174 lines
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174 lines
21 KiB
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<title>3N8Y: Structure of Aspirin Acetylated Cyclooxygenase-1 in Complex with Diclofenac</title>
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<!-- StructureInfo start -->
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<section data-section="infor" id="structure-infor-section"><h1 class="structure-title" data-mmdbid="83677" data-pdbid="3N8Y" id="structure-title"><a class="link title-pdbid" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=3N8Y" style="font-weight:600;margin:0;">3N8Y: </a><span>Structure of Aspirin Acetylated Cyclooxygenase-1 in Complex with Diclofenac</span></h1>
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<div class="floatClear" id="infor-detail"><div class="reference_section" data-pmids="20669977" id="reference-section"></div>
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<td><a id="pdb_id_link" class="link" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=3N8Y" title="PDB ID">3N8Y</a><a id="download-pdb-file" class="__button" tabindex="-1" href="https://files.rcsb.org/download/3N8Y.pdb" title="Download PDB file" download="3N8Y.pdb">Download</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvStructureViewDataSetPDBdataset" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">MMDB ID: </td>
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<td style="font-weight:bold"><span class="info-item">83677</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvRecordIdentifiers" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">PDB Deposition Date: </td>
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<td><span id="depositionterm" style="padding-left: 0.2em;">2010/5/28<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDeposited" title="-click to see help"></a></span></td>
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<tr><td class="H4 property-name">Updated in MMDB: </td>
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<td class="text" nowrap><span id="mmdb_updated" style="padding-left:0.2em">2023/09</span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvUpdatedInMMDB" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">Experimental Method: </td>
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<td class="TEXT" nowrap><div id="expmethod"><span title="x-ray diffraction" class="info-item">x-ray diffraction</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvExperimentalMethod" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Resolution: </td>
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<td class="TEXT" id="resolution" nowrap>2.6 Å<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#SearchFieldResolution" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">Source Organism: </td>
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<td class="text"><div id="taxonomy"><a id="taxword" class="link" href="//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=9940" title="Ovis aries">Ovis aries</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvTaxonomy" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Similar Structures: </td>
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<td><div id="vast-button-holder" style="width:100%;overflow:hidden;"><button class="__button" id="vast_button" type="submit">VAST+</button>
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<a class="help-img" href="/Structure/vastplus/docs/vastplus_help.html" title="-click to see help"></a></div></td>
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<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDownaloadSequenceMMDB" title="-click to see help"></a></td></tr>
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</section>
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<!-- end of StructureInfo -->
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<!-- start annotations -->
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<div align="center" id="annotblock" style="margin-top:0.8em;"><div class="formbox" id="authormethod"><div id="bublock0"><div class="biotext" id="bublock0_unit_name">Biological Unit for 3N8Y: dimeric; determined by author and by software (PISA)<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvBiologicalUnit" title="-click to see help"></a></div>
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<style>.unitschema-1{
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background-image:url("/Structure/mmdb/mmdbimage.fcgi?uid=83677&type=2&unm=1");
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}</style><section class="graph-section" data-section="graph" id="biounit-section-1"></section>
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<section class="content_block" data-section="table"><table border="1" class="bucontent"><caption class="butbl_caption">Molecular Components in 3N8Y<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvMolecularComponents" title="-click to see help"></a></caption>
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<thead><tr><th>Label</th>
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<th>Count</th>
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<th>Molecule</th>
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</tr></thead>
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<tbody data-bun="1" data-type="protein" id="unit1_protein_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Proteins (2 molecules)</div></td></tr>
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<tr data-row="0"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-1" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/3N8Y_A" id="mol-legend-1-1" class="protein-molecule-label-1" data-gi="301598673" data-molid="1" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">A</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Prostaglandin G/H Synthase 1">Prostaglandin G/H Synthase 1</div>
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<div class="gene-symbol">(Gene symbol: <a href="//www.ncbi.nlm.nih.gov/gene/443551" alt="prostaglandin-endoperoxide synthase 1">PTGS1</a>)</div><div class="annot-img-block" data-bun="1" data-gmolid="1" data-molids="1" id="molgraph-p-1-1"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="1"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-2" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/3N8Y_B" id="mol-legend-1-2" class="protein-molecule-label-1" data-gi="301598674" data-molid="2" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">B</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Prostaglandin G/H Synthase 1">Prostaglandin G/H Synthase 1</div>
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<div class="gene-symbol">(Gene symbol: <a href="//www.ncbi.nlm.nih.gov/gene/443551" alt="prostaglandin-endoperoxide synthase 1">PTGS1</a>)</div><div class="annot-img-block" data-bun="1" data-gmolid="2" data-molids="2" id="molgraph-p-1-2"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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</tbody>
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<tbody data-bun="1" data-type="chemical" id="unit1_chemical_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Chemicals and Non-standard biopolymers (28 molecules)</div></td></tr>
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<tr><td data-row="0"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-1" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="3,4,7,12,14,15,18" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206239">1</a></span></div></td>
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<td><div class="chem-label">7</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="99206239"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206239" title="2-acetamido-2-deoxy-beta-D-glucopyranose">2-acetamido-2-deoxy-beta-D-glucopyranose</a></span><span class="chem-image-holder" title="2-acetamido-2-deoxy-beta-D-glucopyranose"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206239"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=99206239" alt="2-acetamido-2-deoxy-beta-D-glucopyranose"></a></span></div></td>
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</tr>
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<tr><td data-row="1"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-2" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="5,6,9,16,17,20,21" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206241">2</a></span></div></td>
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<td><div class="chem-label">7</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="99206241"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206241" title="beta-D-mannopyranose">beta-D-mannopyranose</a></span><span class="chem-image-holder" title="beta-D-mannopyranose"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206241"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=99206241" alt="beta-D-mannopyranose"></a></span></div></td>
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</tr>
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<tr><td data-row="2"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-3" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="8,13,19" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568830">3</a></span></div></td>
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<td><div class="chem-label">3</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="483568830"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568830" title="2-acetamido-2-deoxy-alpha-D-glucopyranose">2-acetamido-2-deoxy-alpha-D-glucopyranose</a></span><span class="chem-image-holder" title="2-acetamido-2-deoxy-alpha-D-glucopyranose"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568830"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=483568830" alt="2-acetamido-2-deoxy-alpha-D-glucopyranose"></a></span></div></td>
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</tr>
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<tr><td data-row="3"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-4" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="10,11" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206244">4</a></span></div></td>
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<td><div class="chem-label">2</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="99206244"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206244" title="alpha-D-mannopyranose">alpha-D-mannopyranose</a></span><span class="chem-image-holder" title="alpha-D-mannopyranose"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206244"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=99206244" alt="alpha-D-mannopyranose"></a></span></div></td>
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</tr>
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<tr><td data-row="4"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-5" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="22,26" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568831">5</a></span></div></td>
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<td><div class="chem-label">2</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="483568831"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568831" title="PROTOPORPHYRIN IX CONTAINING FE">PROTOPORPHYRIN IX CONTAINING FE</a></span><span class="chem-image-holder" title="PROTOPORPHYRIN IX CONTAINING FE"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568831"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=483568831" alt="PROTOPORPHYRIN IX CONTAINING FE"></a></span></div></td>
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</tr>
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<tr><td data-row="5"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-6" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="23,28" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568832">6</a></span></div></td>
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<td><div class="chem-label">2</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="483568832"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568832" title="2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID">2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID</a></span><span class="chem-image-holder" title="2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568832"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=483568832" alt="2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID"></a></span></div></td>
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</tr>
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<tr><td data-row="6"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-7" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="24,25,29,30" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568833">7</a></span></div></td>
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<td><div class="chem-label">4</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="483568833"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568833" title="octyl beta-D-glucopyranoside">octyl beta-D-glucopyranoside</a></span><span class="chem-image-holder" title="octyl beta-D-glucopyranoside"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=483568833"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=483568833" alt="octyl beta-D-glucopyranoside"></a></span></div></td>
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</tr>
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<tr><td data-row="7"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-8" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="27" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206248">8</a></span></div></td>
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<td><div class="chem-label">1</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="99206248"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206248" title="2-HYDROXYBENZOIC ACID">2-HYDROXYBENZOIC ACID</a></span><span class="chem-image-holder" title="2-HYDROXYBENZOIC ACID"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=99206248"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=99206248" alt="2-HYDROXYBENZOIC ACID"></a></span></div></td>
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</tr>
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</tbody>
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</table>
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<div style="margin:0.5em 1em;text-align:left; font-size:85%;">* Click molecule labels to explore molecular sequence information.<br/></div>
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</section>
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</div></div></div>
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<!-- end annotations -->
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</td></tr>
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</table>
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<!-- Start of citation -->
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<div align="left" class="citing"><hr width="85%"/><div style="font-weight:bold">Citing MMDB</div><div class="citref" style="padding:0.2em;"><img style="border:0;text-align:left;height:15px;width:15px;margin-right:0.2em" src="//pubchem.ncbi.nlm.nih.gov/images/PubMed.gif"> <span style="color:#444"> Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. </span> <cite><a class="link" href="//www.ncbi.nlm.nih.gov/pubmed/24319143">"<span style="font-style:italic;"> MMDB and VAST+: tracking structural similarities between macromolecular complexes. <b style="font-size:90%">Nucleic Acids Res. 2014 Jan; 42(Database issue)</b>:D297-303</span></a></cite></div></div>
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