163 lines
26 KiB
Text
163 lines
26 KiB
Text
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<title>3KRD: Crystal Structure of Mycobacterium Tuberculosis Proteasome in complex with Fellutamide B</title>
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<table cellspacing="0" id="mmdb_logo_links" cellpadding="0" width="100%"><tr><td><a class="ncbi_home_logo" href="/" alt="NBI HOME Logo">NCBI</a><div class="NLMLogo">National Center for<br/>Biotechnology Information</div></td><td class="titletext" align="left"><!--a href="/Structure/MMDB/mmdb.shtml"--><img border=0 src="/Structure/MMDB/strbanner.jpg" alt="3KRD - NCBI MMDB Logo"><!--/a--></td><td style="padding-bottom:1em;vertical-align:bottom"><form id="mmdbsearch" method="get" name="mmdbsearch" action="/Structure/pdb/" style="margin:0;padding:0;vertical-align: bottom;"><div class="mmdb-search-holder" style="height:100%;line-height:100%"><input accesskey="S" id="mmdb-search-box" type="search" name="uid" placeholder="Enter PDB ID or MMDB ID" value = "" aria-describedby="mmdb-search-uid" title="Enter PDB ID or MMDB ID"><button id="mmdb-search-button" class="__button mmdb-search-button" style="height:100%;line-height:100%;margin-right:-3px;" type="submit">Search</button></div></form></td></tr></table>
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<!-- StructureInfo start -->
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<section data-section="infor" id="structure-infor-section"><h1 class="structure-title" data-mmdbid="244787" data-pdbid="3KRD" id="structure-title"><a class="link title-pdbid" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=3KRD" style="font-weight:600;margin:0;">3KRD: </a><span>Crystal Structure of Mycobacterium Tuberculosis Proteasome in complex with Fellutamide B</span></h1>
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<div class="floatClear" id="infor-detail"><div class="reference_section" data-pmids="20558127" id="reference-section"></div>
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<div class="property_section"><form action="/Structure/mmdb/mmdbsrv.cgi" method="post" id="reloadform" name="reloadform" style="margin:0;padding:0"><input type="hidden" name="uid" value="244787"/></form><table border="0" cellpadding="4" cellspacing="4"><tr><td class="H4 pdbid-download">PDB ID: </td>
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<td><a id="pdb_id_link" class="link" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=3KRD" title="PDB ID">3KRD</a><a id="download-pdb-file" class="__button" tabindex="-1" href="https://files.rcsb.org/download/3KRD.pdb" title="Download PDB file" download="3KRD.pdb">Download</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvStructureViewDataSetPDBdataset" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">MMDB ID: </td>
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<td style="font-weight:bold"><span class="info-item">244787</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvRecordIdentifiers" title="-click to see help"></a></td>
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</tr>
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<tr><td class="H4 property-name">PDB Deposition Date: </td>
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<td><span id="depositionterm" style="padding-left: 0.2em;">2009/11/18<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDeposited" title="-click to see help"></a></span></td>
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</tr>
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<tr><td class="H4 property-name">Updated in MMDB: </td>
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<td class="text" nowrap><span id="mmdb_updated" style="padding-left:0.2em">2024/04</span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvUpdatedInMMDB" title="-click to see help"></a></td>
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</tr>
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<tr><td class="H4 property-name">Experimental Method: </td>
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<td class="TEXT" nowrap><div id="expmethod"><span title="x-ray diffraction" class="info-item">x-ray diffraction</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvExperimentalMethod" title="-click to see help"></a></div></td>
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</tr>
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<tr><td class="H4 property-name">Resolution: </td>
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<td class="TEXT" id="resolution" nowrap>2.5 Å<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#SearchFieldResolution" title="-click to see help"></a></td>
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</tr>
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<tr><td class="H4 property-name">Source Organism: </td>
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<td class="text"><div id="taxonomy"><div id="taxonomyterm"><span id="multitaxon" style="display:inline-block"><span id="taxword" title="synthetic construct">synthetic construct</span><span arr="down" class="taxdrop_arrow">▼</span></span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvTaxonomy" title="-click to see help"></a></div>
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<div class="menupop" id="taxonomycontent"><table cellpadding="0" cellspacing="0" width="300"><tr><th width="50%">Taxonomy</th>
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<th width="50%">Molecule</th>
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</tr>
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<tr><td><a class="link taxcell" href="//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=32630" style="text-decoration:underline;">synthetic construct</a></td>
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<td>a, b, c, d, e, f, g, h, i, j, k, l, m, n</td>
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</tr>
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<tr><td><a class="link taxcell" href="//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=1773" style="text-decoration:underline;">Mycobacterium tuberculosis</a></td>
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<td>A, B, C, D, E, F, G, H, I, J, K, L, <br/>M, N, O, P, Q, R, S, T, U, V, W,<br/> X, Y, Z, 1, 2</td>
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</tr>
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</table></div>
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</div></td>
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</tr>
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<tr><td class="H4 property-name">Similar Structures: </td>
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<td><div id="vast-button-holder" style="width:100%;overflow:hidden;"><button class="__button" id="vast_button" type="submit">VAST+</button>
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<a class="help-img" href="/Structure/vastplus/docs/vastplus_help.html" title="-click to see help"></a></div></td>
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<tr><td colspan="2" style="text-align: center"><button class="__button" id="download_sequence" type="submit">Download sequence data</button>
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<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDownaloadSequenceMMDB" title="-click to see help"></a></td></tr>
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</table>
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</div>
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</section>
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<!-- end of StructureInfo -->
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<!-- start annotations -->
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<div align="center" id="annotblock" style="margin-top:0.8em;"><div class="formbox" id="authormethod"><div id="bublock0"><div class="biotext" id="bublock0_unit_name">Biological Unit for 3KRD: 42-meric; determined by author<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvBiologicalUnit" title="-click to see help"></a></div>
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<style>.unitschema-1{
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background-image:url("/Structure/mmdb/mmdbimage.fcgi?uid=244787&type=2&unm=1");
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}</style><section class="graph-section" data-section="graph" id="biounit-section-1"></section>
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<section class="content_block" data-section="table"><table border="1" class="bucontent"><caption class="butbl_caption">Molecular Components in 3KRD<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvMolecularComponents" title="-click to see help"></a></caption>
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<thead><tr><th>Label</th>
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<th>Count</th>
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<th>Molecule</th>
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</tr></thead>
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<tbody data-bun="1" data-type="protein" id="unit1_protein_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Proteins (42 molecules)</div></td></tr>
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<tr data-row="0"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-1"><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_A" id="mol-legend-1-1" class="protein-molecule-label-1" data-gi="307776448" data-molid="1" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">A</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_B" id="mol-legend-1-2" class="protein-molecule-label-1" data-gi="307776449" data-molid="2" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">B</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_D" id="mol-legend-1-4" class="protein-molecule-label-1" data-gi="307776451" data-molid="4" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">D</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_F" id="mol-legend-1-6" class="protein-molecule-label-1" data-gi="307776453" data-molid="6" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">F</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_I" id="mol-legend-1-9" class="protein-molecule-label-1" data-gi="307776456" data-molid="9" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">I</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_K" id="mol-legend-1-11" class="protein-molecule-label-1" data-gi="307776458" data-molid="11" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">K</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_M" id="mol-legend-1-13" class="protein-molecule-label-1" data-gi="307776460" data-molid="13" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">M</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_O" id="mol-legend-1-15" class="protein-molecule-label-1" data-gi="307776462" data-molid="15" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">O</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_Q" id="mol-legend-1-17" class="protein-molecule-label-1" data-gi="307776464" data-molid="17" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">Q</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_S" id="mol-legend-1-19" class="protein-molecule-label-1" data-gi="307776466" data-molid="19" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">S</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_U" id="mol-legend-1-21" class="protein-molecule-label-1" data-gi="307776468" data-molid="21" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">U</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_W" id="mol-legend-1-23" class="protein-molecule-label-1" data-gi="307776470" data-molid="23" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">W</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_Y" id="mol-legend-1-25" class="protein-molecule-label-1" data-gi="307776472" data-molid="25" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">Y</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_1" id="mol-legend-1-27" class="protein-molecule-label-1" data-gi="307776474" data-molid="27" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">1</div></a></div></td>
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<td>14</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Proteasome Subunit Alpha">Proteasome Subunit Alpha</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="1" data-molids="1,2,4,6,9,11,13,15,17,19,21,23,25,27" id="molgraph-p-1-1"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="1"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-2"><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_C" id="mol-legend-1-3" class="protein-molecule-label-1" data-gi="307776450" data-molid="3" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">C</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_E" id="mol-legend-1-5" class="protein-molecule-label-1" data-gi="307776452" data-molid="5" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">E</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_G" id="mol-legend-1-7" class="protein-molecule-label-1" data-gi="307776454" data-molid="7" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">G</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_H" id="mol-legend-1-8" class="protein-molecule-label-1" data-gi="307776455" data-molid="8" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">H</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_J" id="mol-legend-1-10" class="protein-molecule-label-1" data-gi="307776457" data-molid="10" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">J</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_L" id="mol-legend-1-12" class="protein-molecule-label-1" data-gi="307776459" data-molid="12" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">L</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_N" id="mol-legend-1-14" class="protein-molecule-label-1" data-gi="307776461" data-molid="14" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">N</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_P" id="mol-legend-1-16" class="protein-molecule-label-1" data-gi="307776463" data-molid="16" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">P</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_R" id="mol-legend-1-18" class="protein-molecule-label-1" data-gi="307776465" data-molid="18" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">R</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_T" id="mol-legend-1-20" class="protein-molecule-label-1" data-gi="307776467" data-molid="20" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">T</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_V" id="mol-legend-1-22" class="protein-molecule-label-1" data-gi="307776469" data-molid="22" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">V</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_X" id="mol-legend-1-24" class="protein-molecule-label-1" data-gi="307776471" data-molid="24" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">X</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_Z" id="mol-legend-1-26" class="protein-molecule-label-1" data-gi="307776473" data-molid="26" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">Z</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_2" id="mol-legend-1-28" class="protein-molecule-label-1" data-gi="307776475" data-molid="28" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">2</div></a></div></td>
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<td>14</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Proteasome Subunit Beta">Proteasome Subunit Beta</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="3" data-molids="3,5,7,8,10,12,14,16,18,20,22,24,26,28" id="molgraph-p-1-3"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="2"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-3"><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_a" id="mol-legend-1-29" class="protein-molecule-label-1" data-gi="2705242406" data-molid="29" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">a</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_b" id="mol-legend-1-30" class="protein-molecule-label-1" data-gi="2705242407" data-molid="30" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">b</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_c" id="mol-legend-1-31" class="protein-molecule-label-1" data-gi="2705242408" data-molid="31" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">c</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_d" id="mol-legend-1-32" class="protein-molecule-label-1" data-gi="2705242409" data-molid="32" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">d</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_e" id="mol-legend-1-33" class="protein-molecule-label-1" data-gi="2705242410" data-molid="33" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">e</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_f" id="mol-legend-1-34" class="protein-molecule-label-1" data-gi="2705242411" data-molid="34" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">f</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_g" id="mol-legend-1-35" class="protein-molecule-label-1" data-gi="2705242412" data-molid="35" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">g</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_h" id="mol-legend-1-36" class="protein-molecule-label-1" data-gi="2705242413" data-molid="36" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">h</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_i" id="mol-legend-1-37" class="protein-molecule-label-1" data-gi="2705242414" data-molid="37" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">i</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_j" id="mol-legend-1-38" class="protein-molecule-label-1" data-gi="2705242415" data-molid="38" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">j</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_k" id="mol-legend-1-39" class="protein-molecule-label-1" data-gi="2705242416" data-molid="39" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">k</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_l" id="mol-legend-1-40" class="protein-molecule-label-1" data-gi="2705242417" data-molid="40" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">l</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_m" id="mol-legend-1-41" class="protein-molecule-label-1" data-gi="2705242418" data-molid="41" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">m</div></a><a href="//www.ncbi.nlm.nih.gov/protein/3KRD_n" id="mol-legend-1-42" class="protein-molecule-label-1" data-gi="2705242419" data-molid="42" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">n</div></a></div></td>
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<td>14</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Fellutamide B">Fellutamide B</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="29" data-molids="29,30,31,32,33,34,35,36,37,38,39,40,41,42" id="molgraph-p-1-29"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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</tbody>
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<tbody data-bun="1" data-type="chemical" id="unit1_chemical_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Chemicals and Non-standard biopolymers (14 molecules)</div></td></tr>
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<tr><td data-row="0"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-1" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="43,44,45,46,47,48,49,50,51,52,53,54,55,56" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=491297326">1</a></span></div></td>
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<td><div class="chem-label">14</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="491297326"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=491297326" title="(3R)-3-HYDROXYDODECANOIC ACID">(3R)-3-HYDROXYDODECANOIC ACID</a></span><span class="chem-image-holder" title="(3R)-3-HYDROXYDODECANOIC ACID"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=491297326"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=491297326" alt="(3R)-3-HYDROXYDODECANOIC ACID"></a></span></div></td>
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</tr>
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</tbody>
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</table>
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<div style="margin:0.5em 1em;text-align:left; font-size:85%;">* Click molecule labels to explore molecular sequence information.<br/></div>
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</section>
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</div></div></div>
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</td></tr>
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</table>
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<div align="left" class="citing"><hr width="85%"/><div style="font-weight:bold">Citing MMDB</div><div class="citref" style="padding:0.2em;"><img style="border:0;text-align:left;height:15px;width:15px;margin-right:0.2em" src="//pubchem.ncbi.nlm.nih.gov/images/PubMed.gif"> <span style="color:#444"> Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. </span> <cite><a class="link" href="//www.ncbi.nlm.nih.gov/pubmed/24319143">"<span style="font-style:italic;"> MMDB and VAST+: tracking structural similarities between macromolecular complexes. <b style="font-size:90%">Nucleic Acids Res. 2014 Jan; 42(Database issue)</b>:D297-303</span></a></cite></div></div>
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<!-- end citation -->
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