539 lines
25 KiB
HTML
539 lines
25 KiB
HTML
<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta charset="UTF-8">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<meta name="HandheldFriendly" content="True">
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<meta name="MobileOptimized" content="320">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
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<!-- CSS -->
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<link href="/genome/browse/static/main/styles/uswds-not-greedy.min.css" rel="stylesheet" type="text/css"/>
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<link rel="stylesheet" href="/genome/browse/static/django_uswds/uswds/css/uswds.scoped.css">
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<link rel="stylesheet" href="/genome/browse/static/nwds/css/nwds.css" />
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<link rel="stylesheet" href="/genome/browse/static/nwds/css/header.css">
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<link rel="stylesheet" href="/genome/browse/static/nwds/css/footer.css">
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<link rel="stylesheet" href="/genome/browse/static/nwds/css/form.css">
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<title>
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Genome List -
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Genome - NCBI
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</title>
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<meta name="ncbi_google_analytics_object" content="ga" />
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<meta name="ncbi_is_ga_pageview_enabled" content="false" />
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<script src="/genome/browse/static/main/scripts/redirect-to-datasets.js" type="text/javascript" charset="utf-8"></script>
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<link rel="stylesheet" href="/genome/browse/static/main/app/styles/vendor.6db4c149.css">
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<link rel="stylesheet" href="/genome/browse/static/main/styles/breadcrumbs.css">
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<link rel="stylesheet" href="/genome/browse/static/main/styles/genomebrowser.css">
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<!-- Logging params: Pinger defaults -->
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<meta name="ncbi_app" content="genome-browser" />
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<meta name="ncbi_pdid" content="index" />
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<meta name="ncbi_phid" content="322C300D9B3038150000619152DF6457.1.m_1" />
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<meta name="ncbi_pdid" content="genome-browser"/>
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</head>
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<body>
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<div class="us">
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<a class="usa-skipnav" href="#maincontent">
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Skip to main page content
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</a>
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<!-- ========== BEGIN HEADER ========== -->
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<section class="usa-banner">
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<div class="usa-accordion">
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<header class="usa-banner-header">
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<div class="usa-grid usa-banner-inner">
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<img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag" />
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<p>An official website of the United States government</p>
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<button
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class="usa-accordion-button usa-banner-button"
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aria-expanded="false"
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aria-controls="gov-banner-top"
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>
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<span class="usa-banner-button-text">Here's how you know</span>
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<div
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class="usa-banner-content usa-grid usa-accordion-content"
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id="gov-banner-top"
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>
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<div class="usa-banner-guidance-gov usa-width-one-half">
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<img
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class="usa-banner-icon usa-media_block-img"
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src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg"
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alt="Dot gov"
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/>
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<div class="usa-media_block-body">
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<p>
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<strong>The .gov means it’s official.</strong>
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<br />
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Federal government websites often end in .gov or .mil. Before
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sharing sensitive information, make sure you’re on a federal
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government site.
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<div class="usa-banner-guidance-ssl usa-width-one-half">
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<img
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class="usa-banner-icon usa-media_block-img"
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src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-https.svg"
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alt="Https"
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/>
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<div class="usa-media_block-body">
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<p>
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<strong>The site is secure.</strong>
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<br />
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The <strong>https://</strong> ensures that you are connecting to the
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official website and that any information you provide is encrypted
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and transmitted securely.
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</section>
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<div class="usa-overlay"></div>
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<header class="ncbi-header" role="banner" data-section="Header">
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<div class="usa-width-one-whole">
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<div class="ncbi-header__logo">
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<a href="https://www.ncbi.nlm.nih.gov/" class="logo" aria-label="NCBI Logo" data-ga-action="click_image" data-ga-label="NIH NLM Logo">
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<img src="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/logos/AgencyLogo.svg" alt="NIH NLM Logo" />
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<a id="account_login" href="https://account.ncbi.nlm.nih.gov" class="usa-button header-button" style="display:none" data-ga-action="open_menu" data-ga-label="account_menu">Log in</a>
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aria-controls="account_popup">
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<span class="fa fa-user" aria-hidden="true"></span>
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<span class="username desktop-only" aria-hidden="true" id="uname_short"></span>
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<span class="sr-only">Show account info</span>
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<div class="ncbi-popup account-popup" id="account_popup" aria-hidden="true">
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<button class="ncbi-close-button" data-ga-action="close_menu" data-ga-label="account_menu"><span class="fa fa-times"></span><span class="usa-sr-only">Close</span></button>
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<h4>Account</h4>
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</div>
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<div class="account-user-info">
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Logged in as:<br/>
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<b><span class="username" id="uname_long">username</span></b>
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</div>
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<div class="account-links">
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<ul class="usa-unstyled-list">
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<li><a id="account_myncbi" href="/myncbi/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_myncbi">Dashboard</a></li>
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<li><a id="account_pubs" href="/myncbi/collections/bibliography/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_pubs">Publications</a></li>
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</div>
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</header>
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<div role="navigation" aria-label="access keys">
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<a id="nws_header_accesskey_0" href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0" tabindex="-1">Access keys</a>
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<a id="nws_header_accesskey_1" href="https://www.ncbi.nlm.nih.gov" class="usa-sr-only" accesskey="1" tabindex="-1">NCBI Homepage</a>
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<a id="nws_header_accesskey_2" href="/myncbi/" class="set-base-url usa-sr-only" accesskey="2" tabindex="-1">MyNCBI Homepage</a>
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<a id="nws_header_accesskey_3" href="#maincontent" class="usa-sr-only" accesskey="3" tabindex="-1">Main Content</a>
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<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
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</div>
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<section data-section="Alerts">
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<div class="ncbi-alerts-placeholder"></div>
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</section>
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<!-- ========== END HEADER ========== -->
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</div>
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<!--app-specific header, something that might want to take full width of screen -->
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<!-- asign css class in case app will need to alter styles of this div -->
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<div id="maincontent" class="ncbi-base-page-container">
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<genome-table-banner></genome-table-banner>
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<div class="us container" >
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<div class="container">
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<div>
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<h2 style="text-align: left;font-size: 1.2307em;line-height: 1.125;margin: 1.125em 0 .5625em;color: #000;">
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Important Update
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</h2>
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Effective June 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on
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the NCBI Datasets taxonomy pages.
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<a href="https://ncbiinsights.ncbi.nlm.nih.gov/2023/10/18/ncbi-datasets-access-sequence-data/">Learn more</a>.
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</div>
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</div>
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</div>
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<div ng-app="genomesApp">
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<div ui-view>
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</div>
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</div>
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<!-- wrap areas that require uswds styles in div class="us" -->
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<div class="hpbox" id="div_hpbox" style="display:none;width:420px;height:470px" onclick="HitPlotClicked()">
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<span id="title_hpbox">Genome neighbors</span>
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<br/>
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<a id="scope_hpbox" target="_blank">Show the whole species neighbor tree</a>
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<div id="TreeViewerFrame" class="TreeViewerFrame" style="width:400px;height:400px">
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<div id="TreeViewer0" class="TreeViewerApp" style="width:400px;height:400px">
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<a href="?embedded=true¬oolbar=true&nostatusbar=true"></a>
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</div>
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</div>
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</div>
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</div>
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<div class="us">
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<!-- ========== BEGIN FOOTER ========== -->
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<footer>
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<section class="icon-section">
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<div id="icon-section-header" class="icon-section_header">Follow NCBI</div>
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<title>Twitter</title>
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<g id="twitterx1008">
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aria-label="LinkedIn"><svg data-name="Layer 1" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 300 300">
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<title>LinkedIn</title>
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<path class="cls-11"
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d="M101.64,243.37H57.79v-114h43.85Zm-22-131.54h-.26c-13.25,0-21.82-10.36-21.82-21.76,0-11.65,8.84-21.15,22.33-21.15S101.7,78.72,102,90.38C102,101.77,93.4,111.83,79.63,111.83Zm100.93,52.61A17.54,17.54,0,0,0,163,182v61.39H119.18s.51-105.23,0-114H163v13a54.33,54.33,0,0,1,34.54-12.66c26,0,44.39,18.8,44.39,55.29v58.35H198.1V182A17.54,17.54,0,0,0,180.56,164.44Z">
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<a class="footer-icon" id="footer_github" href="https://github.com/ncbi" aria-label="GitHub"><svg
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<style>
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.cls-11,
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.cls-12 {
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fill: #737373;
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.cls-11 {
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fill-rule: evenodd;
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</defs>
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<title>GitHub</title>
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<path class="cls-12"
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d="M116.36,219.92c0,.87-1,1.59-2.24,1.61s-2.29-.68-2.3-1.54,1-1.59,2.26-1.61,2.28.67,2.28,1.54Zm0,0">
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<path class="cls-12"
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|
||
<svg version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px"
|
||
y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
||
<style type="text/css">
|
||
.st10 {
|
||
fill: #FFFFFF;
|
||
}
|
||
|
||
.st110 {
|
||
fill: none;
|
||
stroke: #FFFFFF;
|
||
stroke-width: 8;
|
||
stroke-miterlimit: 10;
|
||
}
|
||
</style>
|
||
<title>SM-Facebook</title>
|
||
<g>
|
||
<g>
|
||
<path class="st10" d="M159,99.1h-24V88.4c0-5,3.3-6.2,5.7-6.2h16.8V60l-24.4-0.1c-22.1,0-26.2,16.5-26.2,27.1v12.1H90v22.5h16.9
|
||
v67.5H135v-67.5h21.7L159,99.1z"></path>
|
||
</g>
|
||
</g>
|
||
<circle class="st110" cx="123.6" cy="123.2" r="108.2"></circle>
|
||
</svg>
|
||
</a></li>
|
||
<li class="list-inline-item"><a href="https://www.youtube.com/user/NLMNIH" aria-label="Youtube"
|
||
target="_blank" rel="noopener noreferrer"><svg version="1.1" xmlns="http://www.w3.org/2000/svg"
|
||
xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px" viewBox="0 0 249 249"
|
||
style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
||
<title>SM-Youtube</title>
|
||
<style type="text/css">
|
||
.st4 {
|
||
fill: none;
|
||
stroke: #FFFFFF;
|
||
stroke-width: 8;
|
||
stroke-miterlimit: 10;
|
||
}
|
||
|
||
.st5 {
|
||
fill: #FFFFFF;
|
||
}
|
||
</style>
|
||
<circle class="st4" cx="124.2" cy="123.4" r="108.2"></circle>
|
||
<g transform="translate(0,-952.36218)">
|
||
<path class="st5"
|
||
d="M88.4,1037.4c-10.4,0-18.7,8.3-18.7,18.7v40.1c0,10.4,8.3,18.7,18.7,18.7h72.1c10.4,0,18.7-8.3,18.7-18.7
|
||
v-40.1c0-10.4-8.3-18.7-18.7-18.7H88.4z M115.2,1058.8l29.4,17.4l-29.4,17.4V1058.8z"></path>
|
||
</g>
|
||
</svg></a></li>
|
||
</ul>
|
||
</div>
|
||
<div class="col-lg-3 col-12">
|
||
<p class="address_footer text-white">National Library of Medicine<br>
|
||
<a href="https://www.google.com/maps/place/8600+Rockville+Pike,+Bethesda,+MD+20894/@38.9959508,-77.101021,17z/data=!3m1!4b1!4m5!3m4!1s0x89b7c95e25765ddb:0x19156f88b27635b8!8m2!3d38.9959508!4d-77.0988323"
|
||
class="text-white" target="_blank" rel="noopener noreferrer">8600 Rockville Pike<br>
|
||
Bethesda, MD 20894</a></p>
|
||
</div>
|
||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a href="https://www.nlm.nih.gov/web_policies.html" class="text-white">Web Policies</a><br>
|
||
<a href="https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office"
|
||
class="text-white">FOIA</a><br>
|
||
<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html" class="text-white" id="vdp">HHS Vulnerability Disclosure</a></p>
|
||
</div>
|
||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a class="supportLink text-white" href="https://support.nlm.nih.gov/">Help</a><br>
|
||
<a href="https://www.nlm.nih.gov/accessibility.html" class="text-white">Accessibility</a><br>
|
||
<a href="https://www.nlm.nih.gov/careers/careers.html" class="text-white">Careers</a></p>
|
||
</div>
|
||
</div>
|
||
<div class="row">
|
||
<div class="col-lg-12 centered-lg">
|
||
<nav class="bottom-links">
|
||
<ul class="mt-3">
|
||
<li>
|
||
<a class="text-white" href="//www.nlm.nih.gov/">NLM</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white"
|
||
href="https://www.nih.gov/">NIH</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.hhs.gov/">HHS</a>
|
||
</li>
|
||
<li>
|
||
<a
|
||
class="text-white" href="https://www.usa.gov/">USA.gov</a>
|
||
</li>
|
||
</ul>
|
||
</nav>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
</footer>
|
||
<!-- ========== END FOOTER ========== -->
|
||
<!-- javascript to inject NWDS meta tags. Note: value of nwds_version is updated by "npm version" command -->
|
||
|
||
<script type="text/javascript">
|
||
var nwds_version = "1.2.3";
|
||
|
||
var meta_nwds_ver = document.createElement('meta');
|
||
meta_nwds_ver.name = 'ncbi_nwds_ver';
|
||
meta_nwds_ver.content = nwds_version;
|
||
document.getElementsByTagName('head')[0].appendChild(meta_nwds_ver);
|
||
|
||
var meta_nwds = document.createElement('meta');
|
||
meta_nwds.name = 'ncbi_nwds';
|
||
meta_nwds.content = 'yes';
|
||
document.getElementsByTagName('head')[0].appendChild(meta_nwds);
|
||
|
||
var alertsUrl = "/core/alerts/alerts.js";
|
||
if (typeof ncbiBaseUrl !== 'undefined') {
|
||
alertsUrl = ncbiBaseUrl + alertsUrl;
|
||
}
|
||
</script>
|
||
|
||
</div>
|
||
<script type="text/javascript">
|
||
__ncbi_sg_pingCallbacks_click_genome_browser = function(data, evtObj, type) {
|
||
var extraTrackingData = {};
|
||
if (evtObj && evtObj.target) {
|
||
var target = $(evtObj.target);
|
||
if (target.is('span.ui-icon') && target.parent().is('a') && target.parent().parent().is("li.ui-element")) {
|
||
//console.info("'+/-' button was clicked in the column chooser for column named : " + target.parent().parent().text());
|
||
extraTrackingData = {
|
||
"label": target.parent().parent().text(),
|
||
"action": "column_chooser"
|
||
};
|
||
}
|
||
else if(target.is('a.jqgrid-ng-scope.page_nav.ng-scope') || target.is('div#overview_count') || target.is('div#eukaryotes_count') || target.is('div#prokaryotes_count') ||
|
||
target.is('div#viruses_count')|| target.is('div#plasmids_count') || target.is('div#organelles_count')) {
|
||
extraTrackingData = {
|
||
"label": (data.action !== undefined) ? data.action : data.link_text.replace('%20',' '),
|
||
"action": "report-switch"
|
||
};
|
||
}
|
||
else if((data.event==='click' && data.action==='Download') || (data.jsevent==='click' && data.link_text==='Download')) {
|
||
extraTrackingData = {
|
||
"label": "Download",
|
||
"action": "button-click"
|
||
};
|
||
}
|
||
else if((data.event==='click' && data.action===' Filters') || (data.jsevent==='click' && data.link_text==='%20Filters')) {
|
||
extraTrackingData = {
|
||
"label": "Filters",
|
||
"action": "button-click"
|
||
};
|
||
}
|
||
else if((data.event==='click' && data.action===' Columns') || (data.jsevent==='click' && data.link_text==='%20Columns')) {
|
||
extraTrackingData = {
|
||
"label": "Columns",
|
||
"action": "button-click"
|
||
};
|
||
}
|
||
else if(target.is('a') && ((data.event==='click' && data.action==='Download Reports from FTP site') || (data.jsevent==='click' && data.link_text==='Download%20Reports%20from%20FTP%20site'))) {
|
||
extraTrackingData = {
|
||
"label": "FTP",
|
||
"action": "button-click"
|
||
};
|
||
}
|
||
else if((data.event==='click' && data.action===' Search') || (data.jsevent==='click' && data.link_text==='%20Search')) {
|
||
extraTrackingData = {
|
||
"label": "Search",
|
||
"action": "button-click"
|
||
};
|
||
}
|
||
else {
|
||
//TODO: we can add more falvor of tracking here
|
||
console.info("not yet captured the data being clicked clicked", data, evtObj.target);
|
||
|
||
}
|
||
}
|
||
var pagename = '';
|
||
var url = evtObj.target.baseURI;
|
||
var pos = url.indexOf('#!/');
|
||
if(pos > 0) {
|
||
pagename = url.substr(pos + 3, url.substr(pos + 3, 99).indexOf('/'))
|
||
}
|
||
if (type === 'stat') { //pingger
|
||
return {
|
||
link_text: extraTrackingData.label,
|
||
genome_browser_link_type: extraTrackingData.action,
|
||
genome_browser_page: pagename
|
||
};
|
||
}
|
||
return extraTrackingData;
|
||
}
|
||
</script>
|
||
|
||
|
||
|
||
<script src="/genome/browse/static/django_uswds/uswds/js/uswds.js"></script>
|
||
<script src="/genome/browse/static/nwds/js/nwds.js" type="text/javascript"> </script>
|
||
<script src="/genome/browse/static/nwds/js/header.js" type="text/javascript"> </script>
|
||
<script src="/genome/browse/static/nwds/js/ncbipopup.js" type="text/javascript"> </script>
|
||
<script src="/genome/browse/static/nwds/js/ncbiclearbutton.js" type="text/javascript"> </script>
|
||
<script src="/genome/browse/static/nwds/js/override-uswds.js" type="text/javascript"> </script>
|
||
<script src="/genome/browse/static/nwds/js/ncbifeedback.js" type="text/javascript"> </script>
|
||
|
||
|
||
|
||
<script type="text/javascript" src="/genome/browse/static/nwds/js/header.js"> </script>
|
||
|
||
<script type="text/javascript" src="https://www.ncbi.nlm.nih.gov/core/pinger/pinger.js"> </script>
|
||
|
||
|
||
|
||
</body>
|
||
</html>
|