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HTML
842 lines
No EOL
34 KiB
HTML
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<!DOCTYPE html>
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<html lang="en" >
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<head >
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<meta charset="UTF-8">
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||
<meta http-equiv="X-UA-Compatible" content="IE=edge">
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||
|
||
<!-- Mobile properties -->
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||
<meta name="HandheldFriendly" content="True">
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||
<meta name="MobileOptimized" content="320">
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||
<meta name="viewport" content="width=device-width, initial-scale=1.0">
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||
|
||
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||
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||
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||
<link rel="stylesheet" href="/dbvar/browse/static/uswds/css/uswds.css" />
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<link rel="stylesheet" href="/dbvar/browse/static/nwds/css/nwds.css" />
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<link rel="stylesheet" href="/dbvar/browse/static/nwds/css/header.css" />
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||
<link rel="stylesheet" href="/dbvar/browse/static/nwds/css/footer.css" />
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<link rel="stylesheet" href="/dbvar/browse/static/nwds/css/form.css" />
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<link rel="stylesheet" href="/dbvar/browse/static/gbc/css/ce85dbe9.gb-all.css" />
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<link rel="stylesheet" type="text/css" href="/dbvar/browse/static/css/f54b7134.dbvar-start.css"/>
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<title>Genome Browser - dbVar - NCBI</title>
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<!-- Favicons -->
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<link rel="shortcut icon" type="image/ico" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon.ico" />
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<link rel="icon" type="image/png" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon.png" />
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<!-- 192x192, as recommended for Android
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http://updates.html5rocks.com/2014/11/Support-for-theme-color-in-Chrome-39-for-Android
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-->
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<link rel="icon" type="image/png" sizes="192x192" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-192.png" />
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<!-- 57x57 (precomposed) for iPhone 3GS, pre-2011 iPod Touch and older Android devices -->
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<link rel="apple-touch-icon-precomposed" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-57.png">
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<!-- 72x72 (precomposed) for 1st generation iPad, iPad 2 and iPad mini -->
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<link rel="apple-touch-icon-precomposed" sizes="72x72" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-72.png">
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<!-- 114x114 (precomposed) for iPhone 4, 4S, 5 and post-2011 iPod Touch -->
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<link rel="apple-touch-icon-precomposed" sizes="114x114" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-114.png">
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<!-- 144x144 (precomposed) for iPad 3rd and 4th generation -->
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<link rel="apple-touch-icon-precomposed" sizes="144x144" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-144.png">
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<meta name="robots" content="index, follow"/>
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<!-- Logging params: Pinger defaults -->
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<meta name="ncbi_app" content="dbVarBrowser" />
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<meta name="ncbi_pdid" content="index" />
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<meta name="ncbi_phid" content="939B8FCEB20BE4F500002A76623A408B.1.m_4" />
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<meta name="ncbi_page" content="home"/>
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<meta name="ncbi_op" content="page_view"/>
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<meta name="description" content="Explore genetic variations and their clinical significance. Search known variants by gene, phenotype or location; or upload and compare your own data."/>
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<script type="text/javascript">/** dbVar home config settings */
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window.GB = {
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config: {
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config: {
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history: true,
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localStorage: true,
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placed: true,
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chrom_only: true,
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primary_only: false,
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resolve_chr: false
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},
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defaults: {
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"gbc-version": "2.7",
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"tms-version": "0.7",
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resource: "GDV_variation",
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context: "dbvar-home",
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taxid: "9606",
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app: "dbVarBrowser",
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version: "2.8.2",
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resolve_chr: true,
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default_url: "/dbvar/browse/"
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},
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navigator: {
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version: "105",
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top_section: 1
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},
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state: {
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preserveURL: true,
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history: false
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},
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search: {
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columns: "name,location",
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autoselect: true,
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loadQuery: false,
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tabs: [{
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name: "Genes",
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title: "Genes",
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url: "/projects/genome/browser/locsearch_gene.cgi"
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}, {
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name: "Other",
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title: "Other features",
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url: "/projects/genome/browser/locsearch_other.cgi"
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}]
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},
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sv_wrap: {
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encodeShown: false
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},
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defs: [{
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"taxid":9606,
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"name":"Homo sapiens",
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"assemblies":[
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{"acc":"GCF_000001405.39","name":"GRCh38"},
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{"acc":"GCF_000001405.25","name":"GRCh37"},
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{"acc":"GCF_000001405.12","name":"NCBI36"},
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{"acc":"GCF_000001405.11","name":"NCBI35"},
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{"acc":"GCF_000001405.10","name":"NCBI34"}
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]
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},
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{
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"taxid":9598,
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"name":"Pan troglodytes",
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"assemblies":[
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{"acc":"GCF_000001515.7","name":"Pan_tro 3.0"},
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{"acc":"GCF_000001515.6","name":"Pan_troglodytes-2.1.4"},
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{"acc":"GCA_000001515.3","name":"Pan_troglodytes-2.1.3"}
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]
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},{
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"taxid":9595,
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"name":"Gorilla gorilla gorilla",
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"assemblies":[
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{"acc":"GCF_000151905.1","name":"gorGor3.1"}
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]
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},{
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"taxid":9601,
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"name":"Pongo abelii",
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"assemblies":[
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{"acc":"GCA_000001545.3","name":"P_pygmaeus_2.0.2"}
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]
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}]
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||
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}
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||
};
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const baseURL = '/dbvar/browse';
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</script>
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<script type="text/javascript" src="/dbvar/browse/static/js/jquery.min.js"></script>
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<script src="/projects/ideogram/3.1/js/ideo.js"></script>
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<script type="text/javascript" src="/projects/genome/uud/js/uud.bbab5365.js"></script>
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<script type="text/javascript" src="/projects/genome/trackmgr/0.7/js/tms.c9bea24e.js"></script>
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<script type="text/javascript" src="/dbvar/browse/static/gbc/js/0721c2e0.gbx-base.js"></script>
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<script type="text/javascript" src="/dbvar/browse/static/js/71b798eb.dbvar-start.js"></script>
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||
|
||
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||
<script type="text/javascript">
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||
GB.BlastHelper = {
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||
prototype: {}
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||
};
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||
GB.GBConfig.prototype.updateDefaults = function(){}
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||
</script>
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||
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||
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<script type="text/javascript" src="/dbvar/browse/static/gbc/js/327e9901.gbx-dbvar.js"></script>
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||
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||
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||
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||
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||
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||
<link rel="stylesheet" href="/dbvar/browse/static/gbc/css/7399fd4e.gb-fix.css" />
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||
<script type="text/javascript" src="/dbvar/browse/static/gbc/js/1f8be2ad.gbx-fix.js"></script>
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||
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||
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||
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||
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||
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||
</head>
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||
<body class="gb-browser dbvar gb-layout2 generic" >
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||
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||
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||
<a class="usa-skipnav" href="#main_content">Skip to main page content</a>
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||
|
||
<!-- ========== BEGIN HEADER ========== -->
|
||
<section class="usa-banner">
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||
<div class="usa-accordion">
|
||
<header class="usa-banner-header">
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||
<div class="usa-grid usa-banner-inner">
|
||
<img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag" />
|
||
<p>An official website of the United States government</p>
|
||
<button
|
||
class="usa-accordion-button usa-banner-button"
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||
aria-expanded="false"
|
||
aria-controls="gov-banner-top"
|
||
>
|
||
<span class="usa-banner-button-text">Here's how you know</span>
|
||
</button>
|
||
</div>
|
||
</header>
|
||
<div
|
||
class="usa-banner-content usa-grid usa-accordion-content"
|
||
id="gov-banner-top"
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||
>
|
||
<div class="usa-banner-guidance-gov usa-width-one-half">
|
||
<img
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||
class="usa-banner-icon usa-media_block-img"
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||
src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg"
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||
alt="Dot gov"
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||
/>
|
||
<div class="usa-media_block-body">
|
||
<p>
|
||
<strong>The .gov means it’s official.</strong>
|
||
<br />
|
||
Federal government websites often end in .gov or .mil. Before
|
||
sharing sensitive information, make sure you’re on a federal
|
||
government site.
|
||
</p>
|
||
</div>
|
||
</div>
|
||
<div class="usa-banner-guidance-ssl usa-width-one-half">
|
||
<img
|
||
class="usa-banner-icon usa-media_block-img"
|
||
src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-https.svg"
|
||
alt="Https"
|
||
/>
|
||
<div class="usa-media_block-body">
|
||
<p>
|
||
<strong>The site is secure.</strong>
|
||
<br />
|
||
The <strong>https://</strong> ensures that you are connecting to the
|
||
official website and that any information you provide is encrypted
|
||
and transmitted securely.
|
||
</p>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
<div class="usa-overlay"></div>
|
||
<header class="ncbi-header" role="banner" data-section="Header">
|
||
|
||
<div class="usa-grid">
|
||
<div class="usa-width-one-whole">
|
||
|
||
<div class="ncbi-header__logo">
|
||
<a href="https://www.ncbi.nlm.nih.gov/" class="logo" aria-label="NCBI Logo" data-ga-action="click_image" data-ga-label="NIH NLM Logo">
|
||
<img src="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/logos/AgencyLogo.svg" alt="NIH NLM Logo" />
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||
</a>
|
||
</div>
|
||
|
||
<div class="ncbi-header__account">
|
||
<a id="account_login" href="https://account.ncbi.nlm.nih.gov" class="usa-button header-button" style="display:none" data-ga-action="open_menu" data-ga-label="account_menu">Log in</a>
|
||
<button id="account_info" class="header-button" style="display:none"
|
||
aria-controls="account_popup">
|
||
<span class="fa fa-user" aria-hidden="true"></span>
|
||
<span class="username desktop-only" aria-hidden="true" id="uname_short"></span>
|
||
<span class="sr-only">Show account info</span>
|
||
</button>
|
||
</div>
|
||
|
||
<div class="ncbi-popup-anchor">
|
||
<div class="ncbi-popup account-popup" id="account_popup" aria-hidden="true">
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||
<div class="ncbi-popup-head">
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||
<button class="ncbi-close-button" data-ga-action="close_menu" data-ga-label="account_menu"><span class="fa fa-times"></span><span class="usa-sr-only">Close</span></button>
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||
<h4>Account</h4>
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||
</div>
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||
<div class="account-user-info">
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||
Logged in as:<br/>
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||
<b><span class="username" id="uname_long">username</span></b>
|
||
</div>
|
||
<div class="account-links">
|
||
<ul class="usa-unstyled-list">
|
||
<li><a id="account_myncbi" href="/myncbi/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_myncbi">Dashboard</a></li>
|
||
<li><a id="account_pubs" href="/myncbi/collections/bibliography/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_pubs">Publications</a></li>
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||
<li><a id="account_settings" href="/account/settings/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_settings">Account settings</a></li>
|
||
<li><a id="account_logout" href="/account/signout/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_logout">Log out</a></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
</header>
|
||
<div role="navigation" aria-label="access keys">
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||
<a id="nws_header_accesskey_0" href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0" tabindex="-1">Access keys</a>
|
||
<a id="nws_header_accesskey_1" href="https://www.ncbi.nlm.nih.gov" class="usa-sr-only" accesskey="1" tabindex="-1">NCBI Homepage</a>
|
||
<a id="nws_header_accesskey_2" href="/myncbi/" class="set-base-url usa-sr-only" accesskey="2" tabindex="-1">MyNCBI Homepage</a>
|
||
<a id="nws_header_accesskey_3" href="#maincontent" class="usa-sr-only" accesskey="3" tabindex="-1">Main Content</a>
|
||
<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
|
||
</div>
|
||
<section data-section="Alerts">
|
||
<div class="ncbi-alerts-placeholder"></div>
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||
</section>
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||
<!-- ========== END HEADER ========== -->
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||
|
||
|
||
|
||
|
||
|
||
<main id="main_content" accesskey="3">
|
||
|
||
<div class="page gb-content-page">
|
||
<!-- topnav -->
|
||
<!-- <component id="PageFixtures" label="topnav"/> -->
|
||
<!--/.header-->
|
||
<div class="header gb-page-header">
|
||
<!-- left header content -->
|
||
<div class="gb-header-left">
|
||
<div>
|
||
<!-- header logo -->
|
||
<div class="res_logo">
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||
<h1 class="res_name">dbVar Genome Browser</h1>
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||
<h2 class="res_tagline">Version 3.2</h2>
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||
</div>
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||
<div></div>
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||
|
||
</div>
|
||
</div>
|
||
<!-- header content -->
|
||
<div class="gb-header-right">
|
||
|
||
|
||
|
||
<div>
|
||
<div class="gb-header-content">
|
||
<div>
|
||
<div class="gb-header-links">
|
||
<ul>
|
||
<!-- <li>
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||
<a href="javascript:void(0)" id="gb-share-page" class="gb-share-page" title="Create URL with the current state that can be shared">Share this page</a>
|
||
</li> -->
|
||
<li>
|
||
<a href="javascript:void(0)" id="gb-reset-page" class="gb-reset-page" title="Reset saved state">Reset All</a>
|
||
</li>
|
||
<li class="gb-menu">
|
||
<a href="javascript:void(0)">More Info</a>
|
||
<ul>
|
||
<li class="help">
|
||
<a href="/dbvar/browse/help/" target="dbVar_help">Help</a>
|
||
</li>
|
||
<li class="help">
|
||
<a href="/dbvar/browse/release-notes/" target="dbVar_help">Release Notes</a>
|
||
</li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
<div class="gb-state gb-off">
|
||
<div class="gb-state-panel">
|
||
<span class="gb-state-panel-close"></span>
|
||
<div class="gb-state-section">
|
||
<span class="gb-state-header">URL for current configuration</span>
|
||
</div>
|
||
<div class="gb-state-section gb-section-url">
|
||
<span class="gb-state-url"></span>
|
||
</div>
|
||
<div class="gb-state-section">
|
||
<span class="gb-state-comment">This URL is a temporary URL and is valid approximately for 90 days.</span>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
<!-- page content top -->
|
||
|
||
<!-- page content -->
|
||
<div>
|
||
<div class="gb-page-content-top">
|
||
<div class="content-header" context="dbvar-home">
|
||
<div>
|
||
<h3>View data across studies on the genome</h3>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<div class="gb-page-content">
|
||
<div class="content-left">
|
||
</div>
|
||
<div class="content-right">
|
||
</div>
|
||
</div>
|
||
<div class="gb-page-content-bottom">
|
||
<div class="box-wrap" context="dbvar-home">
|
||
<div class="selector-wrap">
|
||
<span class="section">
|
||
<span class="label">Select an Organism:</span>
|
||
<select id="select-org" disabled="disabled" autofocus="autofocus"></select>
|
||
</span>
|
||
<span class="section">
|
||
<span class="label">Select an Assembly:</span>
|
||
<select id="select-assm" disabled="disabled"></select>
|
||
</span>
|
||
<span class="config-load-wait">
|
||
<img alt="wait" src="/projects/genome/browser/img/wait.gif"/>
|
||
<span>Loading... Please wait</span>
|
||
</span>
|
||
</div>
|
||
<div class="content-comment">
|
||
<span>Select a region using search or your uploaded data</span>
|
||
</div>
|
||
<div class="content-wrap" upload="menuEnabled:true">
|
||
<span>
|
||
|
||
|
||
|
||
<h4>Search</h4>
|
||
<div class="gb-search results-closed">
|
||
<h3>Region Search</h3>
|
||
<div class="gb-search-ctrl">
|
||
<label for="loc-search-widget" aria-label="Search"></label>
|
||
<input id="loc-search-widget" type="text" placeholder="" value=""/>
|
||
<span class="gb-search-go" aria-label="Search"></span>
|
||
</div>
|
||
<div class="content-results">
|
||
<ul class="content-tabs"></ul>
|
||
</div>
|
||
<div class="comment">
|
||
<span class="gb-search-help" title="Expand for search examples">Examples</span>
|
||
<ul search-id="loc-search-widget"></ul>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
</span>
|
||
<span class="gb-upload-wrap">
|
||
|
||
|
||
|
||
<h4>User Data and Track Hubs</h4>
|
||
<div class="gb-user-data">
|
||
<div class="gb-track-sect">
|
||
<span>
|
||
<a class="gb-select gb-menu-empty" href="#menu">- no added tracks or track hubs -</a>
|
||
<a class="gb-menu" href="#menu" role="button">
|
||
<span>Options</span>
|
||
</a>
|
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<li><strong>Remote VCF</strong><span>un-indexed up to 2000 lines or with an index file present at the same location</span>
|
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|
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<li><strong>BigBed</strong>
|
||
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|
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<li><strong>BigWig</strong>
|
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|
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|
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