
|
||
<td>10</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/RNA%20polymerase/">RNA polymerase</a></td>
|
||
<td>16</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Riboflavin/FAD%20biosynthesis/">Riboflavin/FAD biosynthesis</a></td>
|
||
<td>12</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Ribosome%2030S%20subunit/">Ribosome 30S subunit</a></td>
|
||
<td>21</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Ribosome%2050S%20subunit/">Ribosome 50S subunit</a></td>
|
||
<td>33</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Sec%20pathway/">Sec pathway</a></td>
|
||
<td>9</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Serine%20biosynthesis/">Serine biosynthesis</a></td>
|
||
<td>4</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/TCA%20cycle/">TCA cycle</a></td>
|
||
<td>16</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/TCA%20cycle,%20glyoxylate%20bypass/">TCA cycle, glyoxylate bypass</a></td>
|
||
<td>2</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Thiamine%20biosynthesis/">Thiamine biosynthesis</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Threonine%20biosynthesis/">Threonine biosynthesis</a></td>
|
||
<td>3</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Thymidylate%20biosynthesis/">Thymidylate biosynthesis</a></td>
|
||
<td>7</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Translation%20factors/">Translation factors</a></td>
|
||
<td>21</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20II%20secretion/Type%20IV%20pili/">Type II secretion/Type IV pili</a></td>
|
||
<td>27</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20III%20secretion%20system/">Type III secretion system</a></td>
|
||
<td>37</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20IV%20secretion%20system/">Type IV secretion system</a></td>
|
||
<td>18</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20IVB%20secretion/DNA%20transfer%20system/">Type IVB secretion/DNA transfer system</a></td>
|
||
<td>7</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20IX%20secretion/gliding%20motility%20system/">Type IX secretion/gliding motility system</a></td>
|
||
<td>17</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20V%20secretion%20system/">Type V secretion system</a></td>
|
||
<td>4</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20VI%20secretion%20system/">Type VI secretion system</a></td>
|
||
<td>25</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20VII%20secretion%20system/">Type VII secretion system</a></td>
|
||
<td>11</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20VIII%20secretion%20system/">Type VIII secretion system</a></td>
|
||
<td>4</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Type%20X%20secretion%20system/">Type X secretion system</a></td>
|
||
<td>6</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/Ubiquinone%20biosynthesis/">Ubiquinone biosynthesis</a></td>
|
||
<td>9</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a href="/research/cog/pathway/tRNA%20modification/">tRNA modification</a></td>
|
||
<td>67</td>
|
||
</tr>
|
||
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
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