120 lines
9.6 KiB
Text
120 lines
9.6 KiB
Text
<!DOCTYPE html>
|
|
<!--[if lte IE 9]> <html class="lt-ie9"> <![endif]-->
|
|
<!--[if gt IE 9]><!--> <html lang="en"> <!--<![endif]-->
|
|
<head>
|
|
<title>8S2D: NMR structure of entolysin A in micellar DPC solution</title>
|
|
<script type="application/ld+json">
|
|
{
|
|
"@context": "https://schema.org",
|
|
"@type": "Organization",
|
|
"name": "MMDB",
|
|
"author": {
|
|
"@type": "Organization",
|
|
"name": "NCBI Structure Group"
|
|
},
|
|
"url": "https://www.ncbi.nlm.nih.gov/Strucure/pdb/",
|
|
"description": "Macromolecule Structure Molecular Modeling Database"
|
|
}
|
|
</script>
|
|
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
|
|
<meta http-equiv="Cache-Control" content="must-revalidate">
|
|
<meta property="og:image" content="https://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbimage.fcgi?&uid=8S2D&small=t">
|
|
<meta property="og:image:width" content="100">
|
|
<meta property="og:image:height" content="100">
|
|
<meta name="viewport" content="width=device-width, initial-scale=1.0">
|
|
<meta name="description" content="(3~{R})-3-oxidanyldecanoic acid">
|
|
<meta name="Author" content="NCBI/CBB/Structure group">
|
|
<meta name="keywords" content="(3~{R})-3-oxidanyldecanoic acid, MMDB, Protein structure, protein interaction">
|
|
<meta name="ncbi_app" content="structure">
|
|
<meta name="ncbi_uid" content="259872">
|
|
<meta name="ncbi_accn" content="8S2D">
|
|
<meta name="ncbi_pdid" content="summary">
|
|
<meta name="ncbi_phid" content="95B7BE127D62A9F10000000000000001">
|
|
<meta name="ncbi_pinger_ga_track" content="true">
|
|
<meta name="ncbi_pinger_track_stat" content="true">
|
|
<meta name="ncbi_pinger_click_ping_selector" content="button, a, input[type=search], input[type=range] li[pinger], div[pinger], label[pinger]">
|
|
<link rel="canonical" href="https://www.ncbi.nlm.nih.gov/Structure/pdb/8S2D">
|
|
<link rel="stylesheet" href="/core/jig/1.15.3/css/jig.min.css">
|
|
<link rel="stylesheet" href="/Structure/script/entrezstyle.min.css">
|
|
<link rel="stylesheet" href="/Structure/mmdb/css/mmdb.min.css?4a13">
|
|
<link rel="stylesheet" href="/Structure/icn3d/lib/jquery-ui.min.css">
|
|
<link rel="stylesheet" href="/Structure/icn3d/icn3d.css">
|
|
</head>
|
|
<body id="mmdb_summary">
|
|
<div id="centerColumn">
|
|
<div id="centerBorder">
|
|
<!-- title logo -->
|
|
<table cellspacing="0" id="mmdb_logo_links" cellpadding="0" width="100%"><tr><td><a class="ncbi_home_logo" href="/" alt="NBI HOME Logo">NCBI</a><div class="NLMLogo">National Center for<br/>Biotechnology Information</div></td><td class="titletext" align="left"><!--a href="/Structure/MMDB/mmdb.shtml"--><img border=0 src="/Structure/MMDB/strbanner.jpg" alt="8S2D - NCBI MMDB Logo"><!--/a--></td><td style="padding-bottom:1em;vertical-align:bottom"><form id="mmdbsearch" method="get" name="mmdbsearch" action="/Structure/pdb/" style="margin:0;padding:0;vertical-align: bottom;"><div class="mmdb-search-holder" style="height:100%;line-height:100%"><input accesskey="S" id="mmdb-search-box" type="search" name="uid" placeholder="Enter PDB ID or MMDB ID" value = "" aria-describedby="mmdb-search-uid" title="Enter PDB ID or MMDB ID"><button id="mmdb-search-button" class="__button mmdb-search-button" style="height:100%;line-height:100%;margin-right:-3px;" type="submit">Search</button></div></form></td></tr></table>
|
|
<!-- end title logo -->
|
|
<div style="clear:both;margin:0;padding:0;display:none" id="shutdown"></div>
|
|
<!-- insert start -->
|
|
<script>window.SARSCov2Taxid=[228407,2697049];</script>
|
|
<table id="content_table" border="0" cellspacing="0" cellpadding="0" width="968">
|
|
<tr><td align="center">
|
|
<a name="pagetop"></a>
|
|
<!-- StructureInfo start -->
|
|
<section data-section="infor" id="structure-infor-section"><h1 class="structure-title" data-mmdbid="259872" data-pdbid="8S2D" id="structure-title"><a class="link title-pdbid" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=8S2D" style="font-weight:600;margin:0;">8S2D: </a><span>NMR structure of entolysin A in micellar DPC solution</span></h1>
|
|
<div class="floatClear" id="infor-detail"><div class="reference_section" id="reference-section"></div>
|
|
<div class="property_section"><form action="/Structure/mmdb/mmdbsrv.cgi" method="post" id="reloadform" name="reloadform" style="margin:0;padding:0"><input type="hidden" name="uid" value="259872"/></form><table border="0" cellpadding="4" cellspacing="4"><tr><td class="H4 pdbid-download">PDB ID: </td>
|
|
<td><a id="pdb_id_link" class="link" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=8S2D" title="PDB ID">8S2D</a><a id="download-pdb-file" class="__button" tabindex="-1" href="https://files.rcsb.org/download/8S2D.pdb" title="Download PDB file" download="8S2D.pdb">Download</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvStructureViewDataSetPDBdataset" title="-click to see help"></a></td>
|
|
</tr>
|
|
<tr><td class="H4 property-name">MMDB ID: </td>
|
|
<td style="font-weight:bold"><span class="info-item">259872</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvRecordIdentifiers" title="-click to see help"></a></td>
|
|
</tr>
|
|
<tr><td class="H4 property-name">PDB Deposition Date: </td>
|
|
<td><span id="depositionterm" style="padding-left: 0.2em;">2024/2/16<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDeposited" title="-click to see help"></a></span></td>
|
|
</tr>
|
|
<tr><td class="H4 property-name">Updated in MMDB: </td>
|
|
<td class="text" nowrap><span id="mmdb_updated" style="padding-left:0.2em">2025/03</span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvUpdatedInMMDB" title="-click to see help"></a></td>
|
|
</tr>
|
|
<tr><td class="H4 property-name">Experimental Method: </td>
|
|
<td class="TEXT" nowrap><div id="expmethod"><span title="solution nmr" class="info-item">solution nmr</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvExperimentalMethod" title="-click to see help"></a></div></td>
|
|
</tr>
|
|
<tr><td class="H4 property-name">Source Organism: </td>
|
|
<td class="text"><div class="info-item" id="taxonomy_links">Unassigned</div></td>
|
|
</tr>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</section>
|
|
<!-- end of StructureInfo -->
|
|
</td></tr>
|
|
<!-- tab section -->
|
|
<tr><td><section data-section="tabs" id="display_select"></section></td></tr>
|
|
<!-- end button row -->
|
|
<tr><td align="center">
|
|
<!-- start annotations -->
|
|
<div align="center" id="annotblock" style="margin-top:0.8em;"><div class="formbox" id="asublock"><div id="asublock"><section class="graph-section" data-section="graph" id="biounit-section-0"></section>
|
|
<section class="content_block" data-section="table"><table border="1" class="bucontent"><caption class="butbl_caption">Molecular Components in 8S2D<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvMolecularComponents" title="-click to see help"></a></caption>
|
|
<thead><tr><th>Label</th>
|
|
<th>Count</th>
|
|
<th>Molecule</th>
|
|
</tr></thead>
|
|
<tbody data-bun="0" data-type="chemical" id="unit0_chemical_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Chemical and Non-standard biopolymers (1 molecule)</div></td></tr>
|
|
<tr><td data-row="0"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-0-1" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="2" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=505945355">1</a></span></div></td>
|
|
<td><div class="chem-label">1</div></td>
|
|
<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="505945355"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=505945355" title="(3~{R})-3-oxidanyldecanoic acid">(3~{R})-3-oxidanyldecanoic acid</a></span><span class="chem-image-holder" title="(3~{R})-3-oxidanyldecanoic acid"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=505945355"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=505945355" alt="(3~{R})-3-oxidanyldecanoic acid"></a></span></div></td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
<div style="margin:0.5em 1em;text-align:left; font-size:85%;">* Click molecule labels to explore molecular sequence information.<br/></div>
|
|
</section>
|
|
</div></div></div>
|
|
<!-- end annotations -->
|
|
</td></tr>
|
|
</table>
|
|
<!-- Start of citation -->
|
|
<div align="left" class="citing"><hr width="85%"/><div style="font-weight:bold">Citing MMDB</div><div class="citref" style="padding:0.2em;"><img style="border:0;text-align:left;height:15px;width:15px;margin-right:0.2em" src="//pubchem.ncbi.nlm.nih.gov/images/PubMed.gif"> <span style="color:#444"> Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. </span> <cite><a class="link" href="//www.ncbi.nlm.nih.gov/pubmed/24319143">"<span style="font-style:italic;"> MMDB and VAST+: tracking structural similarities between macromolecular complexes. <b style="font-size:90%">Nucleic Acids Res. 2014 Jan; 42(Database issue)</b>:D297-303</span></a></cite></div></div>
|
|
<!-- end citation -->
|
|
<!-- insert end -->
|
|
</div> <!-- end of centerBorder -->
|
|
</div> <!-- end of centerColumn -->
|
|
<script src="/Structure/icn3d/lib/jquery.min.js"></script>
|
|
<script src="/Structure/icn3d/lib/jquery-ui.min.js"></script>
|
|
<script src="/Structure/icn3d/lib/threeClass.min.js"></script>
|
|
<script src="/Structure/icn3d/icn3d.min.js"></script>
|
|
<script src="/Structure/mmdb/js/mmdb.min.js?65fe"></script>
|
|
<script>window.MMDB={"BuJSon":{"pdbId": "8S2D","mmdbId": 259872,"qgis": [],"0": {}},"QmanLabel":"mmdb-259872","UnitInfo":{"0": {"cmplx": {"3": {"name": "Single 3D structure","selected": false},"4": {"name": "All Models","selected": false},"2": {"name": "alpha-Carbons","selected": false}},"schleg": [false,false,true],"islarge": false}},"VastCnt":0,"hasValidImages":{"0":1},"hasValidIntrImg":{"0":1},"isCOVID19":0,"isLargeBiounit":{"0":0},"sidStr":[505945355]};
|
|
</script>
|
|
<script defer type="text/javascript" src="https://www.ncbi.nlm.nih.gov/core/pinger/pinger.js"></script>
|
|
</body></html>
|